English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

A1AXT

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.45Å
O1	C2	sing	1.36Å	1.33Å
C2	N1	doub	1.32Å	1.32Å	Aromatic
N1	C3	sing	1.32Å	1.35Å	Aromatic
C3	C4	doub	1.36Å	1.38Å	Aromatic
C4	C5	sing	1.40Å	1.41Å	Aromatic
C5	C6	sing	1.46Å	1.43Å	Aromatic
C6	C7	doub	1.35Å	1.36Å	Aromatic
C7	N2	sing	1.37Å	1.37Å	Aromatic
N2	C8	sing	1.38Å	1.38Å	Aromatic
C2	C8	sing	1.40Å	1.40Å	Aromatic
C5	C8	doub	1.41Å	1.42Å	Aromatic
C1	H3	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H1	sing	1.09Å	1.10Å
C3	H4	sing	1.08Å	1.08Å
C4	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
N2	H8	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	O1	C2	117.8°	117.0°
O1	C1	H3	109.5°	109.5°
O1	C1	H2	109.5°	109.5°
O1	C1	H1	109.5°	109.5°
O1	C2	N1	122.2°	119.9°
O1	C2	C8	116.8°	119.9°
C2	N1	C3	119.9°	122.5°
N1	C2	C8	120.9°	120.1°
N1	C3	C4	123.7°	121.4°
N1	C3	H4	118.1°	119.3°
C3	C4	C5	117.5°	118.9°
C4	C3	H4	118.1°	119.4°
C3	C4	H5	121.3°	120.5°
C4	C5	C6	134.9°	135.2°
C4	C5	C8	118.6°	118.7°
C5	C4	H5	121.3°	120.6°
C5	C6	C7	107.0°	107.0°
C6	C5	C8	106.4°	106.1°
C5	C6	H6	126.5°	126.5°
C6	C7	N2	110.1°	109.9°
C7	C6	H6	126.5°	126.5°
C6	C7	H7	124.9°	125.0°
C7	N2	C8	108.7°	109.9°
N2	C7	H7	124.9°	125.1°
C7	N2	H8	125.6°	125.1°
N2	C8	C2	133.0°	134.4°
N2	C8	C5	107.7°	107.1°
C8	N2	H8	125.7°	125.0°
C2	C8	C5	119.3°	118.5°
H3	C1	H2	109.5°	109.4°
H3	C1	H1	109.5°	109.5°
H2	C1	H1	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	O1	C2	N1	7.4°	0.1°
C1	O1	C2	C8	172.0°	179.7°
O1	C1	H3	H2	120.0°	120.0°
O1	C1	H3	H1	120.0°	120.0°
O1	C1	H2	H1	120.0°	120.0°
O1	C2	N1	C8	179.4°	179.7°
O1	C2	N1	C3	179.9°	179.7°
O1	C2	C8	N2	0.5°	0.3°
O1	C2	C8	C5	179.8°	179.7°
C2	O1	C1	H3	180.0°	59.9°
C2	O1	C1	H2	60.0°	60.0°
C2	O1	C1	H1	60.0°	179.9°
C2	N1	C3	C4	0.6°	0.1°
N1	C2	C8	N2	179.9°	180.0°
N1	C2	C8	C5	0.4°	0.0°
C2	N1	C3	H4	179.5°	180.0°
N1	C3	C4	H4	180.0°	179.9°
N1	C3	C4	C5	0.4°	0.1°
C3	N1	C2	C8	0.6°	0.0°
N1	C3	C4	H5	179.6°	180.0°
C3	C4	C5	H5	180.0°	179.9°
C3	C4	C5	C6	179.5°	179.9°
C3	C4	C5	C8	0.3°	0.0°
C4	C5	C6	C8	179.2°	180.0°
C4	C5	C6	C7	179.8°	180.0°
C4	C5	C8	N2	180.0°	180.0°
C4	C5	C8	C2	0.3°	0.0°
C5	C4	C3	H4	179.6°	180.0°
C4	C5	C6	H6	0.2°	0.1°
C5	C6	C7	H6	180.0°	179.9°
C5	C6	C7	N2	0.4°	0.1°
C6	C5	C8	N2	0.6°	0.0°
C6	C5	C8	C2	179.7°	180.0°
C6	C5	C4	H5	0.5°	0.0°
C5	C6	C7	H7	179.6°	180.0°
C6	C7	N2	H7	180.0°	180.0°
C6	C7	N2	C8	0.0°	0.0°
C7	C6	C5	C8	0.6°	0.1°
C6	C7	N2	H8	180.0°	179.9°
C7	N2	C8	H8	180.0°	179.9°
C7	N2	C8	C2	180.0°	180.0°
C7	N2	C8	C5	0.3°	0.0°
N2	C7	C6	H6	179.6°	180.0°
N2	C8	C2	C5	179.7°	180.0°
C8	N2	C7	H7	180.0°	180.0°
C2	C8	N2	H8	0.0°	0.1°
C8	C5	C4	H5	179.7°	180.0°
C8	C5	C6	H6	179.4°	179.9°
C5	C8	N2	H8	179.6°	179.9°
H3	C1	H2	H1	120.0°	120.0°
H4	C3	C4	H5	0.4°	0.1°
H6	C6	C7	H7	0.4°	0.1°
H7	C7	N2	H8	0.0°	0.1°

248335

PDB entries from 2026-01-28

PDB statistics

PDBj update info

Contact PDBj

numon