A1DYR

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2	C3	sing	1.53Å	1.54Å
C2	N1	sing	1.46Å	1.46Å
C3	C4	sing	1.54Å	1.53Å
N1	C1	sing	1.33Å	1.34Å
C4	C5	sing	1.53Å	1.55Å
C1	C5	sing	1.50Å	1.54Å
C1	O1	doub	1.21Å	1.23Å
C5	N2	sing	1.47Å	1.46Å
N2	C6	sing	1.38Å	1.40Å
C6	C11	doub	1.40Å	1.42Å	Aromatic
C6	N3	sing	1.33Å	1.36Å	Aromatic
C10	C11	sing	1.46Å	1.44Å	Aromatic
C10	C9	doub	1.34Å	1.37Å	Aromatic
C11	C8	sing	1.41Å	1.42Å	Aromatic
N3	C7	doub	1.32Å	1.33Å	Aromatic
C9	N5	sing	1.37Å	1.38Å	Aromatic
C8	N5	sing	1.37Å	1.38Å	Aromatic
C8	N4	doub	1.33Å	1.36Å	Aromatic
C7	N4	sing	1.32Å	1.33Å	Aromatic
C10	H13	sing	1.08Å	1.08Å
C2	H3	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C3	H4	sing	1.09Å	1.10Å
C3	H5	sing	1.09Å	1.10Å
C4	H7	sing	1.09Å	1.10Å
C4	H6	sing	1.09Å	1.10Å
C5	H8	sing	1.09Å	1.10Å
C7	H10	sing	1.08Å	1.08Å
C9	H12	sing	1.08Å	1.08Å
N1	H1	sing	0.97Å	1.00Å
N2	H9	sing	0.97Å	1.00Å
N5	H11	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C3	C2	N1	115.4°	110.5°
C2	C3	C4	115.0°	108.6°
C3	C2	H3	108.0°	109.3°
C3	C2	H2	108.0°	109.3°
C2	C3	H4	108.1°	109.6°
C2	C3	H5	108.1°	109.6°
C2	N1	C1	127.3°	124.1°
N1	C2	H3	108.0°	109.4°
N1	C2	H2	108.0°	109.2°
C2	N1	H1	116.4°	117.9°
C3	C4	C5	117.2°	108.1°
C4	C3	H4	108.1°	109.8°
C4	C3	H5	108.1°	109.6°
C3	C4	H7	107.5°	109.7°
C3	C4	H6	107.5°	109.6°
N1	C1	C5	120.1°	123.5°
N1	C1	O1	120.8°	118.2°
C1	N1	H1	116.4°	118.0°
C4	C5	C1	116.5°	109.9°
C4	C5	N2	111.7°	109.4°
C5	C4	H7	107.5°	109.6°
C5	C4	H6	107.5°	110.1°
C4	C5	H8	105.6°	109.5°
C5	C1	O1	119.1°	118.2°
C1	C5	N2	110.0°	109.4°
C1	C5	H8	105.7°	109.4°
C5	N2	C6	120.8°	120.0°
N2	C5	H8	106.6°	109.3°
C5	N2	H9	106.6°	120.0°
N2	C6	C11	120.9°	120.8°
N2	C6	N3	119.9°	120.9°
C6	N2	H9	106.6°	120.0°
C11	C6	N3	119.2°	118.3°
C6	C11	C10	137.4°	135.1°
C6	C11	C8	115.1°	118.7°
C6	N3	C7	119.0°	121.0°
C11	C10	C9	107.0°	106.8°
C10	C11	C8	107.5°	106.3°
C11	C10	H13	126.5°	126.7°
C10	C9	N5	108.7°	109.8°
C9	C10	H13	126.5°	126.5°
C10	C9	H12	125.6°	125.1°
C11	C8	N5	106.5°	107.1°
C11	C8	N4	126.1°	118.6°
N3	C7	N4	128.4°	122.7°
N3	C7	H10	115.8°	118.7°
C9	N5	C8	110.3°	110.1°
N5	C9	H12	125.7°	125.1°
C9	N5	H11	124.8°	125.0°
N5	C8	N4	127.4°	134.3°
C8	N5	H11	124.9°	125.0°
C8	N4	C7	112.2°	120.7°
N4	C7	H10	115.8°	118.6°
H3	C2	H2	109.5°	109.2°
H4	C3	H5	109.5°	109.7°
H7	C4	H6	109.5°	109.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C3	C2	N1	H3	120.9°	120.3°
C3	C2	N1	H2	120.9°	120.2°
C2	C3	C4	H4	120.8°	119.8°
C2	C3	C4	H5	120.8°	119.7°
C3	C2	N1	C1	16.1°	19.0°
C2	C3	C4	C5	32.4°	67.8°
C3	C2	H3	H2	117.3°	119.5°
C2	C3	H4	H5	117.5°	120.4°
C2	C3	C4	H7	153.5°	172.7°
C2	C3	C4	H6	88.7°	52.2°
C3	C2	N1	H1	164.0°	161.0°
N1	C2	C3	C4	32.0°	50.8°
C2	N1	C1	H1	180.0°	180.0°
C2	N1	C1	C5	1.1°	2.2°
C2	N1	C1	O1	179.8°	178.1°
N1	C2	H3	H2	117.3°	119.5°
N1	C2	C3	H4	88.8°	69.1°
N1	C2	C3	H5	152.8°	170.5°
C3	C4	C5	H7	121.1°	119.5°
C3	C4	C5	H6	121.1°	119.8°
C3	C4	C5	C1	16.1°	49.3°
C3	C4	C5	N2	143.6°	169.3°
C4	C3	C2	H3	88.8°	69.5°
C4	C3	C2	H2	152.9°	171.1°
C4	C3	H4	H5	117.5°	120.4°
C3	C4	H7	H6	116.5°	120.5°
C3	C4	C5	H8	100.9°	70.9°
N1	C1	C5	C4	1.2°	17.9°
N1	C1	C5	O1	179.1°	179.7°
N1	C1	C5	N2	127.2°	138.0°
C1	N1	C2	H3	104.8°	101.3°
C1	N1	C2	H2	137.0°	139.3°
N1	C1	C5	H8	118.1°	102.3°
C4	C5	C1	N2	128.4°	120.1°
C4	C5	C1	H8	116.9°	120.2°
C4	C5	C1	O1	179.7°	162.4°
C4	C5	N2	H8	114.9°	119.8°
C4	C5	N2	C6	121.0°	154.6°
C5	C4	C3	H4	88.4°	52.0°
C5	C4	C3	H5	153.2°	172.5°
C5	C4	H7	H6	116.5°	121.0°
C4	C5	N2	H9	0.6°	25.4°
C1	C5	N2	H8	114.1°	119.8°
C1	C5	N2	C6	108.0°	85.0°
C1	C5	C4	H7	137.2°	168.8°
C1	C5	C4	H6	105.0°	70.5°
C5	C1	N1	H1	178.9°	177.8°
C1	C5	N2	H9	130.4°	95.0°
O1	C1	C5	N2	51.9°	42.4°
O1	C1	C5	H8	62.8°	77.4°
O1	C1	N1	H1	0.2°	1.9°
C5	N2	C6	H9	121.6°	180.0°
C5	N2	C6	C11	173.1°	180.0°
C5	N2	C6	N3	6.8°	0.0°
N2	C5	C4	H7	95.3°	71.2°
N2	C5	C4	H6	22.5°	49.6°
N2	C6	C11	N3	179.9°	180.0°
N2	C6	C11	C10	0.5°	0.3°
N2	C6	C11	C8	179.9°	180.0°
N2	C6	N3	C7	179.9°	180.0°
C6	N2	C5	H8	6.1°	34.7°
C6	C11	C10	C8	179.7°	179.7°
C6	C11	C10	C9	179.9°	179.8°
C11	C6	N3	C7	0.0°	0.0°
C6	C11	C8	N5	179.9°	179.8°
C6	C11	C8	N4	0.0°	0.2°
C6	C11	C10	H13	0.1°	0.3°
C11	C6	N2	H9	65.3°	0.0°
N3	C6	C11	C10	179.6°	179.7°
N3	C6	C11	C8	0.1°	0.0°
C6	N3	C7	N4	0.0°	0.2°
C6	N3	C7	H10	180.0°	179.8°
N3	C6	N2	H9	114.8°	180.0°
C11	C10	C9	H13	180.0°	180.0°
C11	C10	C9	N5	0.5°	0.0°
C10	C11	C8	N5	0.2°	0.0°
C10	C11	C8	N4	179.7°	180.0°
C11	C10	C9	H12	179.5°	180.0°
C9	C10	C11	C8	0.4°	0.0°
C10	C9	N5	H12	180.0°	180.0°
C10	C9	N5	C8	0.4°	0.0°
C10	C9	N5	H11	179.6°	179.9°
C11	C8	N5	C9	0.1°	0.0°
C11	C8	N5	N4	179.9°	180.0°
C11	C8	N4	C7	0.0°	0.4°
C8	C11	C10	H13	179.6°	180.0°
C11	C8	N5	H11	179.9°	180.0°
N3	C7	N4	C8	0.1°	0.5°
N3	C7	N4	H10	180.0°	179.5°
C9	N5	C8	H11	180.0°	180.0°
C9	N5	C8	N4	180.0°	180.0°
N5	C9	C10	H13	179.5°	180.0°
N5	C8	N4	C7	179.8°	179.6°
C8	N5	C9	H12	179.6°	180.0°
C8	N4	C7	H10	180.0°	180.0°
N4	C8	N5	H11	0.0°	0.0°
H13	C10	C9	H12	0.5°	0.1°
H3	C2	C3	H4	150.3°	170.6°
H3	C2	C3	H5	31.9°	50.1°
H3	C2	N1	H1	75.2°	78.7°
H2	C2	C3	H4	32.1°	51.2°
H2	C2	C3	H5	86.3°	69.3°
H2	C2	N1	H1	43.1°	40.7°
H4	C3	C4	H7	32.7°	67.5°
H4	C3	C4	H6	150.5°	172.0°
H5	C3	C4	H7	85.7°	53.0°
H5	C3	C4	H6	32.1°	67.5°
H7	C4	C5	H8	20.2°	48.6°
H6	C4	C5	H8	138.0°	169.3°
H8	C5	N2	H9	115.5°	145.2°
H12	C9	N5	H11	0.4°	0.0°

Release date:	2026-11-04
Definition date:	2026-08-25
Last modified:	2026-10-30
Release status:	REL
Processing site:	RCSB
Derived from:	15ER