A1CYM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C15	N3	sing	1.48Å	1.48Å
C15	C14	sing	1.54Å	1.49Å
N3	C12	sing	1.49Å	1.47Å
C14	C13	sing	1.54Å	1.52Å
C12	C13	sing	1.54Å	1.52Å
C12	C11	sing	1.51Å	1.51Å
O1	C11	doub	1.21Å	1.23Å
C11	N2	sing	1.35Å	1.37Å
N2	S1	sing	1.66Å	1.65Å
C17	N5	doub	1.32Å	1.34Å	Aromatic
C17	N4	sing	1.31Å	1.31Å	Aromatic
N5	C1	sing	1.33Å	1.35Å	Aromatic
N4	C3	doub	1.35Å	1.36Å	Aromatic
C1	N1	sing	1.39Å	1.33Å
C1	C2	doub	1.41Å	1.41Å	Aromatic
C3	C2	sing	1.40Å	1.41Å	Aromatic
C3	C4	sing	1.40Å	1.42Å	Aromatic
C2	S2	sing	1.76Å	1.73Å	Aromatic
C4	C5	doub	1.34Å	1.40Å	Aromatic
C7	C8	doub	1.38Å	1.38Å	Aromatic
C7	C6	sing	1.40Å	1.39Å	Aromatic
O3	S1	doub	1.42Å	1.43Å
C5	S2	sing	1.76Å	1.74Å	Aromatic
C5	C6	sing	1.48Å	1.47Å
C8	C9	sing	1.38Å	1.38Å	Aromatic
C6	C16	doub	1.40Å	1.39Å	Aromatic
C9	C10	doub	1.38Å	1.39Å	Aromatic
C16	C10	sing	1.38Å	1.38Å	Aromatic
C10	S1	sing	1.76Å	1.76Å
S1	O2	doub	1.42Å	1.43Å
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
N3	H3	sing	1.01Å	1.00Å
C4	H5	sing	1.08Å	1.08Å
C7	H6	sing	1.08Å	1.08Å
C8	H7	sing	1.08Å	1.08Å
C13	H8	sing	1.09Å	1.10Å
C13	H9	sing	1.09Å	1.10Å
C15	H10	sing	1.09Å	1.10Å
C15	H11	sing	1.09Å	1.10Å
C17	H12	sing	1.08Å	1.08Å
C12	H13	sing	1.09Å	1.10Å
C14	H14	sing	1.09Å	1.10Å
C14	H15	sing	1.09Å	1.10Å
C16	H16	sing	1.08Å	1.08Å
C9	H17	sing	1.08Å	1.08Å
N2	H18	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N3	C15	C14	102.0°	104.6°
C15	N3	C12	106.8°	104.2°
C15	N3	H3	110.1°	111.0°
N3	C15	H10	111.3°	110.4°
N3	C15	H11	111.3°	110.4°
C15	C14	C13	99.2°	105.1°
C14	C15	H10	111.3°	110.4°
C14	C15	H11	111.3°	110.4°
C15	C14	H14	112.0°	110.3°
C15	C14	H15	112.0°	110.4°
N3	C12	C13	104.7°	104.6°
N3	C12	C11	111.3°	110.4°
C12	N3	H3	110.1°	111.0°
N3	C12	H13	110.3°	110.4°
C14	C13	C12	102.3°	105.0°
C14	C13	H8	111.2°	110.4°
C14	C13	H9	111.2°	110.4°
C13	C14	H14	112.0°	110.3°
C13	C14	H15	112.0°	110.4°
C13	C12	C11	110.8°	110.4°
C12	C13	H8	111.2°	110.3°
C12	C13	H9	111.2°	110.3°
C13	C12	H13	109.7°	110.5°
C12	C11	O1	120.0°	120.0°
C12	C11	N2	116.7°	120.0°
C11	C12	H13	109.8°	110.5°
O1	C11	N2	123.3°	119.9°
C11	N2	S1	124.8°	120.0°
C11	N2	H18	117.6°	120.0°
N2	S1	O3	108.3°	106.4°
N2	S1	C10	105.4°	107.2°
N2	S1	O2	106.7°	106.4°
S1	N2	H18	117.6°	120.0°
N5	C17	N4	128.6°	122.6°
C17	N5	C1	118.0°	120.8°
N5	C17	H12	115.7°	118.7°
C17	N4	C3	115.0°	121.1°
N4	C17	H12	115.7°	118.7°
N5	C1	N1	118.5°	120.5°
N5	C1	C2	118.1°	118.9°
N4	C3	C2	121.3°	117.8°
N4	C3	C4	124.9°	129.6°
N1	C1	C2	123.4°	120.5°
C1	N1	H1	109.5°	120.0°
C1	N1	H2	109.5°	120.0°
C1	C2	C3	119.0°	118.8°
C1	C2	S2	130.4°	131.5°
C2	C3	C4	113.7°	112.6°
C3	C2	S2	110.7°	109.7°
C3	C4	C5	111.7°	115.6°
C3	C4	H5	124.2°	122.2°
C2	S2	C5	92.1°	91.5°
C4	C5	S2	111.8°	110.6°
C4	C5	C6	128.0°	124.7°
C5	C4	H5	124.1°	122.2°
C8	C7	C6	120.7°	119.9°
C7	C8	C9	120.5°	120.1°
C8	C7	H6	119.7°	120.1°
C7	C8	H7	119.7°	119.9°
C7	C6	C5	120.4°	120.1°
C7	C6	C16	118.6°	119.7°
C6	C7	H6	119.7°	120.1°
O3	S1	C10	108.2°	106.4°
O3	S1	O2	119.6°	123.1°
S2	C5	C6	120.2°	124.7°
C5	C6	C16	121.0°	120.1°
C8	C9	C10	119.4°	120.3°
C9	C8	H7	119.8°	119.9°
C8	C9	H17	120.3°	119.9°
C6	C16	C10	120.4°	119.9°
C6	C16	H16	119.8°	120.1°
C9	C10	C16	120.5°	120.1°
C9	C10	S1	119.8°	119.9°
C10	C9	H17	120.3°	119.8°
C16	C10	S1	119.7°	119.9°
C10	C16	H16	119.8°	120.1°
C10	S1	O2	107.9°	106.4°
H1	N1	H2	109.4°	120.0°
H8	C13	H9	109.5°	110.4°
H10	C15	H11	109.4°	110.4°
H14	C14	H15	109.5°	110.3°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N3	C15	C14	H10	118.8°	118.8°
N3	C15	C14	H11	118.8°	118.8°
C15	N3	C12	H3	119.6°	119.6°
N3	C15	C14	C13	48.3°	23.8°
C15	N3	C12	C13	4.5°	39.5°
C15	N3	C12	C11	124.2°	158.3°
N3	C15	H10	H11	123.5°	122.4°
C15	N3	C12	H13	113.6°	79.3°
N3	C15	C14	H14	166.6°	95.1°
N3	C15	C14	H15	70.0°	142.8°
C14	C15	N3	C12	33.4°	39.5°
C15	C14	C13	H14	118.3°	118.9°
C15	C14	C13	H15	118.3°	119.0°
C15	C14	C13	C12	45.4°	0.1°
C14	C15	N3	H3	86.2°	80.1°
C15	C14	C13	H8	73.4°	118.8°
C15	C14	C13	H9	164.3°	118.9°
C14	C15	H10	H11	123.5°	122.4°
C15	C14	H14	H15	124.8°	122.2°
N3	C12	C13	C14	25.7°	23.9°
N3	C12	C13	C11	120.1°	118.8°
N3	C12	C13	H13	118.4°	118.8°
N3	C12	C11	H13	122.5°	122.4°
N3	C12	C11	O1	0.4°	18.5°
N3	C12	C11	N2	179.8°	161.4°
N3	C12	C13	H8	93.2°	95.0°
N3	C12	C13	H9	144.5°	142.8°
C12	N3	C15	H10	85.4°	79.3°
C12	N3	C15	H11	152.2°	158.3°
C14	C13	C12	H8	118.8°	118.9°
C14	C13	C12	H9	118.8°	118.9°
C14	C13	C12	C11	94.5°	142.7°
C14	C13	H8	H9	123.3°	122.3°
C13	C14	C15	H10	70.5°	95.0°
C13	C14	C15	H11	167.1°	142.6°
C14	C13	C12	H13	144.1°	94.9°
C13	C14	H14	H15	124.8°	122.2°
C13	C12	C11	H13	121.4°	122.4°
C13	C12	C11	O1	115.7°	96.6°
C13	C12	C11	N2	63.7°	83.4°
C13	C12	N3	H3	115.1°	80.1°
C12	C13	H8	H9	123.3°	122.1°
C12	C13	C14	H14	163.7°	118.9°
C12	C13	C14	H15	72.9°	118.9°
C12	C11	O1	N2	179.4°	179.9°
C12	C11	N2	S1	178.5°	180.0°
C11	C12	N3	H3	4.7°	38.7°
C11	C12	C13	H8	146.7°	23.7°
C11	C12	C13	H9	24.3°	98.4°
C12	C11	N2	H18	1.5°	0.1°
O1	C11	N2	S1	0.8°	0.1°
O1	C11	C12	H13	122.9°	140.9°
O1	C11	N2	H18	179.1°	180.0°
C11	N2	S1	H18	180.0°	179.9°
C11	N2	S1	O3	36.5°	178.6°
C11	N2	S1	C10	79.1°	65.0°
C11	N2	S1	O2	166.5°	48.5°
N2	C11	C12	H13	57.7°	39.0°
N2	S1	O3	C10	113.7°	114.1°
N2	S1	O3	O2	122.3°	122.9°
N2	S1	C10	C9	40.7°	90.0°
N2	S1	C10	C16	139.2°	90.0°
N2	S1	C10	O2	113.6°	113.6°
N5	C17	N4	H12	180.0°	179.9°
N5	C17	N4	C3	0.4°	0.0°
C17	N5	C1	N1	179.8°	179.6°
C17	N5	C1	C2	0.5°	0.6°
N4	C17	N5	C1	0.1°	0.3°
C17	N4	C3	C2	0.4°	0.0°
C17	N4	C3	C4	179.5°	179.6°
N5	C1	N1	C2	179.2°	179.8°
N5	C1	C2	C3	0.5°	0.6°
N5	C1	C2	S2	179.6°	179.8°
N5	C1	N1	H1	0.0°	179.8°
N5	C1	N1	H2	120.0°	0.1°
C1	N5	C17	H12	179.9°	179.8°
N4	C3	C2	C1	0.0°	0.3°
N4	C3	C2	C4	179.9°	179.7°
N4	C3	C2	S2	180.0°	180.0°
N4	C3	C4	C5	179.8°	179.7°
N4	C3	C4	H5	0.1°	0.1°
C3	N4	C17	H12	179.6°	179.9°
N1	C1	C2	C3	179.7°	179.6°
N1	C1	C2	S2	0.4°	0.0°
C1	N1	H1	H2	120.0°	179.7°
C1	C2	C3	S2	179.9°	179.7°
C1	C2	C3	C4	180.0°	180.0°
C1	C2	S2	C5	179.9°	180.0°
C2	C1	N1	H1	179.2°	0.0°
C2	C1	N1	H2	59.2°	179.7°
C2	C3	C4	C5	0.2°	0.1°
C3	C2	S2	C5	0.0°	0.4°
C2	C3	C4	H5	179.8°	179.7°
C4	C3	C2	S2	0.1°	0.3°
C3	C4	C5	H5	180.0°	179.8°
C3	C4	C5	S2	0.3°	0.2°
C3	C4	C5	C6	178.6°	179.8°
C2	S2	C5	C4	0.2°	0.3°
C2	S2	C5	C6	178.6°	179.6°
C4	C5	C6	C7	2.6°	0.3°
C4	C5	S2	C6	178.5°	180.0°
C4	C5	C6	C16	178.5°	179.9°
C8	C7	C6	H6	180.0°	180.0°
C8	C7	C6	C5	179.4°	180.0°
C7	C8	C9	H7	180.0°	180.0°
C8	C7	C6	C16	0.5°	0.3°
C7	C8	C9	C10	0.1°	0.3°
C7	C8	C9	H17	179.9°	180.0°
C7	C6	C5	S2	175.6°	179.7°
C7	C6	C5	C16	178.9°	179.7°
C6	C7	C8	C9	0.2°	0.0°
C7	C6	C16	C10	0.7°	0.3°
C6	C7	C8	H7	179.8°	180.0°
C7	C6	C16	H16	179.3°	179.7°
O3	S1	C10	C9	156.4°	156.5°
O3	S1	C10	C16	23.5°	23.5°
O3	S1	C10	O2	130.7°	132.9°
O3	S1	N2	H18	143.4°	1.5°
S2	C5	C6	C16	3.3°	0.0°
S2	C5	C4	H5	179.8°	180.0°
C5	C6	C16	C10	179.6°	180.0°
C6	C5	C4	H5	1.5°	0.0°
C5	C6	C7	H6	0.6°	0.0°
C5	C6	C16	H16	0.4°	0.1°
C8	C9	C10	H17	180.0°	179.7°
C8	C9	C10	C16	0.2°	0.3°
C8	C9	C10	S1	179.8°	179.7°
C9	C8	C7	H6	179.8°	180.0°
C6	C16	C10	C9	0.6°	0.0°
C6	C16	C10	H16	180.0°	179.9°
C6	C16	C10	S1	179.5°	180.0°
C16	C6	C7	H6	179.5°	179.7°
C9	C10	C16	S1	179.9°	180.0°
C9	C10	S1	O2	72.9°	23.6°
C10	C9	C8	H7	179.9°	179.7°
C9	C10	C16	H16	179.4°	180.0°
C16	C10	S1	O2	107.2°	156.5°
C16	C10	C9	H17	179.7°	180.0°
S1	C10	C16	H16	0.5°	0.0°
S1	C10	C9	H17	0.2°	0.0°
C10	S1	N2	H18	101.0°	115.0°
O2	S1	N2	H18	13.5°	131.4°
H3	N3	C15	H10	155.0°	161.1°
H3	N3	C15	H11	32.6°	38.7°
H3	N3	C12	H13	126.9°	161.1°
H6	C7	C8	H7	0.2°	0.0°
H7	C8	C9	H17	0.1°	0.1°
H8	C13	C12	H13	25.2°	146.2°
H8	C13	C14	H14	44.9°	0.0°
H8	C13	C14	H15	168.3°	122.2°
H9	C13	C12	H13	97.1°	24.0°
H9	C13	C14	H14	77.4°	122.2°
H9	C13	C14	H15	45.9°	0.1°
H10	C15	C14	H14	47.8°	146.2°
H10	C15	C14	H15	171.2°	24.0°
H11	C15	C14	H14	74.6°	23.7°
H11	C15	C14	H15	48.8°	98.4°

Release date:	2025-10-22
Definition date:	2025-10-14
Last modified:	2025-10-17
Release status:	REL
Processing site:	RCSB
Derived from:	9YON