Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

A1D8A

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O34P31doub1.48Å1.54Å
P31O30sing1.61Å1.68Å
P31O33sing1.61Å1.53Å
P31O32sing1.61Å1.50Å
O30C29sing1.43Å1.42Å
O36C35sing1.43Å1.44Å
C29C28sing1.53Å1.55Å
C28C35sing1.54Å1.31Å
C28O27sing1.44Å1.57Å
C35C37sing1.55Å1.66Å
N1C2doub1.32Å1.34ÅAromatic
N1C6sing1.33Å1.31ÅAromatic
C2N3sing1.32Å1.32ÅAromatic
O27C26sing1.44Å1.58Å
O38C37sing1.43Å1.45Å
C37C26sing1.55Å1.30Å
N6C6sing1.38Å1.49Å
C6C5doub1.41Å1.41ÅAromatic
N3C4doub1.33Å1.34ÅAromatic
C26O2'sing1.43Å1.46Å
C5C4sing1.40Å1.37ÅAromatic
C5N7sing1.36Å1.33ÅAromatic
C4N9sing1.37Å1.34ÅAromatic
O2'C2'sing1.43Å1.49Å
N7C8doub1.30Å1.32ÅAromatic
N9C1'sing1.47Å1.45Å
N9C8sing1.36Å1.31ÅAromatic
C1'C2'sing1.55Å1.66Å
C1'O4'sing1.44Å1.28Å
C2'C3'sing1.55Å1.25Å
O3'C3'sing1.43Å1.54Å
O4'C4'sing1.44Å1.52Å
C3'C4'sing1.54Å1.58Å
C4'C5'sing1.53Å1.42Å
C5'O5'sing1.43Å1.38Å
O5'PAsing1.61Å1.64Å
O2APAdoub1.48Å1.48Å
PAO3Asing1.61Å1.61Å
PAO1Asing1.61Å1.50Å
O3APBsing1.61Å1.68Å
PBO3Bdoub1.48Å1.52Å
PBO1Bsing1.61Å1.49Å
PBO2Bsing1.61Å1.47Å
C1'H1sing1.09Å1.10Å
C2'H2sing1.09Å1.10Å
C3'H3sing1.09Å1.10Å
C4'H4sing1.09Å1.10Å
C5'H5sing1.09Å1.10Å
C5'H6sing1.09Å1.10Å
C2H7sing1.08Å1.08Å
C26H8sing1.09Å1.10Å
C28H9sing1.09Å1.10Å
C29H10sing1.09Å1.10Å
C29H11sing1.09Å1.10Å
C35H12sing1.09Å1.10Å
C37H13sing1.09Å1.10Å
C8H14sing1.08Å1.08Å
N6H15sing0.97Å1.00Å
N6H16sing0.97Å1.00Å
O1AH17sing0.97Å0.95Å
O1BH18sing0.97Å0.95Å
O2BH19sing0.97Å0.95Å
O3'H20sing0.97Å0.95Å
O32H21sing0.97Å0.95Å
O33H22sing0.97Å0.95Å
O36H23sing0.97Å0.95Å
O38H24sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O34P31O30109.3°109.5°
O34P31O33109.6°109.5°
O34P31O32109.5°109.5°
O30P31O33109.7°109.5°
O30P31O32109.3°109.5°
P31O30C29118.6°123.0°
O33P31O32109.5°109.5°
P31O33H22109.5°114.0°
P31O32H21109.5°114.0°
O30C29C28108.8°109.5°
O30C29H10109.6°109.5°
O30C29H11109.6°109.5°
O36C35C28110.0°110.5°
O36C35C37109.9°110.5°
O36C35H12110.5°110.6°
C35O36H23109.5°114.1°
C29C28C35110.6°109.9°
C29C28O27110.0°109.9°
C29C28H9108.9°110.0°
C28C29H10109.7°109.5°
C28C29H11109.6°109.5°
C35C28O27105.7°107.3°
C28C35C37105.9°104.1°
C35C28H9112.7°109.9°
C28C35H12112.7°110.5°
C28O27C26105.4°106.9°
O27C28H9108.8°109.9°
C35C37O38110.0°110.9°
C35C37C26105.2°102.1°
C37C35H12107.7°110.5°
C35C37H13107.8°110.9°
C2N1C6121.1°121.2°
N1C2N3121.9°122.4°
N1C2H7119.0°118.7°
N1C6N6120.5°120.7°
N1C6C5118.6°118.4°
C2N3C4120.0°120.7°
N3C2H7119.1°118.8°
O27C26C37104.8°103.6°
O27C26O2'110.0°110.6°
O27C26H8108.7°110.6°
O38C37C26110.2°110.9°
O38C37H13110.5°110.8°
C37O38H24109.5°114.1°
C37C26O2'110.1°110.6°
C37C26H8112.9°110.7°
C26C37H13113.0°111.0°
N6C6C5120.9°120.8°
C6N6H15109.5°120.0°
C6N6H16109.4°120.0°
C6C5C4118.7°118.2°
C6C5N7134.7°134.7°
N3C4C5119.7°119.0°
N3C4N9132.9°134.9°
C26O2'C2'109.9°114.0°
O2'C26H8110.2°110.6°
C4C5N7106.6°107.1°
C5C4N9107.4°106.0°
C5N7C8108.4°109.5°
C4N9C1'126.1°126.3°
C4N9C8107.8°107.5°
O2'C2'C1'109.8°110.9°
O2'C2'C3'109.3°110.9°
O2'C2'H2109.5°110.8°
N7C8N9109.8°109.9°
N7C8H14125.1°125.1°
C1'N9C8126.0°126.2°
N9C1'C2'110.5°110.6°
N9C1'O4'109.3°110.7°
N9C1'H1110.3°110.7°
N9C8H14125.1°125.0°
C2'C1'O4'106.0°103.5°
C1'C2'C3'107.2°102.1°
C2'C1'H1107.6°110.6°
C1'C2'H2107.4°110.9°
C1'O4'C4'105.2°107.0°
O4'C1'H1113.1°110.6°
C2'C3'O3'110.0°110.5°
C2'C3'C4'106.8°104.2°
C3'C2'H2113.5°110.9°
C2'C3'H3113.3°110.5°
O3'C3'C4'109.8°110.5°
O3'C3'H3108.7°110.6°
C3'O3'H20109.5°114.0°
O4'C4'C3'105.3°107.3°
O4'C4'C5'109.9°109.9°
O4'C4'H4110.0°110.0°
C3'C4'C5'110.7°109.8°
C4'C3'H3108.2°110.5°
C3'C4'H4109.2°109.9°
C4'C5'O5'108.3°109.4°
C5'C4'H4111.5°109.9°
C4'C5'H5109.7°109.4°
C4'C5'H6109.8°109.5°
C5'O5'PA118.4°123.0°
O5'C5'H5109.8°109.5°
O5'C5'H6109.7°109.5°
O5'PAO2A109.3°109.5°
O5'PAO3A110.1°109.5°
O5'PAO1A109.2°109.4°
O2APAO3A109.4°109.5°
O2APAO1A109.6°109.5°
O3APAO1A109.3°109.5°
PAO3APB123.3°134.0°
PAO1AH17109.5°114.0°
O3APBO3B109.5°109.5°
O3APBO1B109.5°109.5°
O3APBO2B109.5°109.4°
O3BPBO1B109.2°109.5°
O3BPBO2B109.5°109.5°
O1BPBO2B109.5°109.4°
PBO1BH18109.5°114.0°
PBO2BH19109.5°114.0°
H5C5'H6109.5°109.5°
H10C29H11109.5°109.5°
H15N6H16109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O34P31O30O33120.1°120.0°
O34P31O30O32119.9°120.0°
O34P31O33O32120.2°120.0°
O34P31O30C29108.3°55.0°
O34P31O32H210.0°60.0°
O34P31O33H220.0°179.9°
O30P31O33O32119.9°120.0°
P31O30C29C28159.2°180.0°
P31O30C29H1080.9°60.0°
P31O30C29H1139.4°60.0°
O30P31O32H21119.7°180.0°
O30P31O33H22120.0°60.1°
O33P31O30C2911.8°65.0°
O33P31O32H21120.2°60.0°
O32P31O30C29131.8°175.0°
O32P31O33H22120.1°60.0°
O30C29C28H10119.9°120.0°
O30C29C28H11119.9°120.0°
O30C29C28C3517.0°175.0°
O30C29C28O27133.5°67.2°
O30C29C28H9107.4°53.9°
O30C29H10H11120.3°120.0°
O36C35C28C2998.2°119.9°
O36C35C28C37118.7°118.7°
O36C35C28H12123.8°122.7°
O36C35C28O27142.8°120.7°
O36C35C37H12120.4°122.7°
O36C35C37O3838.7°20.4°
O36C35C37C26157.3°97.8°
O36C35C28H924.1°1.2°
O36C35C37H1381.9°143.9°
C29C28C35O27119.0°119.4°
C29C28C35H9122.2°121.1°
C29C28O27H9119.2°121.1°
C29C28C35C37143.1°121.5°
C29C28O27C26126.4°145.9°
C28C29H10H11120.3°120.0°
C29C28C35H1225.6°2.8°
C35C28O27H9121.3°119.5°
C28C35C37H12120.8°118.7°
C35C28O27C266.9°26.5°
C28C35C37O3880.1°139.0°
C28C35C37C2638.5°20.8°
C35C28C29H10136.9°55.0°
C35C28C29H11102.9°65.0°
C28C35C37H13159.4°97.4°
C28C35O36H23180.0°179.9°
O27C28C35C3724.1°2.1°
C28O27C26C3718.3°40.0°
C28O27C26O2'100.0°158.6°
C28O27C26H8139.3°78.6°
O27C28C29H10106.7°172.8°
O27C28C29H1113.6°52.8°
O27C28C35H1293.4°116.6°
C35C37C26O2731.2°37.0°
C35C37O38C26115.5°112.7°
C35C37O38H13118.9°123.6°
C35C37C26H13117.4°118.2°
C35C37C26O2'87.0°155.5°
C35C37C26H8149.3°81.6°
C37C35C28H994.7°117.4°
C37C35O36H2363.7°65.2°
C35C37O38H24180.0°180.0°
N1C2N3H7180.0°179.6°
C2N1C6N6180.0°179.8°
C2N1C6C50.1°0.5°
N1C2N3C40.0°0.3°
C6N1C2N30.1°0.0°
N1C6N6C5179.9°179.3°
N1C6C5C40.1°0.8°
N1C6C5N7180.0°179.9°
C6N1C2H7180.0°179.7°
N1C6N6H150.0°179.2°
N1C6N6H16120.0°0.7°
C2N3C4C50.0°0.0°
C2N3C4N9179.9°179.9°
O27C26C37O3887.2°155.2°
O27C26C37O2'118.3°118.5°
O27C26C37H8118.1°118.6°
O27C26O2'H8119.8°122.9°
O27C26O2'C2'89.6°68.6°
C26O27C28H9114.4°93.0°
O27C26C37H13148.6°81.2°
O38C37C26H13124.1°123.6°
O38C37C26O2'154.5°86.3°
O38C37C26H830.9°36.6°
O38C37C35H12159.1°102.3°
C37C26O2'H8125.2°122.9°
C37C26O2'C2'155.4°177.2°
C26C37C35H1282.3°139.5°
C26C37O38H2464.5°67.3°
N6C6C5C4180.0°179.9°
N6C6C5N70.1°0.6°
C6N6H15H16120.0°179.9°
C6C5C4N30.0°0.5°
C6C5C4N7179.9°179.5°
C6C5C4N9179.9°179.5°
C6C5N7C8179.9°179.4°
C5C6N6H15179.9°0.1°
C5C6N6H1660.1°180.0°
N3C4C5N9179.9°179.9°
N3C4C5N7180.0°180.0°
N3C4N9C1'0.3°0.1°
N3C4N9C8179.9°179.9°
C4N3C2H7180.0°179.9°
C26O2'C2'C1'88.8°150.1°
C26O2'C2'C3'153.8°97.3°
C26O2'C2'H228.9°26.4°
O2'C26C37H1330.3°37.3°
C4C5N7C80.0°0.0°
C5C4N9C1'179.8°180.0°
C5C4N9C80.2°0.0°
N7C5C4N90.1°0.0°
C5N7C8N90.1°0.0°
C5N7C8H14179.9°179.9°
C4N9C8N70.2°0.0°
C4N9C1'C8179.5°180.0°
C4N9C1'C2'149.4°85.0°
C4N9C1'O4'94.3°160.9°
C4N9C1'H130.6°37.9°
C4N9C8H14179.8°179.9°
O2'C2'C1'N992.7°86.3°
O2'C2'C1'C3'118.6°118.2°
O2'C2'C1'H2119.1°123.6°
O2'C2'C1'O4'149.0°155.2°
O2'C2'C3'H2122.6°123.6°
O2'C2'C3'O3'13.8°20.4°
O2'C2'C3'C4'133.0°139.0°
O2'C2'C1'H127.7°36.7°
O2'C2'C3'H3108.0°102.3°
C2'O2'C26H830.2°54.3°
N7C8N9C1'179.8°180.0°
N7C8N9H14180.0°179.9°
N9C1'C2'O4'118.3°118.6°
N9C1'C2'H1120.4°123.0°
N9C1'O4'H1123.2°123.0°
N9C1'C2'C3'148.7°155.6°
N9C1'O4'C4'148.7°158.6°
N9C1'C2'H226.3°37.4°
C1'N9C8H140.2°0.0°
C8N9C1'C2'31.0°95.1°
C8N9C1'O4'85.3°19.1°
C8N9C1'H1149.8°142.0°
C2'C1'O4'H1117.6°118.5°
C1'C2'C3'H2118.4°118.2°
C1'C2'C3'O3'105.1°97.8°
C2'C1'O4'C4'29.6°40.1°
C1'C2'C3'C4'14.0°20.9°
C1'C2'C3'H3133.0°139.6°
O4'C1'C2'C3'30.3°37.0°
C1'O4'C4'C3'22.4°26.5°
C1'O4'C4'C5'141.7°145.9°
O4'C1'C2'H292.0°81.2°
C1'O4'C4'H495.2°93.0°
C2'C3'O3'C4'117.3°114.7°
C2'C3'O3'H3124.6°122.6°
C2'C3'C4'O4'2.3°2.0°
C2'C3'C4'H3122.2°118.7°
C2'C3'C4'C5'121.1°121.4°
C3'C2'C1'H190.9°81.5°
C2'C3'C4'H4115.8°117.5°
C2'C3'O3'H20180.0°179.9°
O3'C3'C4'O4'121.6°120.7°
O3'C3'C4'H3118.5°122.7°
O3'C3'C4'C5'119.7°119.9°
O3'C3'C2'H2136.4°144.0°
O3'C3'C4'H43.4°1.1°
O4'C4'C3'C5'118.8°119.4°
O4'C4'C3'H4118.2°119.6°
O4'C4'C5'H4122.3°121.2°
O4'C4'C5'O5'151.9°67.2°
C4'O4'C1'H188.0°78.4°
O4'C4'C3'H3119.9°116.6°
O4'C4'C5'H532.1°172.8°
O4'C4'C5'H688.3°52.9°
C3'C4'C5'H4121.8°121.0°
C3'C4'C5'O5'36.0°175.0°
C4'C3'C2'H2104.4°97.3°
C3'C4'C5'H583.8°55.0°
C3'C4'C5'H6155.8°65.0°
C4'C3'O3'H2062.7°65.2°
C4'C5'O5'H5119.8°120.0°
C4'C5'O5'H6119.8°120.0°
C4'C5'O5'PA143.8°179.9°
C5'C4'C3'H31.2°2.8°
C4'C5'H5H6120.5°120.0°
C5'O5'PAO2A127.9°54.9°
C5'O5'PAO3A7.8°175.0°
C5'O5'PAO1A112.2°65.0°
O5'C5'C4'H485.8°54.0°
O5'C5'H5H6120.5°120.1°
O5'PAO2AO3A120.6°120.0°
O5'PAO2AO1A119.7°120.0°
O5'PAO3AO1A119.9°120.0°
O5'PAO3APB156.4°165.0°
PAO5'C5'H596.4°60.0°
PAO5'C5'H624.0°60.1°
O5'PAO1AH17119.7°60.0°
O2APAO3AO1A120.0°120.0°
O2APAO3APB83.5°45.0°
O2APAO1AH170.0°180.0°
PAO3APBO3B178.6°40.1°
PAO3APBO1B61.7°80.0°
PAO3APBO2B58.4°160.0°
O3APAO1AH17119.8°60.0°
O1APAO3APB36.5°75.0°
O3APBO3BO1B119.9°120.1°
O3APBO3BO2B120.2°120.0°
O3APBO1BO2B120.1°120.0°
O3APBO1BH18119.9°59.9°
O3APBO2BH19120.2°180.0°
O3BPBO1BO2B120.0°120.0°
O3BPBO1BH180.0°180.0°
O3BPBO2BH190.0°60.0°
O1BPBO2BH19119.7°60.0°
O2BPBO1BH18119.9°60.0°
H1C1'C2'H2146.8°160.3°
H2C2'C3'H314.6°21.4°
H3C3'C4'H4121.9°123.8°
H3C3'O3'H2055.5°57.4°
H4C4'C5'H5154.4°66.0°
H4C4'C5'H634.0°174.0°
H8C26C37H1393.3°160.2°
H9C28C29H1012.5°66.1°
H9C28C29H11132.7°173.9°
H9C28C35H12147.9°123.9°
H12C35C37H1338.6°21.2°
H12C35O36H2355.0°57.4°
H13C37O38H2461.1°56.4°

248335

PDB entries from 2026-01-28

PDB statisticsPDBj update infoContact PDBjnumon