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A1D6Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C09C10sing1.53Å1.52Å
C09O01sing1.45Å1.41Å
O03C08doub1.21Å1.20Å
O01C07sing1.35Å1.34Å
O04C07doub1.22Å1.21Å
C07C05sing1.48Å1.36Å
C08O02sing1.35Å1.34Å
C08C04sing1.48Å1.35Å
C05C04doub1.41Å1.40ÅAromatic
C05C06sing1.39Å1.40ÅAromatic
C04C03sing1.39Å1.40ÅAromatic
C06C01doub1.38Å1.40ÅAromatic
C03C02doub1.38Å1.39ÅAromatic
C01C02sing1.38Å1.40ÅAromatic
C01H1sing1.08Å1.08Å
C02H2sing1.08Å1.08Å
C03H3sing1.08Å1.08Å
C06H4sing1.08Å1.08Å
C09H5sing1.09Å1.10Å
C09H6sing1.09Å1.10Å
C10H7sing1.09Å1.10Å
C10H8sing1.09Å1.10Å
C10H9sing1.09Å1.10Å
O02H10sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C10C09O01108.3°109.4°
C10C09H5109.8°109.4°
C10C09H6109.8°109.5°
C09C10H7109.5°109.5°
C09C10H8109.5°109.5°
C09C10H9109.5°109.5°
C09O01C07111.6°117.0°
O01C09H5109.8°109.5°
O01C09H6109.8°109.5°
O03C08O02119.6°120.0°
O03C08C04122.7°120.0°
O01C07O04118.9°120.0°
O01C07C05122.0°120.0°
O04C07C05119.2°119.9°
C07C05C04122.8°120.3°
C07C05C06118.8°120.2°
O02C08C04117.6°120.0°
C08O02H10109.5°117.0°
C08C04C05122.3°120.2°
C08C04C03117.0°120.2°
C04C05C06118.5°119.6°
C05C04C03120.6°119.6°
C05C06C01120.8°120.0°
C05C06H4119.6°120.0°
C04C03C02120.6°120.0°
C04C03H3119.7°120.0°
C06C01C02120.4°120.4°
C06C01H1119.8°119.8°
C01C06H4119.6°120.0°
C03C02C01119.0°120.4°
C03C02H2120.5°119.8°
C02C03H3119.7°120.0°
C02C01H1119.8°119.8°
C01C02H2120.5°119.8°
H5C09H6109.5°109.5°
H7C10H8109.4°109.5°
H7C10H9109.5°109.4°
H8C10H9109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C10C09O01H5119.8°120.0°
C10C09O01H6119.8°120.0°
C10C09O01C0793.2°180.0°
C10C09H5H6120.6°120.0°
C09C10H7H8120.0°120.0°
C09C10H7H9120.0°120.0°
C09C10H8H9120.0°120.0°
C09O01C07O048.5°0.1°
C09O01C07C05171.9°180.0°
O01C09H5H6120.5°120.1°
O01C09C10H7180.0°60.0°
O01C09C10H860.0°60.0°
O01C09C10H960.0°180.0°
O03C08O02C04177.8°180.0°
O03C08C04C0552.4°54.7°
O03C08C04C03131.3°125.3°
O03C08O02H100.0°0.0°
O01C07O04C05179.6°179.9°
O01C07C05C0446.5°173.6°
O01C07C05C06134.8°6.1°
C07O01C09H5147.0°60.0°
C07O01C09H626.6°60.0°
O04C07C05C04133.0°6.5°
O04C07C05C0645.6°173.8°
C07C05C04C083.7°0.0°
C07C05C04C06178.6°179.7°
C07C05C04C03179.8°180.0°
C07C05C06C01179.4°179.8°
C07C05C06H40.6°0.3°
O02C08C04C05129.9°125.3°
O02C08C04C0346.4°54.7°
C08C04C05C03176.1°180.0°
C08C04C05C06177.7°179.7°
C08C04C03C02177.7°180.0°
C08C04C03H32.3°0.0°
C04C08O02H10177.8°180.0°
C04C05C06C010.7°0.6°
C05C04C03C021.4°0.0°
C05C04C03H3178.6°180.0°
C04C05C06H4179.3°180.0°
C06C05C04C031.6°0.3°
C05C06C01H4180.0°179.5°
C05C06C01C020.3°0.6°
C05C06C01H1179.7°179.7°
C04C03C02H3180.0°180.0°
C04C03C02C010.3°0.1°
C04C03C02H2179.7°180.0°
C06C01C02C030.5°0.3°
C06C01C02H1180.0°179.7°
C06C01C02H2179.5°179.7°
C03C02C01H2180.0°179.9°
C03C02C01H1179.5°179.9°
C01C02C03H3179.7°180.0°
C02C01C06H4179.7°180.0°
H1C01C02H20.5°0.0°
H1C01C06H40.3°0.2°
H2C02C03H30.3°0.0°
H5C09C10H760.2°60.0°
H5C09C10H859.8°180.0°
H5C09C10H9179.8°59.9°
H6C09C10H760.2°180.0°
H6C09C10H8179.8°60.0°
H6C09C10H959.8°60.0°
H7C10H8H9120.0°120.0°

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PDB entries from 2024-10-09

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