English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

A1EAI

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C6	doub	1.21Å	1.26Å
O2	C6	sing	1.34Å	1.26Å
C6	C5	sing	1.51Å	1.52Å
C5	C3	sing	1.52Å	1.51Å
C5	N1	sing	1.48Å	1.49Å
C1	C2	sing	1.51Å	1.49Å
C3	C2	doub	1.31Å	1.33Å
C3	C4	sing	1.51Å	1.52Å
N1	C4	sing	1.48Å	1.49Å
C4	H1	sing	1.09Å	1.10Å
C4	H2	sing	1.09Å	1.10Å
C5	H3	sing	1.09Å	1.10Å
N1	H4	sing	1.01Å	1.00Å
C1	H6	sing	1.09Å	1.10Å
C1	H7	sing	1.09Å	1.10Å
C1	H8	sing	1.09Å	1.10Å
C2	H9	sing	1.08Å	1.08Å
O2	H10	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C6	O2	121.9°	120.0°
O1	C6	C5	116.9°	120.0°
O2	C6	C5	121.1°	120.0°
C6	O2	H10	109.5°	117.0°
C6	C5	C3	122.8°	113.5°
C6	C5	N1	119.5°	113.5°
C6	C5	H3	109.2°	112.8°
C3	C5	N1	84.0°	87.7°
C5	C3	C2	142.4°	137.6°
C5	C3	C4	81.1°	84.8°
C3	C5	H3	109.3°	113.5°
C5	N1	C4	83.2°	87.5°
N1	C5	H3	109.6°	113.5°
C5	N1	H4	115.6°	111.0°
C1	C2	C3	126.2°	120.0°
C2	C1	H6	109.5°	109.5°
C2	C1	H7	109.5°	109.4°
C2	C1	H8	109.5°	109.5°
C1	C2	H9	116.9°	120.0°
C2	C3	C4	136.3°	137.6°
C3	C2	H9	116.9°	120.0°
C3	C4	N1	83.8°	87.7°
C3	C4	H1	115.5°	113.6°
C3	C4	H2	115.4°	113.5°
N1	C4	H1	115.5°	113.6°
N1	C4	H2	115.5°	113.5°
C4	N1	H4	115.6°	110.9°
H1	C4	H2	109.4°	112.7°
H6	C1	H7	109.5°	109.4°
H6	C1	H8	109.4°	109.5°
H7	C1	H8	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C6	O2	C5	176.2°	179.9°
O1	C6	C5	C3	58.7°	100.0°
O1	C6	C5	N1	161.6°	1.9°
O1	C6	C5	H3	71.1°	129.1°
O1	C6	O2	H10	0.0°	0.1°
O2	C6	C5	C3	124.8°	80.0°
O2	C6	C5	N1	22.0°	178.1°
O2	C6	C5	H3	105.4°	51.0°
C6	C5	C3	N1	121.5°	114.7°
C6	C5	C3	H3	129.8°	130.6°
C6	C5	N1	H3	127.1°	130.6°
C6	C5	C3	C2	14.9°	39.6°
C6	C5	C3	C4	159.5°	140.4°
C6	C5	N1	C4	163.4°	141.1°
C6	C5	N1	H4	81.4°	107.4°
C5	C6	O2	H10	176.2°	180.0°
C3	C5	N1	H3	108.4°	114.7°
C5	C3	C2	C1	0.9°	0.1°
C5	C3	C2	C4	172.0°	179.9°
C3	C5	N1	C4	38.9°	26.4°
C5	C3	C4	H1	153.4°	89.1°
C5	C3	C4	H2	77.2°	140.4°
C3	C5	N1	H4	154.0°	137.9°
C5	C3	C2	H9	179.1°	180.0°
N1	C5	C3	C2	136.4°	154.3°
C5	N1	C4	H4	115.1°	111.6°
C5	N1	C4	H1	154.0°	88.4°
C5	N1	C4	H2	76.6°	141.1°
C1	C2	C3	H9	180.0°	180.0°
C1	C2	C3	C4	171.1°	180.0°
C2	C1	H6	H7	120.0°	119.9°
C2	C1	H6	H8	120.0°	120.0°
C2	C1	H7	H8	120.0°	120.0°
C2	C3	C4	N1	136.9°	154.3°
C2	C3	C4	H1	21.6°	90.9°
C2	C3	C4	H2	107.8°	39.6°
C2	C3	C5	H3	114.8°	91.0°
C3	C2	C1	H6	180.0°	59.9°
C3	C2	C1	H7	60.0°	60.0°
C3	C2	C1	H8	60.0°	180.0°
C3	C4	N1	H1	115.3°	114.8°
C3	C4	N1	H2	115.3°	114.7°
C3	C4	H1	H2	132.3°	130.9°
C4	C3	C5	H3	70.7°	89.0°
C3	C4	N1	H4	153.8°	138.0°
C4	C3	C2	H9	8.9°	0.1°
N1	C4	H1	H2	132.3°	130.9°
C4	N1	C5	H3	69.4°	88.3°
H1	C4	N1	H4	90.9°	23.2°
H2	C4	N1	H4	38.5°	107.3°
H3	C5	N1	H4	45.7°	23.2°
H6	C1	H7	H8	120.0°	120.0°
H6	C1	C2	H9	0.0°	120.0°
H7	C1	C2	H9	120.1°	120.0°
H8	C1	C2	H9	120.0°	0.0°

251801

PDB entries from 2026-04-08

PDB statistics

PDBj update info

Contact PDBj

numon