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SummaryGeometryRelated PDB entries

A1D5C

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.51Å1.53Å
O03C02doub1.21Å1.24Å
C02N04sing1.35Å1.47Å
C22C21doub1.36Å1.35ÅAromatic
C22C23sing1.39Å1.45ÅAromatic
N24C23sing1.38Å1.30ÅAromatic
N24C25sing1.36Å1.34ÅAromatic
C21C20sing1.41Å1.42ÅAromatic
C23C27doub1.41Å1.32ÅAromatic
N04C08sing1.47Å1.33Å
N04C05sing1.47Å1.61Å
C08C07sing1.54Å1.67Å
C25N26doub1.30Å1.30ÅAromatic
C05C06sing1.55Å1.59Å
C20C28doub1.40Å1.38ÅAromatic
C20C19sing1.47Å1.53Å
C27N26sing1.36Å1.35ÅAromatic
C27C28sing1.39Å1.34ÅAromatic
C19C18doub1.36Å1.39Å
C07C06sing1.55Å1.32Å
C07O09sing1.43Å1.36Å
O09C10sing1.36Å1.39Å
C18C16sing1.47Å1.48Å
C18C29sing1.48Å1.48Å
O17C16doub1.22Å1.22Å
C10C29doub1.40Å1.39ÅAromatic
C10C11sing1.39Å1.40ÅAromatic
C16N15sing1.34Å1.47Å
C29C14sing1.40Å1.44ÅAromatic
C11C12doub1.38Å1.46ÅAromatic
C14N15sing1.39Å1.49Å
C14C13doub1.39Å1.41ÅAromatic
C12C13sing1.38Å1.42ÅAromatic
C28H1sing1.08Å1.08Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C05H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C06H7sing1.09Å1.10Å
C06H8sing1.09Å1.10Å
C07H9sing1.09Å1.10Å
C08H10sing1.09Å1.10Å
C08H11sing1.09Å1.10Å
C11H12sing1.08Å1.08Å
C12H13sing1.08Å1.08Å
C13H14sing1.08Å1.08Å
N15H15sing0.97Å1.00Å
C19H16sing1.08Å1.08Å
C21H17sing1.08Å1.08Å
C22H18sing1.08Å1.08Å
N24H19sing0.97Å1.00Å
C25H20sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C02O03120.4°120.0°
C01C02N04118.3°120.0°
C02C01H2109.5°109.5°
C02C01H3109.5°109.5°
C02C01H4109.5°109.5°
O03C02N04121.3°120.0°
C02N04C08125.9°125.7°
C02N04C05128.8°125.6°
C21C22C23119.9°120.2°
C22C21C20117.3°120.4°
C22C21H17121.4°119.8°
C21C22H18120.0°119.9°
C22C23N24134.3°133.9°
C22C23C27123.1°120.2°
C23C22H18120.0°119.9°
C23N24C25110.1°107.4°
N24C23C27102.6°105.9°
C23N24H19124.9°126.2°
N24C25N26111.6°110.1°
C25N24H19125.0°126.3°
N24C25H20124.2°124.9°
C21C20C28118.5°120.1°
C21C20C19125.2°119.9°
C20C21H17121.4°119.9°
C23C27N26115.0°107.0°
C23C27C28115.5°119.6°
C08N04C05105.3°108.7°
N04C08C07105.7°107.3°
N04C08H10110.4°109.9°
N04C08H11110.4°109.9°
N04C05C06106.3°104.8°
N04C05H5110.3°110.4°
N04C05H6110.3°110.4°
C08C07C06107.1°102.8°
C08C07O09100.8°110.6°
C08C07H9109.0°111.1°
C07C08H10110.4°110.0°
C07C08H11110.4°109.7°
C25N26C27100.6°109.6°
N26C25H20124.2°125.0°
C05C06C07102.3°101.6°
C06C05H5110.3°110.3°
C06C05H6110.3°110.3°
C05C06H7111.2°111.0°
C05C06H8111.3°111.0°
C28C20C19116.3°119.9°
C20C28C27125.6°119.4°
C20C28H1117.2°120.3°
C20C19C18119.4°120.0°
C20C19H16120.3°120.0°
N26C27C28129.4°133.5°
C27C28H1117.2°120.3°
C19C18C16130.3°127.5°
C19C18C29125.5°127.5°
C18C19H16120.3°120.0°
C06C07O09111.0°110.7°
C07C06H7111.2°111.0°
C07C06H8111.2°111.0°
C06C07H9114.3°110.7°
C07O09C10113.1°117.0°
O09C07H9113.6°110.7°
O09C10C29112.1°120.2°
O09C10C11128.0°120.2°
C16C18C29104.2°105.0°
C18C16O17126.1°126.1°
C18C16N15110.7°107.9°
C18C29C10128.2°133.2°
C18C29C14111.3°106.5°
O17C16N15123.2°126.1°
C29C10C11119.8°119.6°
C10C29C14120.4°120.3°
C10C11C12120.3°120.0°
C10C11H12119.8°120.0°
C16N15C14106.2°111.4°
C16N15H15126.9°124.2°
C29C14N15107.7°109.2°
C29C14C13121.3°119.1°
C11C12C13119.9°120.7°
C12C11H12119.8°120.0°
C11C12H13120.1°119.6°
N15C14C13131.0°131.6°
C14N15H15126.9°124.3°
C14C13C12118.3°120.2°
C14C13H14120.9°119.9°
C13C12H13120.1°119.7°
C12C13H14120.9°119.8°
H2C01H3109.5°109.5°
H2C01H4109.4°109.4°
H3C01H4109.5°109.4°
H5C05H6109.5°110.4°
H7C06H8109.5°110.9°
H10C08H11109.5°110.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C02O03N04179.8°180.0°
C01C02N04C080.7°179.9°
C01C02N04C05179.9°0.3°
C02C01H2H3120.0°120.0°
C02C01H2H4120.0°120.1°
C02C01H3H4120.0°120.0°
O03C02N04C08179.5°0.1°
O03C02N04C050.0°179.7°
O03C02C01H20.0°90.0°
O03C02C01H3120.0°30.0°
O03C02C01H4120.0°150.0°
C02N04C08C05179.6°179.7°
C02N04C08C07160.4°179.0°
C02N04C05C06179.1°155.8°
N04C02C01H2179.8°90.0°
N04C02C01H359.8°150.0°
N04C02C01H460.2°30.0°
C02N04C05H559.6°85.4°
C02N04C05H661.4°37.0°
C02N04C08H1080.2°59.4°
C02N04C08H1141.0°61.7°
C21C22C23H18180.0°179.7°
C21C22C23N24178.8°180.0°
C22C21C20H17180.0°179.9°
C21C22C23C271.5°0.6°
C22C21C20C282.5°0.0°
C22C21C20C19178.3°180.0°
C22C23N24C27179.7°179.4°
C22C23N24C25179.9°180.0°
C23C22C21C202.5°0.4°
C22C23C27N26179.6°179.6°
C22C23C27C280.5°0.6°
C23C22C21H17177.5°179.7°
C22C23N24H190.0°0.0°
C23N24C25H19180.0°180.0°
C23N24C25N260.6°0.8°
N24C23C27N260.2°0.1°
N24C23C27C28179.8°179.9°
N24C23C22H181.2°0.3°
C23N24C25H20179.4°180.0°
C25N24C23C270.2°0.6°
N24C25N26H20180.0°179.2°
N24C25N26C270.6°0.8°
C21C20C28C19179.3°180.0°
C21C20C28C271.7°0.0°
C21C20C19C18149.4°142.0°
C21C20C28H1178.3°180.0°
C21C20C19H1630.6°37.9°
C20C21C22H18177.5°180.0°
C23C27N26C250.5°0.4°
C23C27C28C200.6°0.3°
C23C27N26C28179.9°179.7°
C23C27C28H1179.4°179.7°
C27C23C22H18178.5°179.7°
C27C23N24H19179.7°179.5°
N04C08C07H10119.4°119.5°
N04C08C07H11119.4°119.3°
C08N04C05C061.4°23.9°
N04C08C07C0638.2°22.6°
N04C08C07O09154.3°140.8°
C08N04C05H5120.9°94.9°
C08N04C05H6118.1°142.7°
N04C08C07H985.9°95.9°
N04C08H10H11121.8°121.1°
C05N04C08C0720.0°0.6°
N04C05C06H5119.5°118.8°
N04C05C06H6119.5°118.9°
N04C05C06C0722.7°37.0°
N04C05H5H6121.5°122.4°
N04C05C06H7141.6°155.1°
N04C05C06H896.1°81.1°
C05N04C08H1099.4°120.2°
C05N04C08H11139.4°118.6°
C08C07C06C0534.1°35.7°
C08C07C06O09109.1°118.1°
C08C07C06H9120.8°118.8°
C08C07O09H9116.4°123.6°
C08C07O09C10166.4°93.6°
C08C07C06H7152.9°153.8°
C08C07C06H884.8°82.4°
C07C08H10H11121.7°121.0°
C25N26C27C28179.4°179.3°
N26C25N24H19179.4°179.2°
C05C06C07H7118.8°118.1°
C05C06C07H8118.9°118.1°
C05C06C07O09143.2°153.9°
C06C05H5H6121.5°122.3°
C05C06H7H8123.4°123.9°
C05C06C07H986.8°83.0°
C20C28C27N26179.5°180.0°
C20C28C27H1180.0°180.0°
C28C20C19C1831.4°38.0°
C28C20C19H16148.6°142.0°
C28C20C21H17177.5°180.0°
C19C20C28C27179.1°180.0°
C20C19C18H16180.0°180.0°
C20C19C18C1612.5°6.7°
C20C19C18C29166.6°172.7°
C19C20C28H10.9°0.0°
C19C20C21H171.7°0.0°
N26C27C28H10.5°0.0°
C27N26C25H20179.4°180.0°
C19C18C16C29179.3°179.6°
C19C18C16O171.2°0.2°
C19C18C29C100.0°0.4°
C19C18C16N15179.7°180.0°
C19C18C29C14179.4°180.0°
C06C07O09H9130.4°123.1°
C06C07O09C1080.5°153.1°
C07C06C05H596.7°81.8°
C07C06C05H6142.2°155.9°
C07C06H7H8123.3°123.9°
C06C07C08H1081.2°96.9°
C06C07C08H11157.6°141.9°
C07O09C10C29136.6°174.6°
C07O09C10C1146.9°5.3°
O09C07C06H798.0°88.1°
O09C07C06H824.3°35.8°
O09C07C08H1034.9°21.3°
O09C07C08H1186.3°99.9°
O09C10C29C182.3°0.4°
O09C10C29C11176.8°179.9°
O09C10C29C14177.0°180.0°
O09C10C11C12177.0°180.0°
C10O09C07H949.9°29.9°
O09C10C11H122.9°0.1°
C18C16O17N15179.1°179.8°
C16C18C29C10179.3°180.0°
C16C18C29C140.1°0.4°
C18C16N15C140.6°0.2°
C18C16N15H15179.3°179.7°
C16C18C19H16167.5°173.2°
C29C18C16O17179.6°179.8°
C18C29C10C14179.3°179.6°
C18C29C10C11179.1°179.7°
C29C18C16N150.4°0.4°
C18C29C14N150.3°0.3°
C18C29C14C13179.9°179.7°
C29C18C19H1613.4°7.3°
O17C16N15C14179.8°180.0°
O17C16N15H150.1°0.1°
C29C10C11C120.8°0.1°
C10C29C14N15179.7°180.0°
C10C29C14C130.5°0.0°
C29C10C11H12179.1°180.0°
C11C10C29C140.2°0.1°
C10C11C12H12180.0°180.0°
C10C11C12C130.8°0.0°
C10C11C12H13179.2°180.0°
C16N15C14C290.6°0.0°
C16N15C14H15180.0°179.9°
C16N15C14C13179.7°180.0°
C29C14N15C13179.7°180.0°
C29C14C13C120.5°0.0°
C29C14C13H14179.5°179.9°
C29C14N15H15179.4°180.0°
C11C12C13C140.1°0.0°
C11C12C13H13180.0°180.0°
C11C12C13H14179.9°180.0°
N15C14C13C12179.8°180.0°
N15C14C13H140.2°0.0°
C14C13C12H14180.0°180.0°
C14C13C12H13179.9°180.0°
C13C14N15H150.3°0.0°
C13C12C11H12179.2°180.0°
H2C01H3H4120.0°119.9°
H5C05C06H722.1°36.2°
H5C05C06H8144.4°160.1°
H6C05C06H798.9°86.1°
H6C05C06H823.4°37.8°
H7C06C07H932.1°35.0°
H8C06C07H9154.4°158.9°
H9C07C08H10154.7°144.5°
H9C07C08H1133.5°23.4°
H12C11C12H130.8°0.0°
H13C12C13H140.1°0.1°
H17C21C22H182.5°0.0°
H19N24C25H200.6°0.0°

226262

PDB entries from 2024-10-16

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