A1EL7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.51Å | |
| OP3 | P | sing | 1.61Å | 1.52Å | |
| P | OP2 | sing | 1.61Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.62Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.54Å | 1.54Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C9 | C10 | doub | 1.33Å | 1.38Å | Aromatic |
| C9 | C6 | sing | 1.39Å | 1.43Å | Aromatic |
| C1' | N1 | sing | 1.46Å | 1.46Å | |
| C10 | S | sing | 1.70Å | 1.73Å | Aromatic |
| C6 | N1 | sing | 1.40Å | 1.40Å | |
| C6 | C5 | doub | 1.38Å | 1.38Å | Aromatic |
| N1 | C2 | sing | 1.34Å | 1.39Å | |
| S | C5 | sing | 1.76Å | 1.72Å | Aromatic |
| C5 | C4 | sing | 1.42Å | 1.41Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.34Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C10 | H5 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C9 | H10 | sing | 1.08Å | 1.08Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP3 | 113.1° | 109.5° |
| OP1 | P | OP2 | 112.2° | 109.5° |
| OP1 | P | O5' | 107.6° | 109.5° |
| OP3 | P | OP2 | 114.3° | 109.5° |
| OP3 | P | O5' | 102.8° | 109.4° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP2 | P | O5' | 105.8° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 118.3° | 123.0° |
| O5' | C5' | C4' | 107.9° | 109.5° |
| O5' | C5' | H5' | 109.9° | 109.5° |
| O5' | C5' | H5'' | 109.9° | 109.4° |
| C5' | C4' | C3' | 113.6° | 110.4° |
| C5' | C4' | O4' | 109.9° | 110.4° |
| C5' | C4' | H4' | 108.9° | 110.4° |
| C4' | C5' | H5' | 109.9° | 109.5° |
| C4' | C5' | H5'' | 109.8° | 109.5° |
| C3' | C4' | O4' | 106.0° | 104.8° |
| C4' | C3' | O3' | 110.2° | 110.6° |
| C4' | C3' | C2' | 104.4° | 104.1° |
| C4' | C3' | H3' | 109.1° | 110.5° |
| C3' | C4' | H4' | 108.6° | 110.3° |
| C4' | O4' | C1' | 106.3° | 105.3° |
| O4' | C4' | H4' | 109.7° | 110.4° |
| O3' | C3' | C2' | 113.5° | 110.5° |
| O3' | C3' | H3' | 110.6° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 113.9° |
| C3' | C2' | C1' | 103.5° | 104.1° |
| C3' | C2' | O2' | 113.6° | 110.5° |
| C2' | C3' | H3' | 108.9° | 110.5° |
| C3' | C2' | H2' | 108.8° | 110.5° |
| O4' | C1' | C2' | 106.2° | 104.8° |
| O4' | C1' | N1 | 108.6° | 110.4° |
| O4' | C1' | H1' | 109.5° | 110.5° |
| C1' | C2' | O2' | 111.4° | 110.5° |
| C2' | C1' | N1 | 115.7° | 110.4° |
| C1' | C2' | H2' | 109.0° | 110.5° |
| C2' | C1' | H1' | 107.9° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O2' | C2' | H2' | 110.4° | 110.6° |
| C10 | C9 | C6 | 110.8° | 115.6° |
| C9 | C10 | S | 112.8° | 111.3° |
| C9 | C10 | H5 | 123.6° | 124.4° |
| C10 | C9 | H10 | 124.6° | 122.2° |
| C9 | C6 | N1 | 127.4° | 129.8° |
| C9 | C6 | C5 | 113.8° | 112.1° |
| C6 | C9 | H10 | 124.6° | 122.2° |
| C1' | N1 | C6 | 121.7° | 119.7° |
| C1' | N1 | C2 | 116.9° | 119.8° |
| N1 | C1' | H1' | 108.8° | 110.3° |
| C10 | S | C5 | 91.7° | 91.8° |
| S | C10 | H5 | 123.6° | 124.4° |
| N1 | C6 | C5 | 118.8° | 118.1° |
| C6 | N1 | C2 | 121.3° | 120.5° |
| C6 | C5 | S | 111.0° | 109.3° |
| C6 | C5 | C4 | 122.9° | 119.3° |
| N1 | C2 | O2 | 122.5° | 119.1° |
| N1 | C2 | N3 | 116.0° | 121.7° |
| S | C5 | C4 | 126.1° | 131.5° |
| C5 | C4 | N3 | 113.7° | 119.6° |
| C5 | C4 | O4 | 125.6° | 120.2° |
| O2 | C2 | N3 | 121.5° | 119.2° |
| C2 | N3 | C4 | 127.3° | 120.8° |
| C2 | N3 | H3 | 116.3° | 119.6° |
| N3 | C4 | O4 | 120.7° | 120.2° |
| C4 | N3 | H3 | 116.4° | 119.6° |
| H5' | C5' | H5'' | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP3 | OP2 | 130.1° | 120.0° |
| OP1 | P | OP3 | O5' | 115.8° | 120.0° |
| OP1 | P | OP2 | O5' | 117.1° | 120.0° |
| OP1 | P | O5' | C5' | 63.4° | 55.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.1° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP3 | P | OP2 | O5' | 112.4° | 120.0° |
| OP3 | P | O5' | C5' | 177.0° | 65.0° |
| OP3 | P | OP2 | HOP2 | 130.5° | 60.0° |
| OP2 | P | O5' | C5' | 56.8° | 175.0° |
| OP2 | P | OP3 | HOP3 | 130.1° | 60.0° |
| P | O5' | C5' | C4' | 174.0° | 180.0° |
| P | O5' | C5' | H5' | 66.2° | 59.9° |
| P | O5' | C5' | H5'' | 54.3° | 60.0° |
| O5' | P | OP2 | HOP2 | 117.1° | 179.9° |
| O5' | P | OP3 | HOP3 | 115.8° | 60.0° |
| O5' | C5' | C4' | H5' | 119.8° | 120.0° |
| O5' | C5' | C4' | H5'' | 119.8° | 120.0° |
| O5' | C5' | C4' | C3' | 163.8° | 175.0° |
| O5' | C5' | C4' | O4' | 77.6° | 69.6° |
| O5' | C5' | C4' | H4' | 42.6° | 52.8° |
| O5' | C5' | H5' | H5'' | 120.8° | 119.9° |
| C5' | C4' | C3' | O4' | 120.8° | 118.8° |
| C5' | C4' | C3' | H4' | 121.3° | 122.3° |
| C5' | C4' | O4' | H4' | 119.7° | 122.4° |
| C5' | C4' | C3' | O3' | 100.4° | 98.5° |
| C5' | C4' | C3' | C2' | 137.5° | 142.8° |
| C5' | C4' | O4' | C1' | 157.4° | 159.4° |
| C5' | C4' | C3' | H3' | 21.2° | 24.2° |
| C4' | C5' | H5' | H5'' | 120.7° | 120.0° |
| C3' | C4' | O4' | H4' | 117.1° | 118.8° |
| C4' | C3' | O3' | C2' | 116.6° | 114.7° |
| C4' | C3' | O3' | H3' | 120.6° | 122.6° |
| C4' | C3' | C2' | H3' | 116.4° | 118.6° |
| C3' | C4' | O4' | C1' | 34.3° | 40.6° |
| C4' | C3' | C2' | C1' | 5.1° | 0.0° |
| C4' | C3' | C2' | O2' | 126.0° | 118.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 176.1° |
| C4' | C3' | C2' | H2' | 110.6° | 118.7° |
| C3' | C4' | C5' | H5' | 76.5° | 55.0° |
| C3' | C4' | C5' | H5'' | 44.0° | 65.0° |
| O4' | C4' | C3' | O3' | 138.8° | 142.7° |
| O4' | C4' | C3' | C2' | 16.7° | 24.0° |
| C4' | O4' | C1' | C2' | 37.9° | 40.5° |
| C4' | O4' | C1' | N1 | 163.0° | 159.4° |
| O4' | C4' | C3' | H3' | 99.6° | 94.6° |
| C4' | O4' | C1' | H1' | 78.3° | 78.3° |
| O4' | C4' | C5' | H5' | 42.2° | 170.4° |
| O4' | C4' | C5' | H5'' | 162.6° | 50.4° |
| O3' | C3' | C2' | H3' | 123.7° | 122.6° |
| O3' | C3' | C2' | C1' | 114.8° | 118.7° |
| O3' | C3' | C2' | O2' | 6.1° | 0.1° |
| O3' | C3' | C2' | H2' | 129.5° | 122.6° |
| O3' | C3' | C4' | H4' | 21.0° | 23.9° |
| C3' | C2' | C1' | O4' | 26.0° | 24.0° |
| C3' | C2' | C1' | O2' | 122.4° | 118.6° |
| C3' | C2' | C1' | H2' | 115.6° | 118.7° |
| C3' | C2' | O2' | H2' | 122.5° | 122.7° |
| C3' | C2' | C1' | N1 | 146.6° | 142.8° |
| C2' | C3' | O3' | HO3' | 63.4° | 61.4° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | H1' | 91.4° | 95.0° |
| C2' | C3' | C4' | H4' | 101.2° | 94.8° |
| O4' | C1' | C2' | N1 | 120.6° | 118.8° |
| O4' | C1' | C2' | H1' | 117.3° | 119.0° |
| O4' | C1' | C2' | O2' | 148.3° | 142.6° |
| O4' | C1' | N1 | H1' | 119.1° | 122.4° |
| O4' | C1' | N1 | C6 | 58.5° | 130.0° |
| O4' | C1' | N1 | C2 | 124.9° | 50.4° |
| O4' | C1' | C2' | H2' | 89.6° | 94.7° |
| C1' | O4' | C4' | H4' | 82.8° | 78.3° |
| C1' | C2' | O2' | H2' | 121.2° | 122.7° |
| C2' | C1' | N1 | H1' | 121.6° | 122.2° |
| C2' | C1' | N1 | C6 | 60.8° | 114.7° |
| C2' | C1' | N1 | C2 | 115.8° | 65.0° |
| C1' | C2' | C3' | H3' | 121.5° | 118.6° |
| C1' | C2' | O2' | HO2' | 63.6° | 176.1° |
| O2' | C2' | C1' | N1 | 91.1° | 98.6° |
| O2' | C2' | C3' | H3' | 117.6° | 122.7° |
| O2' | C2' | C1' | H1' | 31.0° | 23.7° |
| C10 | C9 | C6 | H10 | 180.0° | 179.9° |
| C9 | C10 | S | H5 | 180.0° | 180.0° |
| C10 | C9 | C6 | N1 | 179.4° | 179.9° |
| C10 | C9 | C6 | C5 | 0.2° | 0.0° |
| C9 | C10 | S | C5 | 0.1° | 0.0° |
| C9 | C6 | N1 | C1' | 5.6° | 0.4° |
| C6 | C9 | C10 | S | 0.0° | 0.0° |
| C9 | C6 | N1 | C5 | 179.2° | 179.9° |
| C9 | C6 | N1 | C2 | 178.0° | 180.0° |
| C9 | C6 | C5 | S | 0.2° | 0.0° |
| C9 | C6 | C5 | C4 | 177.9° | 179.5° |
| C6 | C9 | C10 | H5 | 180.0° | 180.0° |
| C1' | N1 | C6 | C2 | 176.4° | 179.6° |
| C1' | N1 | C6 | C5 | 175.1° | 179.7° |
| C1' | N1 | C2 | O2 | 2.2° | 0.1° |
| C1' | N1 | C2 | N3 | 176.4° | 180.0° |
| N1 | C1' | C2' | H2' | 31.0° | 24.2° |
| C10 | S | C5 | C6 | 0.2° | 0.0° |
| C10 | S | C5 | C4 | 177.9° | 179.4° |
| S | C10 | C9 | H10 | 180.0° | 179.9° |
| N1 | C6 | C5 | S | 179.6° | 180.0° |
| N1 | C6 | C5 | C4 | 1.5° | 0.5° |
| C6 | N1 | C2 | O2 | 178.7° | 179.7° |
| C6 | N1 | C2 | N3 | 0.1° | 0.4° |
| C6 | N1 | C1' | H1' | 177.7° | 7.5° |
| N1 | C6 | C9 | H10 | 0.6° | 0.0° |
| C5 | C6 | N1 | C2 | 1.3° | 0.1° |
| C6 | C5 | S | C4 | 178.0° | 179.4° |
| C6 | C5 | C4 | N3 | 0.5° | 0.7° |
| C6 | C5 | C4 | O4 | 179.6° | 180.0° |
| C5 | C6 | C9 | H10 | 179.9° | 179.9° |
| N1 | C2 | O2 | N3 | 178.5° | 179.9° |
| N1 | C2 | N3 | C4 | 0.9° | 0.1° |
| C2 | N1 | C1' | H1' | 5.8° | 172.8° |
| N1 | C2 | N3 | H3 | 179.1° | 180.0° |
| S | C5 | C4 | N3 | 178.3° | 179.9° |
| S | C5 | C4 | O4 | 1.7° | 0.6° |
| C5 | S | C10 | H5 | 179.9° | 180.0° |
| C5 | C4 | N3 | C2 | 0.8° | 0.5° |
| C5 | C4 | N3 | O4 | 180.0° | 179.3° |
| C5 | C4 | N3 | H3 | 179.2° | 179.4° |
| O2 | C2 | N3 | C4 | 177.7° | 180.0° |
| O2 | C2 | N3 | H3 | 2.4° | 0.1° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.2° | 179.7° |
| O4 | C4 | N3 | H3 | 0.8° | 0.2° |
| H3' | C3' | O3' | HO3' | 59.3° | 61.2° |
| H3' | C3' | C2' | H2' | 5.8° | 0.0° |
| H3' | C3' | C4' | H4' | 142.5° | 146.5° |
| HO2' | O2' | C2' | H2' | 57.5° | 61.3° |
| H2' | C2' | C1' | H1' | 153.0° | 146.4° |
| H5 | C10 | C9 | H10 | 0.0° | 0.1° |
| H4' | C4' | C5' | H5' | 162.4° | 67.3° |
| H4' | C4' | C5' | H5'' | 77.1° | 172.7° |
