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Summary Geometry Related PDB entries

A1CPH

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N03	S04	sing	1.70Å	1.69Å	Aromatic
N03	C02	doub	1.31Å	1.32Å	Aromatic
S04	C05	sing	1.72Å	1.73Å	Aromatic
N01	C02	sing	1.39Å	1.45Å
C02	N13	sing	1.32Å	1.32Å	Aromatic
N13	C05	doub	1.32Å	1.32Å	Aromatic
C05	N06	sing	1.38Å	1.46Å
C10	C09	doub	1.38Å	1.38Å	Aromatic
C10	C11	sing	1.38Å	1.39Å	Aromatic
C09	C08	sing	1.38Å	1.39Å	Aromatic
C11	C12	doub	1.38Å	1.39Å	Aromatic
C08	C07	doub	1.39Å	1.39Å	Aromatic
C12	C07	sing	1.39Å	1.39Å	Aromatic
C07	N06	sing	1.40Å	1.46Å
C10	H1	sing	1.08Å	1.08Å
C08	H2	sing	1.08Å	1.08Å
C09	H3	sing	1.08Å	1.08Å
C11	H4	sing	1.08Å	1.08Å
C12	H5	sing	1.08Å	1.08Å
N01	H6	sing	0.97Å	1.00Å
N01	H7	sing	0.97Å	1.00Å
N06	H8	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S04	N03	C02	105.2°	105.8°
N03	S04	C05	95.8°	94.6°
N03	C02	N01	121.6°	121.2°
N03	C02	N13	117.5°	117.7°
S04	C05	N13	104.3°	105.1°
S04	C05	N06	130.2°	127.4°
N01	C02	N13	120.9°	121.2°
C02	N01	H6	109.5°	120.0°
C02	N01	H7	109.5°	120.0°
C02	N13	C05	117.1°	116.8°
N13	C05	N06	125.5°	127.5°
C05	N06	C07	125.8°	120.0°
C05	N06	H8	117.1°	120.0°
C09	C10	C11	120.1°	120.2°
C10	C09	C08	120.0°	120.1°
C09	C10	H1	119.9°	119.9°
C10	C09	H3	120.0°	120.0°
C10	C11	C12	119.7°	120.0°
C11	C10	H1	120.0°	119.9°
C10	C11	H4	120.2°	119.9°
C09	C08	C07	120.2°	119.9°
C09	C08	H2	119.9°	120.1°
C08	C09	H3	120.0°	119.9°
C11	C12	C07	120.5°	120.0°
C12	C11	H4	120.2°	120.0°
C11	C12	H5	119.8°	120.1°
C08	C07	C12	119.5°	119.8°
C08	C07	N06	121.7°	120.1°
C07	C08	H2	119.9°	120.0°
C12	C07	N06	118.8°	120.1°
C07	C12	H5	119.8°	120.0°
C07	N06	H8	117.1°	120.0°
H6	N01	H7	109.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S04	N03	C02	N01	180.0°	179.7°
S04	N03	C02	N13	0.1°	0.0°
N03	S04	C05	N13	0.1°	0.3°
N03	S04	C05	N06	179.6°	179.9°
C02	N03	S04	C05	0.0°	0.2°
N03	C02	N01	N13	180.0°	179.7°
N03	C02	N13	C05	0.2°	0.2°
N03	C02	N01	H6	0.0°	179.8°
N03	C02	N01	H7	120.0°	0.3°
S04	C05	N13	C02	0.1°	0.3°
S04	C05	N13	N06	179.5°	179.6°
S04	C05	N06	C07	10.9°	5.8°
S04	C05	N06	H8	169.1°	174.2°
N01	C02	N13	C05	179.9°	180.0°
C02	N01	H6	H7	120.0°	180.0°
C02	N13	C05	N06	179.7°	180.0°
N13	C02	N01	H6	180.0°	0.0°
N13	C02	N01	H7	60.0°	180.0°
N13	C05	N06	C07	169.7°	173.8°
N13	C05	N06	H8	10.3°	6.3°
C05	N06	C07	C08	41.6°	34.8°
C05	N06	C07	C12	139.8°	145.3°
C05	N06	C07	H8	180.0°	180.0°
C09	C10	C11	H1	180.0°	179.8°
C10	C09	C08	H3	180.0°	180.0°
C09	C10	C11	C12	0.1°	0.1°
C10	C09	C08	C07	0.5°	0.1°
C10	C09	C08	H2	179.5°	180.0°
C09	C10	C11	H4	179.9°	180.0°
C11	C10	C09	C08	0.0°	0.0°
C10	C11	C12	H4	180.0°	180.0°
C10	C11	C12	C07	0.3°	0.0°
C11	C10	C09	H3	180.0°	180.0°
C10	C11	C12	H5	179.7°	180.0°
C09	C08	C07	H2	180.0°	180.0°
C09	C08	C07	C12	0.8°	0.1°
C09	C08	C07	N06	179.4°	180.0°
C08	C09	C10	H1	180.0°	179.8°
C11	C12	C07	C08	0.8°	0.0°
C11	C12	C07	H5	180.0°	180.0°
C11	C12	C07	N06	179.4°	179.9°
C12	C11	C10	H1	179.9°	179.7°
C08	C07	C12	N06	178.6°	179.9°
C07	C08	C09	H3	179.5°	179.9°
C08	C07	C12	H5	179.3°	179.9°
C08	C07	N06	H8	138.4°	145.3°
C12	C07	C08	H2	179.1°	180.0°
C07	C12	C11	H4	179.7°	180.0°
C12	C07	N06	H8	40.2°	34.6°
N06	C07	C08	H2	0.6°	0.1°
N06	C07	C12	H5	0.7°	0.0°
H1	C10	C09	H3	0.0°	0.2°
H1	C10	C11	H4	0.1°	0.3°
H2	C08	C09	H3	0.5°	0.0°
H4	C11	C12	H5	0.3°	0.0°

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PDB entries from 2026-05-20

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