English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

A1DN4

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	sing	1.39Å	1.34Å
C1	N2	doub	1.32Å	1.37Å	Aromatic
N2	C2	sing	1.32Å	1.34Å	Aromatic
C2	C3	doub	1.39Å	1.40Å	Aromatic
C3	C4	sing	1.39Å	1.42Å	Aromatic
C4	N3	doub	1.34Å	1.34Å	Aromatic
C4	C5	sing	1.51Å	1.51Å
C5	C6	sing	1.54Å	1.53Å
C6	S1	sing	1.83Å	1.82Å
C1	N3	sing	1.32Å	1.35Å	Aromatic
C3	S1	sing	1.77Å	1.75Å
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
C2	H3	sing	1.08Å	1.08Å
C5	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C6	H6	sing	1.09Å	1.10Å
C6	H7	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C1	N2	116.8°	118.9°
N1	C1	N3	118.1°	118.8°
C1	N1	H1	109.5°	120.0°
C1	N1	H2	109.4°	120.0°
C1	N2	C2	118.4°	120.0°
N2	C1	N3	125.0°	122.3°
N2	C2	C3	119.4°	119.0°
N2	C2	H3	120.3°	120.5°
C2	C3	C4	119.7°	120.1°
C2	C3	S1	128.6°	131.6°
C3	C2	H3	120.3°	120.5°
C3	C4	N3	119.8°	117.0°
C3	C4	C5	114.4°	115.4°
C4	C3	S1	111.7°	108.4°
N3	C4	C5	125.8°	127.6°
C4	N3	C1	117.7°	121.5°
C4	C5	C6	105.3°	110.4°
C4	C5	H4	110.5°	109.3°
C4	C5	H5	110.5°	109.3°
C5	C6	S1	107.4°	101.1°
C6	C5	H4	110.5°	109.3°
C6	C5	H5	110.5°	109.3°
C5	C6	H6	110.0°	111.1°
C5	C6	H7	110.0°	111.1°
C6	S1	C3	91.5°	96.6°
S1	C6	H6	110.0°	111.1°
S1	C6	H7	110.0°	111.1°
H1	N1	H2	109.5°	120.0°
H4	C5	H5	109.5°	109.2°
H6	C6	H7	109.4°	111.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C1	N2	N3	179.4°	179.7°
N1	C1	N2	C2	179.3°	179.8°
N1	C1	N3	C4	179.3°	179.7°
C1	N1	H1	H2	120.0°	179.7°
C1	N2	C2	C3	0.7°	0.0°
N2	C1	N3	C4	1.3°	0.6°
N2	C1	N1	H1	0.0°	0.0°
N2	C1	N1	H2	120.0°	179.7°
C1	N2	C2	H3	179.3°	180.0°
N2	C2	C3	H3	180.0°	179.9°
N2	C2	C3	C4	0.2°	0.3°
C2	N2	C1	N3	1.3°	0.1°
N2	C2	C3	S1	178.2°	179.4°
C2	C3	C4	S1	178.7°	179.8°
C2	C3	C4	N3	0.2°	0.8°
C2	C3	C4	C5	178.8°	179.2°
C2	C3	S1	C6	164.8°	164.8°
C3	C4	N3	C5	178.5°	180.0°
C3	C4	C5	C6	20.4°	20.7°
C4	C3	S1	C6	16.7°	14.9°
C3	C4	N3	C1	0.7°	0.9°
C4	C3	C2	H3	179.8°	179.7°
C3	C4	C5	H4	98.9°	141.0°
C3	C4	C5	H5	139.8°	99.6°
N3	C4	C5	C6	161.0°	159.3°
N3	C4	C3	S1	178.5°	179.0°
N3	C4	C5	H4	79.7°	39.0°
N3	C4	C5	H5	41.7°	80.4°
C4	C5	C6	H4	119.3°	120.3°
C4	C5	C6	H5	119.3°	120.2°
C4	C5	C6	S1	31.1°	28.2°
C5	C4	N3	C1	179.2°	179.1°
C5	C4	C3	S1	0.1°	1.0°
C4	C5	H4	H5	121.9°	119.5°
C4	C5	C6	H6	150.8°	89.8°
C4	C5	C6	H7	88.6°	146.2°
C5	C6	S1	H6	119.7°	118.0°
C5	C6	S1	H7	119.7°	118.0°
C5	C6	S1	C3	28.1°	24.6°
C6	C5	H4	H5	121.9°	119.5°
C5	C6	H6	H7	120.9°	124.1°
S1	C6	C5	H4	88.2°	148.5°
S1	C6	C5	H5	150.5°	92.0°
S1	C6	H6	H7	120.9°	124.1°
N3	C1	N1	H1	179.5°	179.7°
N3	C1	N1	H2	60.5°	0.6°
S1	C3	C2	H3	1.8°	0.6°
C3	S1	C6	H6	147.8°	93.3°
C3	S1	C6	H7	91.6°	142.6°
H4	C5	C6	H6	31.5°	30.5°
H4	C5	C6	H7	152.1°	93.5°
H5	C5	C6	H6	89.8°	150.0°
H5	C5	C6	H7	30.8°	25.9°

258009

PDB entries from 2026-08-12

PDB statistics

PDBj update info

Contact PDBj

numon