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SummaryGeometryRelated PDB entries

A1EKM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O08P03doub1.48Å1.50Å
O09P03sing1.61Å1.50Å
P03O14sing1.61Å1.50Å
P03O07sing1.61Å1.64Å
O07P02sing1.61Å1.64Å
O12P01doub1.48Å1.51Å
O11P02doub1.48Å1.50Å
P02O06sing1.61Å1.64Å
P02O13sing1.61Å1.50Å
C10C06sing1.51Å1.52Å
O06P01sing1.61Å1.65Å
O10P01sing1.61Å1.50Å
P01O05sing1.61Å1.64Å
O04C09doub1.22Å1.18Å
C06C09sing1.42Å1.52Å
C06C07doub1.35Å1.34Å
C09N02sing1.35Å1.41Å
O05C05sing1.43Å1.40Å
C07N01sing1.37Å1.48Å
C05C01sing1.53Å1.48Å
N02C08sing1.35Å1.42Å
F01C03sing1.40Å1.40Å
N01C08sing1.35Å1.44Å
N01C04sing1.46Å1.41Å
C02C01sing1.55Å1.48Å
C02O02sing1.43Å1.44Å
C02C03sing1.55Å1.45Å
C08O03doub1.22Å1.18Å
C01O01sing1.44Å1.48Å
O01C04sing1.44Å1.48Å
C03C04sing1.54Å1.48Å
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C10H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C02H5sing1.09Å1.10Å
C03H6sing1.09Å1.10Å
C04H7sing1.09Å1.10Å
C05H8sing1.09Å1.10Å
C05H9sing1.09Å1.10Å
C07H10sing1.08Å1.08Å
N02H11sing0.97Å1.00Å
O02H12sing0.97Å0.95Å
O09H13sing0.97Å0.95Å
O10H14sing0.97Å0.95Å
O13H15sing0.97Å0.95Å
O14H16sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O08P03O09109.1°109.4°
O08P03O14109.4°109.5°
O08P03O07110.0°109.5°
O09P03O14110.1°109.5°
O09P03O07109.6°109.4°
P03O09H13109.5°114.0°
O14P03O07108.6°109.5°
P03O14H16109.5°114.0°
P03O07P02124.3°134.0°
O07P02O11109.1°109.5°
O07P02O06110.7°109.5°
O07P02O13110.1°109.5°
O12P01O06110.0°109.5°
O12P01O10109.3°109.5°
O12P01O05108.5°109.5°
O11P02O06109.2°109.5°
O11P02O13108.7°109.4°
O06P02O13108.9°109.5°
P02O06P01122.1°134.0°
P02O13H15109.5°114.0°
C10C06C09119.6°120.4°
C10C06C07120.3°120.4°
C06C10H1109.5°109.4°
C06C10H2109.5°109.5°
C06C10H3109.5°109.5°
O06P01O10109.2°109.5°
O06P01O05109.7°109.5°
O10P01O05110.2°109.4°
P01O10H14109.5°114.0°
P01O05C05118.7°123.0°
O04C09C06120.1°120.3°
O04C09N02120.1°120.3°
C09C06C07120.1°119.1°
C06C09N02119.8°119.3°
C06C07N01120.2°119.7°
C06C07H10119.9°120.2°
C09N02C08119.9°120.3°
C09N02H11120.0°119.9°
O05C05C01109.0°109.4°
O05C05H8109.6°109.5°
O05C05H9109.6°109.5°
C07N01C08119.8°120.6°
C07N01C04120.9°119.7°
N01C07H10119.9°120.1°
C05C01C02108.9°110.7°
C05C01O01109.7°110.6°
C05C01H4110.7°110.6°
C01C05H8109.6°109.5°
C01C05H9109.6°109.4°
N02C08N01120.2°121.0°
N02C08O03120.2°119.5°
C08N02H11120.0°119.8°
F01C03C02109.2°110.5°
F01C03C04110.0°110.5°
F01C03H6110.8°110.5°
C08N01C04119.3°119.7°
N01C08O03119.6°119.5°
N01C04O01110.5°110.0°
N01C04C03110.1°109.9°
N01C04H7110.4°109.9°
C01C02O02109.9°110.9°
C01C02C03105.1°102.1°
C02C01O01105.9°103.5°
C02C01H4110.8°110.6°
C01C02H5110.4°110.9°
O02C02C03109.5°110.9°
O02C02H5111.0°110.8°
C02O02H12109.5°114.0°
C02C03C04107.2°104.2°
C03C02H5110.8°110.9°
C02C03H6110.0°110.5°
C01O01C04105.9°107.0°
O01C01H4110.8°110.6°
O01C04C03107.0°107.3°
O01C04H7109.4°109.9°
C04C03H6109.6°110.5°
C03C04H7109.4°109.9°
H1C10H2109.5°109.5°
H1C10H3109.4°109.5°
H2C10H3109.4°109.5°
H8C05H9109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O08P03O09O14120.1°120.0°
O08P03O09O07120.5°120.0°
O08P03O14O07120.1°120.0°
O08P03O07P02169.0°39.9°
O08P03O09H130.0°180.0°
O08P03O14H160.0°60.0°
O09P03O14O07120.0°120.0°
O09P03O07P0271.0°80.0°
O09P03O14H16119.9°60.0°
O14P03O07P0249.3°160.0°
O14P03O09H13120.1°60.0°
P03O07P02O11109.0°40.0°
P03O07P02O0611.2°160.0°
P03O07P02O13131.7°79.9°
O07P03O09H13120.5°60.0°
O07P03O14H16120.1°180.0°
O07P02O11O06121.2°120.0°
O07P02O11O13120.1°120.0°
O07P02O06O13121.2°120.0°
O07P02O06P01131.1°165.0°
O07P02O13H15119.5°60.0°
O12P01O06P0255.8°44.9°
O12P01O06O10119.9°120.0°
O12P01O06O05119.3°120.1°
O12P01O10O05119.1°120.0°
O12P01O05C05167.9°54.9°
O12P01O10H140.0°180.0°
O11P02O06O13118.6°120.0°
O11P02O06P0110.9°45.0°
O11P02O13H150.0°180.0°
P02O06P01O10175.7°75.0°
P02O06P01O0563.5°165.0°
O06P02O13H15118.9°60.0°
O13P02O06P01107.7°75.0°
C10C06C09O040.6°0.0°
C10C06C09C07179.3°179.7°
C10C06C09N02179.4°180.0°
C10C06C07N01179.2°180.0°
C06C10H1H2120.0°120.0°
C06C10H1H3120.0°120.0°
C06C10H2H3120.0°120.0°
C10C06C07H100.8°0.0°
O06P01O10O05120.6°120.0°
O06P01O05C0547.7°175.0°
O06P01O10H14120.4°60.0°
O10P01O05C0572.5°65.1°
P01O05C05C01158.8°180.0°
P01O05C05H838.9°59.9°
P01O05C05H981.3°60.1°
O05P01O10H14119.1°60.0°
O04C09C06N02180.0°180.0°
O04C09C06C07179.9°179.7°
O04C09N02C08180.0°180.0°
O04C09N02H110.0°0.1°
C09C06C07N010.1°0.3°
C06C09N02C080.0°0.0°
C09C06C10H1180.0°0.0°
C09C06C10H260.0°120.0°
C09C06C10H360.0°120.0°
C09C06C07H10179.9°179.7°
C06C09N02H11180.0°179.9°
C07C06C09N020.0°0.3°
C06C07N01H10180.0°180.0°
C06C07N01C080.3°0.0°
C06C07N01C04179.9°180.0°
C07C06C10H10.7°179.7°
C07C06C10H2119.4°59.7°
C07C06C10H3120.7°60.3°
C09N02C08H11180.0°179.9°
C09N02C08N010.2°0.3°
C09N02C08O03179.9°180.0°
O05C05C01H8119.9°120.0°
O05C05C01H9119.9°120.0°
O05C05C01C0276.8°179.4°
O05C05C01O0138.6°66.4°
O05C05C01H4161.2°56.5°
O05C05H8H9120.3°120.0°
C07N01C08N020.4°0.3°
C07N01C08C04179.5°180.0°
C07N01C08O03180.0°180.0°
C07N01C04O0123.9°127.1°
C07N01C04C0394.0°115.0°
C07N01C04H7145.1°6.0°
C05C01C02O01117.8°118.6°
C05C01C02H4122.0°122.9°
C05C01C02O0293.7°86.2°
C05C01C02C03148.6°155.6°
C05C01O01H4122.6°122.9°
C05C01O01C04141.8°158.7°
C05C01C02H529.1°37.4°
C01C05H8H9120.2°120.0°
N02C08N01O03179.7°179.6°
N02C08N01C04179.9°179.7°
F01C03C04N018.4°2.9°
F01C03C02C01144.1°139.6°
F01C03C02O0297.8°102.2°
F01C03C02C04119.2°118.7°
F01C03C02H6121.7°122.6°
F01C03C04O01128.5°116.6°
F01C03C04H6122.0°122.7°
F01C03C02H524.9°21.4°
F01C03C04H7113.1°124.0°
C08N01C04O01155.6°52.8°
C08N01C04C0386.5°65.0°
C08N01C04H734.5°174.0°
C08N01C07H10179.6°180.0°
N01C08N02H11179.8°179.7°
N01C04C03C02110.2°121.6°
C04N01C08O030.4°0.1°
N01C04O01C01129.0°146.0°
N01C04O01C03119.8°119.5°
N01C04O01H7121.8°121.1°
N01C04C03H7121.5°121.0°
N01C04C03H6130.5°119.7°
C04N01C07H100.1°0.0°
C01C02O02C03115.0°112.7°
C01C02O02H5122.4°123.6°
C01C02C03H5119.3°118.2°
C02C01O01H4120.2°118.5°
C02C01O01C0424.6°40.1°
C01C02C03C0425.0°20.9°
C01C02C03H694.1°97.8°
C02C01C05H843.1°59.4°
C02C01C05H9163.3°60.6°
C01C02O02H12180.0°180.0°
O02C02C03H5122.7°123.6°
O02C02C01O01148.5°155.2°
O02C02C03C04143.0°139.1°
O02C02C01H428.3°36.7°
O02C02C03H623.9°20.4°
C03C02C01O0130.7°37.0°
C02C03C04O019.9°2.0°
C02C03C04H6119.3°118.7°
C03C02C01H489.4°81.5°
C02C03C04H7128.3°117.4°
C03C02O02H1265.0°67.3°
O03C08N02H110.2°0.1°
C01O01C04C039.2°26.5°
O01C01C02H588.8°81.2°
C01O01C04H7109.2°92.9°
O01C01C05H8158.5°173.5°
O01C01C05H981.3°53.5°
O01C04C03H7118.4°119.4°
C04O01C01H495.6°78.4°
O01C04C03H6109.5°120.7°
C04C03C02H594.3°97.3°
H1C10H2H3120.0°120.0°
H4C01C02H5151.1°160.3°
H4C01C05H878.9°63.6°
H4C01C05H941.3°176.4°
H5C02C03H6146.6°144.0°
H5C02O02H1257.6°56.4°
H6C03C04H78.9°1.3°

248335

PDB entries from 2026-01-28

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