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Summary Geometry Related PDB entries

A1BM1

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N1	sing	1.47Å	1.45Å
N1	C2	sing	1.39Å	1.35Å
C2	C3	doub	1.40Å	1.43Å	Aromatic
C3	C4	sing	1.36Å	1.35Å	Aromatic
C4	C5	doub	1.41Å	1.42Å	Aromatic
C5	C6	sing	1.40Å	1.41Å	Aromatic
C6	C7	doub	1.36Å	1.36Å	Aromatic
C7	C8	sing	1.39Å	1.40Å	Aromatic
C8	C9	doub	1.36Å	1.36Å	Aromatic
C9	C10	sing	1.41Å	1.41Å	Aromatic
C10	N2	doub	1.34Å	1.38Å	Aromatic
C2	N2	sing	1.32Å	1.33Å	Aromatic
C5	C10	sing	1.42Å	1.42Å	Aromatic
N1	H4	sing	0.97Å	1.00Å
C4	H6	sing	1.08Å	1.08Å
C6	H7	sing	1.08Å	1.08Å
C7	H8	sing	1.08Å	1.08Å
C8	H9	sing	1.08Å	1.08Å
C1	H3	sing	1.09Å	1.10Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C3	H5	sing	1.08Å	1.08Å
C9	H10	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N1	C2	124.9°	120.0°
C1	N1	H4	105.5°	119.9°
N1	C1	H3	109.5°	109.5°
N1	C1	H1	109.5°	109.4°
N1	C1	H2	109.4°	109.5°
N1	C2	C3	117.0°	119.2°
N1	C2	N2	118.9°	119.2°
C2	N1	H4	105.5°	120.0°
C2	C3	C4	118.5°	119.8°
C3	C2	N2	123.9°	121.5°
C2	C3	H5	120.7°	120.0°
C3	C4	C5	119.8°	118.3°
C3	C4	H6	120.1°	120.8°
C4	C3	H5	120.7°	120.1°
C4	C5	C6	122.5°	121.3°
C4	C5	C10	118.4°	119.1°
C5	C4	H6	120.1°	120.9°
C5	C6	C7	120.4°	119.6°
C6	C5	C10	119.0°	119.6°
C5	C6	H7	119.8°	120.2°
C6	C7	C8	120.4°	120.9°
C7	C6	H7	119.8°	120.2°
C6	C7	H8	119.8°	119.6°
C7	C8	C9	120.8°	121.0°
C8	C7	H8	119.8°	119.5°
C7	C8	H9	119.6°	119.5°
C8	C9	C10	120.1°	119.8°
C9	C8	H9	119.6°	119.5°
C8	C9	H10	120.0°	120.1°
C9	C10	N2	118.9°	121.0°
C9	C10	C5	119.2°	119.1°
C10	C9	H10	120.0°	120.1°
C10	N2	C2	117.3°	121.3°
N2	C10	C5	121.8°	119.9°
H3	C1	H1	109.5°	109.4°
H3	C1	H2	109.5°	109.5°
H1	C1	H2	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N1	C2	H4	122.1°	179.7°
C1	N1	C2	C3	164.6°	0.3°
C1	N1	C2	N2	20.9°	179.7°
N1	C1	H3	H1	120.0°	119.9°
N1	C1	H3	H2	120.0°	120.0°
N1	C1	H1	H2	119.9°	120.0°
N1	C2	C3	N2	174.2°	179.4°
N1	C2	C3	C4	179.7°	180.0°
N1	C2	N2	C10	177.6°	179.7°
C2	N1	C1	H3	180.0°	180.0°
C2	N1	C1	H1	60.0°	60.0°
C2	N1	C1	H2	60.0°	60.0°
N1	C2	C3	H5	0.2°	0.6°
C2	C3	C4	H5	180.0°	179.5°
C2	C3	C4	C5	5.1°	0.0°
C3	C2	N2	C10	3.5°	0.9°
C3	C2	N1	H4	73.3°	180.0°
C2	C3	C4	H6	174.9°	179.7°
C3	C4	C5	H6	180.0°	179.7°
C3	C4	C5	C6	179.6°	179.7°
C4	C3	C2	N2	5.5°	0.6°
C3	C4	C5	C10	3.2°	0.3°
C4	C5	C6	C10	176.4°	180.0°
C4	C5	C6	C7	178.1°	180.0°
C4	C5	C10	C9	179.1°	180.0°
C4	C5	C10	N2	1.2°	0.1°
C4	C5	C6	H7	1.9°	0.0°
C5	C4	C3	H5	174.9°	179.4°
C5	C6	C7	H7	180.0°	180.0°
C5	C6	C7	C8	0.5°	0.1°
C6	C5	C10	C9	2.6°	0.0°
C6	C5	C10	N2	177.7°	179.9°
C6	C5	C4	H6	0.4°	0.0°
C5	C6	C7	H8	179.5°	179.9°
C6	C7	C8	H8	180.0°	179.9°
C6	C7	C8	C9	1.8°	0.0°
C7	C6	C5	C10	1.7°	0.0°
C6	C7	C8	H9	178.1°	180.0°
C7	C8	C9	H9	180.0°	180.0°
C7	C8	C9	C10	0.9°	0.0°
C8	C7	C6	H7	179.5°	180.0°
C7	C8	C9	H10	179.1°	180.0°
C8	C9	C10	H10	180.0°	180.0°
C8	C9	C10	N2	179.0°	179.9°
C8	C9	C10	C5	1.3°	0.1°
C9	C8	C7	H8	178.2°	179.9°
C9	C10	N2	C5	179.7°	179.9°
C9	C10	N2	C2	178.9°	179.4°
C10	C9	C8	H9	179.1°	180.0°
N2	C10	C9	H10	1.0°	0.0°
C2	N2	C10	C5	1.4°	0.7°
N2	C2	N1	H4	101.3°	0.6°
N2	C2	C3	H5	174.5°	180.0°
C10	C5	C4	H6	176.8°	180.0°
C10	C5	C6	H7	178.3°	180.0°
C5	C10	C9	H10	178.7°	179.9°
H4	N1	C1	H3	57.9°	0.3°
H4	N1	C1	H1	62.1°	119.7°
H4	N1	C1	H2	177.9°	120.3°
H6	C4	C3	H5	5.1°	0.3°
H7	C6	C7	H8	0.5°	0.1°
H8	C7	C8	H9	1.9°	0.1°
H9	C8	C9	H10	0.9°	0.1°
H3	C1	H1	H2	120.0°	120.0°

249697

PDB entries from 2026-02-25

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