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Summary Geometry Related PDB entries

A1CE8

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P02	O01	doub	1.48Å	1.51Å
O03	P02	sing	1.61Å	1.51Å
O04	P02	sing	1.61Å	1.51Å
C05	P02	sing	1.82Å	1.85Å
CL06	C05	sing	1.80Å	1.78Å
C05	H052	sing	1.09Å	1.10Å
C05	H051	sing	1.09Å	1.10Å
O03	H1	sing	0.97Å	0.95Å
O04	H2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O01	P02	O03	109.9°	109.5°
O01	P02	O04	109.6°	109.5°
O01	P02	C05	109.3°	109.5°
O03	P02	O04	112.0°	109.5°
O03	P02	C05	105.2°	109.5°
P02	O03	H1	109.5°	114.0°
O04	P02	C05	110.8°	109.5°
P02	O04	H2	109.5°	114.0°
P02	C05	CL06	105.7°	109.4°
P02	C05	H052	110.4°	109.4°
P02	C05	H051	110.4°	109.5°
CL06	C05	H052	110.4°	109.4°
CL06	C05	H051	110.4°	109.5°
H052	C05	H051	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O01	P02	O03	O04	122.0°	120.0°
O01	P02	O03	C05	117.5°	120.1°
O01	P02	O04	C05	120.7°	120.0°
O01	P02	C05	CL06	51.7°	60.0°
O01	P02	C05	H052	171.1°	59.9°
O01	P02	C05	H051	67.7°	180.0°
O01	P02	O03	H1	0.0°	179.9°
O01	P02	O04	H2	0.0°	59.9°
O03	P02	O04	C05	117.1°	120.0°
O03	P02	C05	CL06	66.3°	60.0°
O03	P02	C05	H052	53.1°	180.0°
O03	P02	C05	H051	174.3°	60.0°
O03	P02	O04	H2	122.2°	60.0°
O04	P02	C05	CL06	172.5°	180.0°
O04	P02	C05	H052	68.1°	60.1°
O04	P02	C05	H051	53.1°	60.0°
O04	P02	O03	H1	122.1°	60.0°
P02	C05	CL06	H052	119.4°	119.9°
P02	C05	CL06	H051	119.4°	120.0°
P02	C05	H052	H051	121.8°	120.0°
C05	P02	O03	H1	117.5°	60.0°
C05	P02	O04	H2	120.7°	180.0°
CL06	C05	H052	H051	121.8°	120.0°

257179

PDB entries from 2026-07-29

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