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SummaryGeometryRelated PDB entries

A1D5U

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C10C09sing1.53Å1.53Å
C10N11sing1.47Å1.53Å
C09C08sing1.53Å1.53Å
O04C03doub1.21Å1.20Å
N11C06sing1.47Å1.54Å
C08C07sing1.53Å1.55Å
C06C07sing1.53Å1.55Å
C06C05sing1.53Å1.60Å
C03C05sing1.51Å1.57Å
C03O02sing1.34Å1.38Å
C01O02sing1.45Å1.44Å
C13C14doub1.38Å1.41ÅAromatic
C13C12sing1.38Å1.41ÅAromatic
C14C15sing1.38Å1.40ÅAromatic
C05C12sing1.51Å1.55Å
C12C17doub1.38Å1.41ÅAromatic
C15C16doub1.38Å1.40ÅAromatic
C17C16sing1.38Å1.41ÅAromatic
C10H1sing1.09Å1.10Å
C10H2sing1.09Å1.10Å
C13H3sing1.08Å1.08Å
C15H4sing1.08Å1.08Å
C17H5sing1.08Å1.08Å
C01H6sing1.09Å1.10Å
C01H7sing1.09Å1.10Å
C01H8sing1.09Å1.10Å
C05H9sing1.09Å1.10Å
C06H10sing1.09Å1.10Å
C07H11sing1.09Å1.10Å
C07H12sing1.09Å1.10Å
C08H13sing1.09Å1.10Å
C08H14sing1.09Å1.10Å
C09H15sing1.09Å1.10Å
C09H16sing1.09Å1.10Å
C14H17sing1.08Å1.08Å
C16H18sing1.08Å1.08Å
N11H19sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C09C10N11110.0°109.5°
C10C09C08110.6°109.3°
C09C10H1109.3°109.5°
C09C10H2109.3°109.5°
C10C09H15109.2°109.5°
C10C09H16109.2°109.5°
C10N11C06111.6°111.2°
N11C10H1109.3°109.5°
N11C10H2109.3°109.5°
C10N11H19109.0°111.0°
C09C08C07111.2°109.2°
C09C08H13109.1°109.6°
C09C08H14109.0°109.6°
C08C09H15109.2°109.5°
C08C09H16109.2°109.5°
O04C03C05121.5°120.0°
O04C03O02117.8°120.0°
N11C06C07106.4°109.5°
N11C06C05111.0°109.5°
N11C06H10108.9°109.5°
C06N11H19108.9°110.9°
C08C07C06113.2°109.3°
C08C07H11108.5°109.5°
C08C07H12108.5°109.6°
C07C08H13109.0°109.5°
C07C08H14109.1°109.5°
C07C06C05113.4°109.5°
C07C06H10108.8°109.4°
C06C07H11108.5°109.5°
C06C07H12108.5°109.4°
C06C05C03108.6°109.5°
C06C05C12111.5°109.5°
C06C05H9108.7°109.5°
C05C06H10108.2°109.5°
C05C03O02120.7°120.0°
C03C05C12109.9°109.5°
C03C05H9109.0°109.5°
C03O02C01115.3°117.0°
O02C01H6109.5°109.5°
O02C01H7109.5°109.5°
O02C01H8109.5°109.5°
C14C13C12121.7°120.0°
C13C14C15120.6°120.0°
C14C13H3119.1°120.0°
C13C14H17119.7°120.0°
C13C12C05122.1°120.0°
C13C12C17116.7°120.0°
C12C13H3119.2°120.0°
C14C15C16118.8°120.0°
C14C15H4120.6°120.0°
C15C14H17119.7°120.0°
C05C12C17121.2°120.0°
C12C05H9109.2°109.5°
C12C17C16121.9°120.0°
C12C17H5119.0°120.0°
C15C16C17120.3°120.0°
C16C15H4120.6°120.0°
C15C16H18119.8°120.1°
C16C17H5119.0°120.1°
C17C16H18119.9°119.9°
H1C10H2109.5°109.4°
H6C01H7109.5°109.5°
H6C01H8109.5°109.4°
H7C01H8109.5°109.4°
H11C07H12109.5°109.5°
H13C08H14109.5°109.5°
H15C09H16109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C09C10N11H1120.1°120.0°
C09C10N11H2120.1°120.0°
C10C09C08H15120.2°120.0°
C10C09C08H16120.2°119.9°
C09C10N11C0662.1°61.8°
C10C09C08C0753.4°57.7°
C09C10H1H2119.7°120.0°
C10C09C08H13173.6°62.2°
C10C09C08H1466.9°177.6°
C10C09H15H16119.5°120.1°
C09C10N11H19177.6°174.2°
N11C10C09C0857.0°59.2°
C10N11C06H19120.3°124.1°
C10N11C06C0759.9°61.7°
C10N11C06C05176.2°178.2°
N11C10H1H2119.8°120.0°
C10N11C06H1057.1°58.2°
N11C10C09H1563.1°60.7°
N11C10C09H16177.2°179.1°
C09C08C07H13120.3°119.9°
C09C08C07H14120.3°120.0°
C09C08C07C0654.8°57.6°
C08C09C10H163.0°60.8°
C08C09C10H2177.1°179.2°
C09C08C07H1165.8°177.6°
C09C08C07H12175.3°62.3°
C09C08H13H14119.2°120.2°
C08C09H15H16119.5°120.1°
O04C03C05C0620.6°120.0°
O04C03C05O02179.8°180.0°
O04C03O02C013.9°0.0°
O04C03C05C12101.5°0.1°
O04C03C05H9138.8°120.0°
N11C06C07C0856.4°59.1°
N11C06C07C05122.4°120.1°
N11C06C07H10117.2°120.0°
N11C06C05H10119.5°120.0°
N11C06C05C0343.0°65.8°
N11C06C05C12164.2°174.3°
C06N11C10H158.0°58.3°
C06N11C10H2177.8°178.2°
N11C06C05H975.4°54.2°
N11C06C07H1164.2°179.1°
N11C06C07H12176.9°60.9°
C08C07C06H11120.6°120.0°
C08C07C06H12120.5°120.0°
C08C07C06C05178.8°179.2°
C08C07C06H1060.8°60.9°
C08C07H11H12118.3°120.1°
C07C08H13H14119.2°120.1°
C07C08C09H1566.8°62.3°
C07C08C09H16173.5°177.6°
C07C06C05H10120.8°119.9°
C07C06C05C03162.8°174.2°
C07C06C05C1276.0°54.2°
C07C06C05H944.4°65.8°
C06C07H11H12118.3°120.0°
C06C07C08H13175.1°62.3°
C06C07C08H1465.5°177.6°
C07C06N11H19179.7°174.2°
C06C05C03C12122.1°120.0°
C06C05C03H9118.2°120.0°
C06C05C03O02159.2°60.0°
C06C05C12C1340.2°125.7°
C06C05C12H9120.1°120.0°
C06C05C12C17140.1°54.3°
C05C06C07H1158.2°60.8°
C05C06C07H1260.7°59.2°
C05C06N11H1955.9°54.1°
C05C03O02C01176.2°180.0°
C03C05C12C1380.2°114.4°
C03C05C12H9119.5°120.0°
C03C05C12C1799.5°65.7°
C03C05C06H1076.5°54.2°
O02C03C05C1278.6°180.0°
C03O02C01H6180.0°60.0°
C03O02C01H760.0°180.0°
C03O02C01H860.0°60.0°
O02C03C05H941.0°60.0°
O02C01H6H7120.0°120.1°
O02C01H6H8120.0°120.0°
O02C01H7H8120.0°120.0°
C14C13C12H3180.0°179.7°
C13C14C15H17180.0°179.9°
C14C13C12C05179.8°180.0°
C14C13C12C170.1°0.0°
C13C14C15C160.0°0.1°
C13C14C15H4180.0°180.0°
C12C13C14C150.1°0.0°
C13C12C05C17179.7°180.0°
C13C12C17C160.0°0.0°
C13C12C17H5180.0°180.0°
C13C12C05H9160.3°5.7°
C12C13C14H17179.9°180.0°
C14C15C16H4180.0°179.9°
C14C15C16C170.0°0.1°
C15C14C13H3179.9°179.7°
C14C15C16H18179.9°180.0°
C05C12C17C16179.8°180.0°
C05C12C13H30.2°0.3°
C05C12C17H50.3°0.0°
C12C05C06H1044.7°65.7°
C12C17C16C150.0°0.0°
C12C17C16H5180.0°180.0°
C17C12C13H3179.9°179.7°
C17C12C05H920.0°174.3°
C12C17C16H18180.0°180.0°
C15C16C17H18180.0°179.9°
C15C16C17H5180.0°179.9°
C16C15C14H17180.0°180.0°
C17C16C15H4180.0°180.0°
H1C10C09H15176.8°179.3°
H1C10C09H1657.2°59.1°
H1C10N11H1962.3°65.8°
H2C10C09H1557.0°59.3°
H2C10C09H1662.7°60.9°
H2C10N11H1957.6°54.2°
H3C13C14H170.1°0.2°
H4C15C14H170.0°0.1°
H4C15C16H180.1°0.1°
H5C17C16H180.1°0.0°
H6C01H7H8120.0°119.9°
H9C05C06H10165.1°174.2°
H10C06C07H11178.7°59.1°
H10C06C07H1259.8°179.2°
H10C06N11H1963.2°65.8°
H11C07C08H1354.5°57.7°
H11C07C08H14174.0°62.4°
H12C07C08H1364.4°177.8°
H12C07C08H1455.1°57.7°
H13C08C09H1553.4°177.8°
H13C08C09H1666.2°57.7°
H14C08C09H15172.9°57.6°
H14C08C09H1653.3°62.5°

223790

PDB entries from 2024-08-14

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