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Summary Geometry Related PDB entries

A1AXN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	trip	1.14Å	1.14Å
C1	C2	sing	1.43Å	1.44Å
C2	C3	doub	1.40Å	1.39Å	Aromatic
C3	C4	sing	1.38Å	1.38Å	Aromatic
C4	C5	doub	1.38Å	1.38Å	Aromatic
C5	C6	sing	1.39Å	1.38Å	Aromatic
C6	C7	doub	1.39Å	1.38Å	Aromatic
C6	N2	sing	1.40Å	1.43Å
N2	C8	sing	1.37Å	1.37Å	Aromatic
C8	C9	doub	1.35Å	1.34Å	Aromatic
C9	N3	sing	1.34Å	1.37Å	Aromatic
N3	C10	doub	1.31Å	1.31Å	Aromatic
C2	C7	sing	1.40Å	1.40Å	Aromatic
N2	C10	sing	1.36Å	1.35Å	Aromatic
C4	H2	sing	1.08Å	1.08Å
C10	H7	sing	1.08Å	1.08Å
C9	H6	sing	1.08Å	1.08Å
C7	H4	sing	1.08Å	1.08Å
C3	H1	sing	1.08Å	1.08Å
C5	H3	sing	1.08Å	1.08Å
C8	H5	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C1	C2	176.2°	179.9°
C1	C2	C3	121.2°	120.1°
C1	C2	C7	119.4°	120.1°
C2	C3	C4	119.5°	120.0°
C3	C2	C7	119.4°	119.8°
C2	C3	H1	120.2°	120.0°
C3	C4	C5	121.1°	120.2°
C3	C4	H2	119.5°	119.9°
C4	C3	H1	120.2°	120.0°
C4	C5	C6	119.4°	120.3°
C5	C4	H2	119.4°	119.9°
C4	C5	H3	120.3°	119.9°
C5	C6	C7	120.2°	120.0°
C5	C6	N2	120.3°	120.0°
C6	C5	H3	120.3°	119.8°
C7	C6	N2	119.4°	120.0°
C6	C7	C2	120.3°	119.8°
C6	C7	H4	119.9°	120.1°
C6	N2	C8	126.9°	126.5°
C6	N2	C10	126.9°	126.5°
N2	C8	C9	106.4°	106.8°
C8	N2	C10	106.2°	107.1°
N2	C8	H5	126.8°	126.6°
C8	C9	N3	110.3°	108.2°
C8	C9	H6	124.9°	125.9°
C9	C8	H5	126.8°	126.5°
C9	N3	C10	105.2°	109.4°
N3	C9	H6	124.9°	126.0°
N3	C10	N2	111.9°	108.5°
N3	C10	H7	124.1°	125.8°
C2	C7	H4	119.8°	120.1°
N2	C10	H7	124.0°	125.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C1	C2	C3	108.4°	29.3°
N1	C1	C2	C7	70.8°	150.3°
C1	C2	C3	C7	179.2°	179.6°
C1	C2	C3	C4	179.7°	180.0°
C1	C2	C7	C6	180.0°	179.7°
C1	C2	C7	H4	0.0°	0.3°
C1	C2	C3	H1	0.3°	0.1°
C2	C3	C4	H1	180.0°	180.0°
C2	C3	C4	C5	1.2°	0.0°
C3	C2	C7	C6	0.8°	0.7°
C2	C3	C4	H2	178.8°	179.7°
C3	C2	C7	H4	179.2°	179.3°
C3	C4	C5	H2	180.0°	179.7°
C3	C4	C5	C6	1.0°	0.2°
C4	C3	C2	C7	1.1°	0.5°
C3	C4	C5	H3	179.0°	179.8°
C4	C5	C6	H3	180.0°	180.0°
C4	C5	C6	C7	0.6°	0.0°
C4	C5	C6	N2	179.8°	179.5°
C5	C4	C3	H1	178.8°	180.0°
C5	C6	C7	N2	179.6°	179.5°
C5	C6	N2	C8	42.9°	0.5°
C5	C6	C7	C2	0.5°	0.5°
C5	C6	N2	C10	136.3°	179.5°
C6	C5	C4	H2	179.1°	180.0°
C5	C6	C7	H4	179.5°	179.5°
C7	C6	N2	C8	136.7°	180.0°
C6	C7	C2	H4	180.0°	180.0°
C7	C6	N2	C10	44.1°	0.0°
C7	C6	C5	H3	179.4°	180.0°
C6	N2	C8	C10	179.4°	180.0°
C6	N2	C8	C9	179.5°	179.9°
C6	N2	C10	N3	179.5°	179.8°
N2	C6	C7	C2	179.9°	180.0°
C6	N2	C10	H7	0.5°	0.0°
N2	C6	C7	H4	0.1°	0.0°
N2	C6	C5	H3	0.2°	0.5°
C6	N2	C8	H5	0.5°	0.1°
N2	C8	C9	H5	180.0°	180.0°
N2	C8	C9	N3	0.0°	0.0°
C8	N2	C10	N3	0.2°	0.2°
C8	N2	C10	H7	179.8°	180.0°
N2	C8	C9	H6	180.0°	179.9°
C8	C9	N3	H6	180.0°	179.9°
C8	C9	N3	C10	0.0°	0.1°
C9	C8	N2	C10	0.1°	0.2°
C9	N3	C10	N2	0.1°	0.2°
C9	N3	C10	H7	179.9°	180.0°
N3	C9	C8	H5	180.0°	180.0°
N3	C10	N2	H7	180.0°	179.8°
C10	N3	C9	H6	179.9°	180.0°
C7	C2	C3	H1	178.9°	179.5°
C10	N2	C8	H5	179.9°	179.8°
H2	C4	C3	H1	1.2°	0.3°
H2	C4	C5	H3	1.0°	0.0°
H6	C9	C8	H5	0.0°	0.1°

248335

PDB entries from 2026-01-28

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