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Summary Geometry Related PDB entries

A1DOV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	doub	1.21Å	1.24Å
C1	N1	sing	1.35Å	1.33Å
N1	C2	sing	1.46Å	1.46Å
C2	C3	sing	1.51Å	1.48Å
C3	C4	doub	1.34Å	1.34Å	Aromatic
C4	C5	sing	1.41Å	1.42Å	Aromatic
C5	C6	doub	1.35Å	1.37Å	Aromatic
C6	O2	sing	1.34Å	1.38Å	Aromatic
C1	C7	sing	1.48Å	1.50Å
C7	C8	doub	1.39Å	1.38Å	Aromatic
C8	N2	sing	1.32Å	1.34Å	Aromatic
N2	C9	doub	1.32Å	1.34Å	Aromatic
C9	C10	sing	1.39Å	1.38Å	Aromatic
C10	N3	doub	1.32Å	1.34Å	Aromatic
C3	O2	sing	1.34Å	1.37Å	Aromatic
C7	N3	sing	1.33Å	1.34Å	Aromatic
N1	H1	sing	0.97Å	1.00Å
C2	H2	sing	1.09Å	1.10Å
C2	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C8	H7	sing	1.08Å	1.08Å
C9	H8	sing	1.08Å	1.08Å
C10	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	N1	122.6°	120.0°
O1	C1	C7	122.3°	120.0°
C1	N1	C2	121.5°	120.0°
N1	C1	C7	115.1°	120.0°
C1	N1	H1	119.2°	120.0°
N1	C2	C3	113.3°	109.5°
C2	N1	H1	119.2°	120.0°
N1	C2	H2	108.5°	109.5°
N1	C2	H3	108.5°	109.5°
C2	C3	C4	131.9°	125.8°
C2	C3	O2	117.7°	125.8°
C3	C2	H2	108.5°	109.5°
C3	C2	H3	108.5°	109.5°
C3	C4	C5	107.2°	106.9°
C4	C3	O2	110.3°	108.4°
C3	C4	H4	126.4°	126.6°
C4	C5	C6	106.4°	106.8°
C5	C4	H4	126.4°	126.5°
C4	C5	H5	126.8°	126.6°
C5	C6	O2	109.0°	108.4°
C6	C5	H5	126.8°	126.6°
C5	C6	H6	125.5°	125.8°
C6	O2	C3	107.0°	109.5°
O2	C6	H6	125.5°	125.8°
C1	C7	C8	120.7°	120.1°
C1	C7	N3	117.7°	120.1°
C7	C8	N2	122.0°	119.9°
C8	C7	N3	121.7°	119.8°
C7	C8	H7	119.0°	120.0°
C8	N2	C9	116.2°	120.1°
N2	C8	H7	119.0°	120.1°
N2	C9	C10	122.0°	120.2°
N2	C9	H8	119.0°	119.9°
C9	C10	N3	121.9°	120.1°
C10	C9	H8	119.0°	119.9°
C9	C10	H9	119.0°	119.9°
C10	N3	C7	116.2°	120.0°
N3	C10	H9	119.1°	120.0°
H2	C2	H3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	N1	C7	177.7°	179.7°
O1	C1	N1	C2	5.3°	0.0°
O1	C1	C7	C8	13.5°	0.0°
O1	C1	C7	N3	166.2°	179.8°
O1	C1	N1	H1	174.7°	180.0°
C1	N1	C2	H1	180.0°	180.0°
C1	N1	C2	C3	78.1°	180.0°
N1	C1	C7	C8	168.8°	179.7°
N1	C1	C7	N3	11.5°	0.5°
C1	N1	C2	H2	42.4°	60.0°
C1	N1	C2	H3	161.3°	60.0°
N1	C2	C3	H2	120.5°	120.0°
N1	C2	C3	H3	120.6°	120.0°
N1	C2	C3	C4	61.9°	90.0°
C2	N1	C1	C7	172.4°	179.7°
N1	C2	C3	O2	119.0°	90.3°
N1	C2	H2	H3	118.3°	120.0°
C2	C3	C4	O2	179.1°	179.7°
C2	C3	C4	C5	179.6°	180.0°
C2	C3	O2	C6	180.0°	179.8°
C3	C2	N1	H1	101.8°	0.0°
C3	C2	H2	H3	118.2°	120.0°
C2	C3	C4	H4	0.4°	0.0°
C3	C4	C5	H4	180.0°	180.0°
C3	C4	C5	C6	0.0°	0.0°
C4	C3	O2	C6	0.7°	0.4°
C4	C3	C2	H2	177.6°	30.0°
C4	C3	C2	H3	58.7°	150.0°
C3	C4	C5	H5	180.0°	180.0°
C4	C5	C6	H5	180.0°	179.9°
C4	C5	C6	O2	0.4°	0.3°
C5	C4	C3	O2	0.4°	0.3°
C4	C5	C6	H6	179.6°	180.0°
C5	C6	O2	H6	180.0°	179.8°
C5	C6	O2	C3	0.7°	0.5°
C6	C5	C4	H4	180.0°	180.0°
O2	C6	C5	H5	179.6°	179.8°
C1	C7	C8	N3	179.6°	179.7°
C1	C7	C8	N2	178.9°	180.0°
C1	C7	N3	C10	179.1°	179.7°
C7	C1	N1	H1	7.6°	0.3°
C1	C7	C8	H7	1.1°	0.1°
C7	C8	N2	H7	180.0°	179.9°
C7	C8	N2	C9	0.7°	0.0°
C8	C7	N3	C10	0.5°	0.5°
C8	N2	C9	C10	0.5°	0.0°
N2	C8	C7	N3	0.8°	0.3°
C8	N2	C9	H8	179.5°	180.0°
N2	C9	C10	H8	180.0°	180.0°
N2	C9	C10	N3	0.3°	0.3°
C9	N2	C8	H7	179.3°	180.0°
N2	C9	C10	H9	179.7°	180.0°
C9	C10	N3	H9	180.0°	179.7°
C9	C10	N3	C7	0.3°	0.5°
N3	C10	C9	H8	179.7°	179.7°
O2	C3	C2	H2	1.5°	149.7°
O2	C3	C2	H3	120.4°	29.7°
O2	C3	C4	H4	179.6°	179.8°
C3	O2	C6	H6	179.3°	179.8°
N3	C7	C8	H7	179.2°	179.8°
C7	N3	C10	H9	179.7°	179.7°
H1	N1	C2	H2	137.6°	120.0°
H1	N1	C2	H3	18.8°	120.0°
H4	C4	C5	H5	0.0°	0.0°
H5	C5	C6	H6	0.5°	0.0°
H8	C9	C10	H9	0.3°	0.0°

258009

PDB entries from 2026-08-12

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