A1BBB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| O4' | C4' | sing | 1.44Å | 1.47Å | |
| O4' | C1' | sing | 1.44Å | 1.47Å | |
| O2' | C2' | sing | 1.43Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| C1' | N1 | sing | 1.46Å | 1.42Å | |
| OP1 | P | doub | 1.48Å | 1.49Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| C3' | C2' | sing | 1.55Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.57Å | |
| N1 | C6 | sing | 1.37Å | 1.46Å | |
| N1 | C2 | sing | 1.35Å | 1.42Å | |
| O2 | C2 | doub | 1.22Å | 1.19Å | |
| C6 | C5 | doub | 1.35Å | 1.33Å | |
| C2 | N3 | sing | 1.35Å | 1.39Å | |
| O5B | C5A | sing | 1.43Å | 1.42Å | |
| C5 | C5A | sing | 1.51Å | 1.51Å | |
| C5 | C4 | sing | 1.42Å | 1.50Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| C4 | O4 | doub | 1.22Å | 1.21Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5A | H10 | sing | 1.09Å | 1.10Å | |
| C5A | H11 | sing | 1.09Å | 1.10Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O5B | H12 | sing | 0.97Å | 0.95Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 109.8° | 110.6° |
| O3' | C3' | C2' | 116.3° | 110.5° |
| O3' | C3' | H3' | 108.6° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | O4' | C1' | 112.0° | 107.0° |
| O4' | C4' | C3' | 106.8° | 107.3° |
| O4' | C4' | C5' | 109.2° | 109.9° |
| O4' | C4' | H4' | 110.2° | 110.0° |
| O4' | C1' | C2' | 103.2° | 103.5° |
| O4' | C1' | N1 | 110.6° | 110.7° |
| O4' | C1' | H1' | 111.1° | 110.8° |
| O2' | C2' | C1' | 110.0° | 110.9° |
| O2' | C2' | C3' | 109.5° | 110.9° |
| O2' | C2' | H2' | 109.4° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C4' | C5' | 111.3° | 109.9° |
| C4' | C3' | C2' | 105.9° | 104.2° |
| C4' | C3' | H3' | 107.8° | 110.5° |
| C3' | C4' | H4' | 109.7° | 109.9° |
| C4' | C5' | O5' | 110.5° | 109.4° |
| C5' | C4' | H4' | 109.7° | 109.9° |
| C4' | C5' | H5'' | 109.2° | 109.4° |
| C4' | C5' | H5' | 109.2° | 109.5° |
| C2' | C1' | N1 | 109.5° | 110.6° |
| C1' | C2' | C3' | 110.7° | 102.1° |
| C2' | C1' | H1' | 110.4° | 110.6° |
| C1' | C2' | H2' | 108.4° | 110.9° |
| C1' | N1 | C6 | 122.4° | 119.8° |
| C1' | N1 | C2 | 117.3° | 119.7° |
| N1 | C1' | H1' | 111.8° | 110.5° |
| OP1 | P | O5' | 104.0° | 109.5° |
| OP1 | P | OP2 | 113.8° | 109.5° |
| OP1 | P | OP3 | 115.6° | 109.5° |
| C5' | O5' | P | 121.1° | 122.9° |
| O5' | C5' | H5'' | 109.2° | 109.5° |
| O5' | C5' | H5' | 109.2° | 109.5° |
| O5' | P | OP2 | 107.4° | 109.4° |
| O5' | P | OP3 | 105.0° | 109.4° |
| C3' | C2' | H2' | 108.9° | 110.9° |
| C2' | C3' | H3' | 108.1° | 110.5° |
| OP2 | P | OP3 | 110.1° | 109.4° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| C6 | N1 | C2 | 120.2° | 120.6° |
| N1 | C6 | C5 | 120.1° | 119.7° |
| N1 | C6 | H6 | 119.9° | 120.1° |
| N1 | C2 | O2 | 119.4° | 119.6° |
| N1 | C2 | N3 | 118.5° | 120.9° |
| O2 | C2 | N3 | 122.0° | 119.5° |
| C6 | C5 | C5A | 122.3° | 120.4° |
| C6 | C5 | C4 | 119.7° | 119.1° |
| C5 | C6 | H6 | 119.9° | 120.1° |
| C2 | N3 | C4 | 122.4° | 120.2° |
| C2 | N3 | H3 | 118.8° | 119.9° |
| O5B | C5A | C5 | 110.9° | 109.5° |
| O5B | C5A | H10 | 109.1° | 109.5° |
| O5B | C5A | H11 | 109.1° | 109.5° |
| C5A | O5B | H12 | 109.5° | 114.0° |
| C5A | C5 | C4 | 118.0° | 120.4° |
| C5 | C5A | H10 | 109.1° | 109.5° |
| C5 | C5A | H11 | 109.1° | 109.5° |
| C5 | C4 | N3 | 118.8° | 119.4° |
| C5 | C4 | O4 | 119.6° | 120.4° |
| N3 | C4 | O4 | 121.5° | 120.3° |
| C4 | N3 | H3 | 118.8° | 119.8° |
| H5'' | C5' | H5' | 109.4° | 109.5° |
| H10 | C5A | H11 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 123.4° | 120.7° |
| O3' | C3' | C2' | O2' | 5.6° | 20.3° |
| O3' | C3' | C4' | C2' | 126.3° | 118.7° |
| O3' | C3' | C4' | H3' | 118.1° | 122.6° |
| O3' | C3' | C4' | C5' | 117.5° | 119.8° |
| O3' | C3' | C2' | C1' | 127.0° | 97.9° |
| O3' | C3' | C2' | H3' | 122.5° | 122.6° |
| O3' | C3' | C2' | H2' | 114.0° | 143.9° |
| O3' | C3' | C4' | H4' | 4.0° | 1.2° |
| O4' | C4' | C3' | C5' | 119.0° | 119.4° |
| O4' | C4' | C3' | H4' | 119.5° | 119.6° |
| O4' | C4' | C5' | H4' | 120.9° | 121.2° |
| C4' | O4' | C1' | C2' | 12.4° | 40.0° |
| C4' | O4' | C1' | N1 | 104.7° | 158.6° |
| O4' | C4' | C5' | O5' | 60.8° | 67.2° |
| O4' | C4' | C3' | C2' | 2.9° | 2.0° |
| C4' | O4' | C1' | H1' | 130.6° | 78.5° |
| O4' | C4' | C3' | H3' | 118.4° | 116.6° |
| O4' | C4' | C5' | H5'' | 179.0° | 172.8° |
| O4' | C4' | C5' | H5' | 59.3° | 52.8° |
| O4' | C1' | C2' | O2' | 110.7° | 155.3° |
| C1' | O4' | C4' | C3' | 9.9° | 26.5° |
| C1' | O4' | C4' | C5' | 110.4° | 145.9° |
| O4' | C1' | C2' | N1 | 117.8° | 118.5° |
| O4' | C1' | C2' | H1' | 118.8° | 118.6° |
| O4' | C1' | N1 | H1' | 124.3° | 123.1° |
| O4' | C1' | C2' | C3' | 10.4° | 37.0° |
| O4' | C1' | N1 | C6 | 1.3° | 130.9° |
| O4' | C1' | N1 | C2 | 178.8° | 49.3° |
| O4' | C1' | C2' | H2' | 129.7° | 81.2° |
| C1' | O4' | C4' | H4' | 129.1° | 93.0° |
| O2' | C2' | C3' | C4' | 116.7° | 139.1° |
| O2' | C2' | C1' | C3' | 121.1° | 118.2° |
| O2' | C2' | C1' | H2' | 119.6° | 123.5° |
| O2' | C2' | C1' | N1 | 131.5° | 86.2° |
| O2' | C2' | C3' | H2' | 119.5° | 123.6° |
| O2' | C2' | C1' | H1' | 8.1° | 36.6° |
| O2' | C2' | C3' | H3' | 128.0° | 102.3° |
| C3' | C4' | C5' | H4' | 121.6° | 121.0° |
| C4' | C3' | C2' | C1' | 4.8° | 20.9° |
| C3' | C4' | C5' | O5' | 178.4° | 175.0° |
| C4' | C3' | C2' | H3' | 115.3° | 118.6° |
| C4' | C3' | C2' | H2' | 123.8° | 97.3° |
| C3' | C4' | C5' | H5'' | 61.4° | 55.0° |
| C3' | C4' | C5' | H5' | 58.2° | 65.0° |
| C4' | C3' | O3' | HO3' | 180.0° | 176.4° |
| C4' | C5' | O5' | H5'' | 120.1° | 120.0° |
| C4' | C5' | O5' | H5' | 120.2° | 120.0° |
| C4' | C5' | O5' | P | 172.5° | 179.9° |
| C5' | C4' | C3' | C2' | 116.2° | 121.4° |
| C5' | C4' | C3' | H3' | 0.6° | 2.8° |
| C4' | C5' | H5'' | H5' | 119.5° | 120.0° |
| C2' | C1' | N1 | H1' | 122.6° | 122.8° |
| C1' | C2' | C3' | H2' | 119.0° | 118.2° |
| C2' | C1' | N1 | C6 | 114.4° | 115.0° |
| C2' | C1' | N1 | C2 | 65.7° | 64.8° |
| C1' | C2' | C3' | H3' | 110.5° | 139.5° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| N1 | C1' | C2' | C3' | 107.4° | 155.6° |
| C1' | N1 | C6 | C2 | 179.9° | 179.7° |
| C1' | N1 | C2 | O2 | 2.5° | 0.3° |
| C1' | N1 | C6 | C5 | 176.2° | 179.7° |
| C1' | N1 | C2 | N3 | 174.2° | 179.7° |
| C1' | N1 | C6 | H6 | 3.8° | 0.2° |
| N1 | C1' | C2' | H2' | 11.9° | 37.4° |
| OP1 | P | O5' | C5' | 179.1° | 55.0° |
| OP1 | P | O5' | OP2 | 121.0° | 120.0° |
| OP1 | P | O5' | OP3 | 121.9° | 120.1° |
| OP1 | P | OP2 | OP3 | 131.7° | 120.1° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| C5' | O5' | P | OP2 | 58.2° | 175.0° |
| C5' | O5' | P | OP3 | 59.0° | 65.1° |
| O5' | C5' | C4' | H4' | 60.0° | 54.0° |
| O5' | C5' | H5'' | H5' | 119.6° | 120.0° |
| O5' | P | OP2 | OP3 | 113.7° | 119.9° |
| P | O5' | C5' | H5'' | 67.4° | 60.0° |
| P | O5' | C5' | H5' | 52.3° | 60.0° |
| O5' | P | OP3 | HOP3 | 114.0° | 59.9° |
| O5' | P | OP2 | HOP2 | 114.6° | 180.0° |
| C3' | C2' | C1' | H1' | 129.2° | 81.6° |
| C2' | C3' | C4' | H4' | 122.3° | 117.6° |
| C3' | C2' | O2' | HO2' | 58.1° | 67.3° |
| C2' | C3' | O3' | HO3' | 59.8° | 61.5° |
| OP2 | P | OP3 | HOP3 | 130.7° | 60.0° |
| OP3 | P | OP2 | HOP2 | 131.7° | 60.1° |
| C6 | N1 | C2 | O2 | 177.4° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 5.8° | 0.0° |
| N1 | C6 | C5 | C5A | 179.9° | 180.0° |
| N1 | C6 | C5 | C4 | 0.5° | 0.0° |
| C6 | N1 | C1' | H1' | 123.0° | 7.8° |
| N1 | C2 | O2 | N3 | 176.6° | 180.0° |
| C2 | N1 | C6 | C5 | 3.9° | 0.0° |
| N1 | C2 | N3 | C4 | 3.5° | 0.0° |
| N1 | C2 | N3 | H3 | 176.5° | 180.0° |
| C2 | N1 | C6 | H6 | 176.1° | 180.0° |
| C2 | N1 | C1' | H1' | 56.9° | 172.4° |
| O2 | C2 | N3 | C4 | 179.8° | 180.0° |
| O2 | C2 | N3 | H3 | 0.2° | 0.0° |
| C6 | C5 | C5A | O5B | 22.2° | 0.0° |
| C6 | C5 | C5A | C4 | 179.4° | 180.0° |
| C6 | C5 | C4 | N3 | 2.8° | 0.0° |
| C6 | C5 | C4 | O4 | 179.0° | 180.0° |
| C6 | C5 | C5A | H10 | 142.5° | 120.0° |
| C6 | C5 | C5A | H11 | 98.0° | 120.1° |
| C2 | N3 | C4 | C5 | 0.8° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 178.9° | 180.0° |
| O5B | C5A | C5 | H10 | 120.2° | 120.0° |
| O5B | C5A | C5 | H11 | 120.2° | 120.1° |
| O5B | C5A | C5 | C4 | 158.3° | 180.0° |
| O5B | C5A | H10 | H11 | 119.3° | 120.0° |
| C5A | C5 | C4 | N3 | 177.8° | 180.0° |
| C5A | C5 | C4 | O4 | 0.4° | 0.1° |
| C5A | C5 | C6 | H6 | 0.1° | 0.1° |
| C5 | C5A | H10 | H11 | 119.4° | 120.0° |
| C5 | C5A | O5B | H12 | 180.0° | 179.9° |
| C5 | C4 | N3 | O4 | 178.1° | 180.0° |
| C5 | C4 | N3 | H3 | 179.2° | 180.0° |
| C4 | C5 | C6 | H6 | 179.5° | 180.0° |
| C4 | C5 | C5A | H10 | 38.1° | 60.0° |
| C4 | C5 | C5A | H11 | 81.5° | 60.0° |
| O4 | C4 | N3 | H3 | 1.1° | 0.0° |
| H1' | C1' | C2' | H2' | 111.5° | 160.2° |
| H2' | C2' | C3' | H3' | 8.5° | 21.3° |
| H2' | C2' | O2' | HO2' | 61.1° | 56.4° |
| H3' | C3' | C4' | H4' | 122.1° | 123.8° |
| H3' | C3' | O3' | HO3' | 62.4° | 61.0° |
| H4' | C4' | C5' | H5'' | 60.2° | 66.0° |
| H4' | C4' | C5' | H5' | 179.8° | 174.0° |
| H10 | C5A | O5B | H12 | 59.7° | 59.9° |
| H11 | C5A | O5B | H12 | 59.8° | 60.0° |
