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A1DNY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.49Å
C2N1sing1.30Å1.38ÅAromatic
N1C3doub1.31Å1.31ÅAromatic
C3C4sing1.47Å1.46Å
C4C5doub1.36Å1.37ÅAromatic
C5C6sing1.38Å1.42ÅAromatic
C6C7doub1.34Å1.35ÅAromatic
C7S1sing1.76Å1.70ÅAromatic
C3S2sing1.76Å1.74ÅAromatic
S2C8sing1.76Å1.71ÅAromatic
C8C9sing1.46Å1.48Å
C9O1doub1.22Å1.22Å
C9O2sing1.35Å1.23Å
C2C8doub1.37Å1.37ÅAromatic
C4S1sing1.76Å1.74ÅAromatic
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C5H4sing1.08Å1.08Å
C6H5sing1.08Å1.08Å
C7H6sing1.08Å1.08Å
O2H7sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1C2N1118.7°122.4°
C1C2C8127.5°122.4°
C2C1H1109.5°109.5°
C2C1H2109.5°109.5°
C2C1H3109.5°109.5°
C2N1C3110.4°117.3°
N1C2C8113.8°115.3°
N1C3C4120.8°125.2°
N1C3S2113.5°109.4°
C3C4C5128.4°125.3°
C4C3S2125.7°125.3°
C3C4S1121.2°125.4°
C4C5C6112.2°114.4°
C5C4S1110.4°109.3°
C4C5H4123.9°122.8°
C5C6C7113.6°115.3°
C6C5H4123.9°122.8°
C5C6H5123.2°122.4°
C6C7S1111.5°109.9°
C7C6H5123.2°122.4°
C6C7H6124.3°125.0°
C7S1C492.3°91.1°
S1C7H6124.2°125.0°
C3S2C889.5°90.0°
S2C8C9118.1°126.0°
S2C8C2109.4°108.0°
C8C9O1117.2°120.0°
C8C9O2117.9°120.0°
C9C8C2132.5°126.0°
O1C9O2125.0°120.0°
C9O2H7109.5°114.1°
H1C1H2109.5°109.4°
H1C1H3109.4°109.5°
H2C1H3109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1C2N1C8179.2°179.7°
C1C2N1C3158.8°180.0°
C1C2C8S2162.5°179.9°
C1C2C8C915.6°0.0°
C2C1H1H2120.0°120.0°
C2C1H1H3120.0°120.0°
C2C1H2H3120.0°120.0°
C2N1C3C4166.7°180.0°
C2N1C3S214.8°0.1°
N1C2C8S216.6°0.4°
N1C2C8C9165.3°179.7°
N1C2C1H10.0°90.1°
N1C2C1H2120.0°150.0°
N1C2C1H3120.0°29.9°
N1C3C4S2178.3°179.9°
N1C3C4C519.1°179.9°
N1C3S2C84.8°0.2°
C3N1C2C820.4°0.3°
N1C3C4S1159.7°0.4°
C3C4C5S1178.9°179.7°
C3C4C5C6177.0°180.0°
C3C4S1C7178.1°179.9°
C4C3S2C8176.8°179.8°
C3C4C5H43.0°0.0°
C4C5C6H4180.0°180.0°
C4C5C6C72.3°0.0°
C5C4S1C70.9°0.3°
C5C4C3S2159.1°0.0°
C4C5C6H5177.7°180.0°
C5C6C7H5180.0°179.9°
C5C6C7S11.6°0.3°
C6C5C4S12.0°0.2°
C5C6C7H6178.4°180.0°
C6C7S1H6180.0°179.7°
C6C7S1C40.4°0.3°
C7C6C5H4177.7°180.0°
S1C7C6H5178.4°179.8°
C3S2C8C9174.9°179.8°
C3S2C8C26.6°0.3°
S2C3C4S122.0°179.7°
S2C8C9C2178.0°179.9°
S2C8C9O1165.8°179.9°
S2C8C9O214.9°0.1°
C8C9O1O2179.2°180.0°
C8C9O2H7179.2°180.0°
O1C9C8C216.1°0.0°
O1C9O2H70.0°0.1°
O2C9C8C2163.2°180.0°
C8C2C1H1179.1°90.2°
C8C2C1H259.0°29.7°
C8C2C1H360.9°149.8°
S1C4C5H4178.1°179.8°
C4S1C7H6179.6°179.9°
H1C1H2H3120.0°120.0°
H4C5C6H52.3°0.0°
H5C6C7H61.6°0.0°

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PDB entries from 2026-08-05

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