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Summary Geometry Related PDB entries

A1DOF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	sing	1.35Å	1.33Å
C1	O1	doub	1.22Å	1.23Å
C1	C2	sing	1.46Å	1.46Å
C2	C3	doub	1.38Å	1.34Å	Aromatic
C3	C4	sing	1.40Å	1.41Å	Aromatic
C4	C5	doub	1.37Å	1.35Å	Aromatic
C5	C6	sing	1.48Å	1.44Å
C6	C7	doub	1.40Å	1.39Å	Aromatic
C7	C8	sing	1.38Å	1.38Å	Aromatic
C8	C9	doub	1.38Å	1.37Å	Aromatic
C9	C10	sing	1.38Å	1.38Å	Aromatic
C10	C11	doub	1.38Å	1.38Å	Aromatic
C5	O2	sing	1.34Å	1.37Å	Aromatic
C2	O2	sing	1.35Å	1.36Å	Aromatic
C6	C11	sing	1.40Å	1.38Å	Aromatic
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
C3	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C7	H5	sing	1.08Å	1.08Å
C8	H6	sing	1.08Å	1.08Å
C9	H7	sing	1.08Å	1.08Å
C10	H8	sing	1.08Å	1.08Å
C11	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C1	O1	124.0°	120.0°
N1	C1	C2	116.6°	120.0°
C1	N1	H1	120.0°	120.0°
C1	N1	H2	120.0°	120.0°
O1	C1	C2	119.4°	120.1°
C1	C2	C3	131.6°	126.0°
C1	C2	O2	118.1°	126.0°
C2	C3	C4	106.7°	106.8°
C3	C2	O2	110.3°	108.0°
C2	C3	H3	126.6°	126.6°
C3	C4	C5	107.0°	107.1°
C4	C3	H3	126.7°	126.6°
C3	C4	H4	126.5°	126.5°
C4	C5	C6	133.2°	125.7°
C4	C5	O2	109.5°	108.7°
C5	C4	H4	126.5°	126.4°
C5	C6	C7	121.3°	120.1°
C6	C5	O2	117.4°	125.7°
C5	C6	C11	119.5°	120.1°
C6	C7	C8	120.8°	119.8°
C7	C6	C11	119.1°	119.7°
C6	C7	H5	119.6°	120.1°
C7	C8	C9	119.5°	120.2°
C8	C7	H5	119.6°	120.1°
C7	C8	H6	120.2°	119.9°
C8	C9	C10	120.1°	120.3°
C9	C8	H6	120.3°	120.0°
C8	C9	H7	119.9°	119.8°
C9	C10	C11	120.6°	120.1°
C10	C9	H7	119.9°	119.8°
C9	C10	H8	119.7°	119.9°
C10	C11	C6	119.8°	119.8°
C11	C10	H8	119.7°	119.9°
C10	C11	H9	120.1°	120.1°
C5	O2	C2	106.6°	109.4°
C6	C11	H9	120.1°	120.1°
H1	N1	H2	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C1	O1	C2	176.0°	179.9°
N1	C1	C2	C3	164.0°	180.0°
N1	C1	C2	O2	13.5°	0.3°
C1	N1	H1	H2	180.0°	179.8°
O1	C1	C2	C3	12.2°	0.1°
O1	C1	C2	O2	170.3°	179.7°
O1	C1	N1	H1	0.0°	0.0°
O1	C1	N1	H2	180.0°	179.8°
C1	C2	C3	O2	177.6°	179.8°
C1	C2	C3	C4	177.7°	180.0°
C1	C2	O2	C5	178.0°	179.8°
C2	C1	N1	H1	176.1°	180.0°
C2	C1	N1	H2	3.9°	0.3°
C1	C2	C3	H3	2.3°	0.0°
C2	C3	C4	H3	180.0°	180.0°
C2	C3	C4	C5	0.2°	0.0°
C3	C2	O2	C5	0.0°	0.4°
C2	C3	C4	H4	179.8°	180.0°
C3	C4	C5	H4	180.0°	180.0°
C3	C4	C5	C6	179.9°	180.0°
C3	C4	C5	O2	0.2°	0.3°
C4	C3	C2	O2	0.1°	0.2°
C4	C5	C6	O2	179.9°	179.7°
C4	C5	C6	C7	165.1°	180.0°
C4	C5	O2	C2	0.1°	0.4°
C4	C5	C6	C11	12.5°	0.3°
C5	C4	C3	H3	179.9°	180.0°
C5	C6	C7	C11	177.7°	179.7°
C5	C6	C7	C8	179.1°	180.0°
C5	C6	C11	C10	179.5°	179.7°
C6	C5	O2	C2	180.0°	179.9°
C6	C5	C4	H4	0.1°	0.1°
C5	C6	C7	H5	0.9°	0.0°
C5	C6	C11	H9	0.5°	0.0°
C6	C7	C8	H5	180.0°	180.0°
C6	C7	C8	C9	0.2°	0.0°
C7	C6	C11	C10	1.8°	0.6°
C7	C6	C5	O2	15.0°	0.3°
C6	C7	C8	H6	179.8°	180.0°
C7	C6	C11	H9	178.2°	179.7°
C7	C8	C9	H6	180.0°	179.9°
C7	C8	C9	C10	1.4°	0.0°
C8	C7	C6	C11	1.4°	0.3°
C7	C8	C9	H7	178.6°	180.0°
C8	C9	C10	H7	180.0°	180.0°
C8	C9	C10	C11	1.0°	0.3°
C9	C8	C7	H5	179.8°	179.9°
C8	C9	C10	H8	179.0°	180.0°
C9	C10	C11	H8	180.0°	179.7°
C9	C10	C11	C6	0.6°	0.6°
C10	C9	C8	H6	178.6°	180.0°
C9	C10	C11	H9	179.4°	179.7°
C10	C11	C6	H9	180.0°	179.7°
C11	C10	C9	H7	178.9°	179.7°
O2	C5	C6	C11	167.4°	180.0°
O2	C5	C4	H4	179.8°	179.8°
O2	C2	C3	H3	179.9°	179.8°
C11	C6	C7	H5	178.6°	179.8°
C6	C11	C10	H8	179.4°	179.7°
H3	C3	C4	H4	0.1°	0.0°
H5	C7	C8	H6	0.2°	0.0°
H6	C8	C9	H7	1.4°	0.1°
H7	C9	C10	H8	1.1°	0.0°
H8	C10	C11	H9	0.5°	0.0°

258009

PDB entries from 2026-08-12

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