Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

A1A1Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1N1sing1.38Å1.45Å
C1N2sing1.37Å1.47ÅAromatic
C1N3doub1.31Å1.44ÅAromatic
O1C11doub1.21Å1.20Å
C2C3doub1.41Å1.39ÅAromatic
C2N3sing1.36Å1.47ÅAromatic
C2C25sing1.40Å1.42ÅAromatic
N2C3sing1.39Å1.44ÅAromatic
O2C9doub1.21Å1.19Å
C3C4sing1.39Å1.42ÅAromatic
C4C5doub1.38Å1.43ÅAromatic
N4C8sing1.47Å1.49Å
N4C9sing1.35Å1.43Å
C5C6sing1.39Å1.39ÅAromatic
N5C10sing1.47Å1.53Å
N5C11sing1.35Å1.43Å
N5C23sing1.47Å1.50Å
C6C7sing1.51Å1.56Å
C6C25doub1.38Å1.44ÅAromatic
N6C12sing1.47Å1.56Å
N6C22sing1.47Å1.55Å
C7C8sing1.53Å1.60Å
C9C10sing1.51Å1.55Å
C10C24sing1.54Å1.53Å
C11C12sing1.51Å1.59Å
C12C13sing1.53Å1.57Å
C13C14sing1.53Å1.59Å
C14C15sing1.51Å1.59Å
C14C21sing1.53Å1.55Å
C15C16doub1.38Å1.41ÅAromatic
C15C20sing1.38Å1.41ÅAromatic
C16C17sing1.38Å1.40ÅAromatic
C17C18doub1.38Å1.39ÅAromatic
C18C19sing1.38Å1.40ÅAromatic
C19C20doub1.38Å1.41ÅAromatic
C21C22sing1.53Å1.53Å
C23C24sing1.54Å1.56Å
C4H27sing1.08Å1.08Å
N1H6sing0.97Å1.00Å
N1H5sing0.97Å1.00Å
C7H30sing1.09Å1.10Å
C7H29sing1.09Å1.10Å
C5H28sing1.08Å1.08Å
C16H13sing1.08Å1.08Å
N4H7sing0.97Å1.00Å
C14H12sing1.09Å1.10Å
C8H32sing1.09Å1.10Å
C8H31sing1.09Å1.10Å
C13H11sing1.09Å1.10Å
C13H10sing1.09Å1.10Å
C12H9sing1.09Å1.10Å
C10H8sing1.09Å1.10Å
C17H14sing1.08Å1.08Å
C18H15sing1.08Å1.08Å
C19H16sing1.08Å1.08Å
N2H1sing0.97Å1.00Å
C20H17sing1.08Å1.08Å
C22H20sing1.09Å1.10Å
C22H21sing1.09Å1.10Å
C21H18sing1.09Å1.10Å
C21H19sing1.09Å1.10Å
C23H22sing1.09Å1.10Å
C23H23sing1.09Å1.10Å
C24H25sing1.09Å1.10Å
C24H24sing1.09Å1.10Å
C25H26sing1.08Å1.08Å
N6H3sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1C1N2127.6°125.0°
N1C1N3126.6°125.1°
C1N1H6109.5°120.0°
C1N1H5109.5°120.0°
N2C1N3105.8°109.9°
C1N2C3108.2°107.2°
C1N2H1125.9°126.4°
C1N3C2109.0°109.7°
O1C11N5120.2°120.0°
O1C11C12117.2°120.0°
C3C2N3107.2°107.1°
C3C2C25121.7°119.5°
C2C3N2109.8°106.2°
C2C3C4118.7°119.9°
N3C2C25131.0°133.4°
C2C25C6120.8°119.8°
C2C25H26119.6°120.1°
N2C3C4131.4°133.9°
C3N2H1125.9°126.3°
O2C9N4123.7°120.1°
O2C9C10119.2°120.0°
C3C4C5118.5°119.9°
C3C4H27120.8°120.1°
C4C5C6124.3°120.4°
C5C4H27120.7°120.0°
C4C5H28117.9°119.8°
C8N4C9117.9°120.0°
N4C8C7112.1°109.4°
C8N4H7121.0°120.0°
N4C8H32108.8°109.5°
N4C8H31108.8°109.4°
N4C9C10117.1°119.9°
C9N4H7121.0°120.1°
C5C6C7126.4°119.7°
C5C6C25115.9°120.5°
C6C5H28117.9°119.8°
C10N5C11127.9°136.1°
C10N5C2391.8°87.9°
N5C10C9111.3°113.4°
N5C10C2489.2°88.0°
N5C10H8112.3°113.5°
C11N5C23140.3°136.0°
N5C11C12122.5°120.0°
N5C23C2489.3°87.9°
N5C23H22114.2°113.4°
N5C23H23114.3°113.5°
C7C6C25117.6°119.7°
C6C7C8119.7°109.4°
C6C7H30106.9°109.5°
C6C7H29106.9°109.5°
C6C25H26119.6°120.1°
C12N6C22109.6°111.2°
N6C12C11109.5°109.4°
N6C12C13107.4°109.5°
N6C12H9109.2°109.5°
C12N6H3109.4°111.0°
N6C22C21112.7°109.5°
N6C22H20108.6°109.4°
N6C22H21108.6°109.4°
C22N6H3109.5°111.0°
C8C7H30106.9°109.5°
C8C7H29106.9°109.5°
C7C8H32108.8°109.5°
C7C8H31108.8°109.5°
C9C10C24118.0°113.4°
C9C10H8112.0°112.7°
C10C24C2389.6°83.3°
C24C10H8112.2°113.6°
C10C24H25114.2°114.2°
C10C24H24114.2°114.2°
C11C12C13113.0°109.5°
C11C12H9108.8°109.4°
C12C13C14122.7°109.3°
C12C13H11106.1°109.5°
C12C13H10106.1°109.5°
C13C12H9108.9°109.4°
C13C14C15111.7°109.5°
C13C14C21112.2°109.2°
C13C14H12106.2°109.5°
C14C13H11106.1°109.5°
C14C13H10106.1°109.6°
C15C14C21113.4°109.6°
C14C15C16119.2°120.0°
C14C15C20126.0°120.0°
C15C14H12106.1°109.5°
C14C21C22119.1°109.3°
C21C14H12106.6°109.5°
C14C21H18107.0°109.5°
C14C21H19107.0°109.5°
C16C15C20114.8°120.0°
C15C16C17123.5°120.0°
C15C16H13118.3°120.0°
C15C20C19122.6°120.0°
C15C20H17118.7°119.9°
C16C17C18120.8°120.0°
C17C16H13118.3°120.0°
C16C17H14119.6°120.0°
C17C18C19117.4°120.0°
C18C17H14119.6°120.0°
C17C18H15121.3°120.0°
C18C19C20121.0°120.0°
C19C18H15121.3°119.9°
C18C19H16119.5°120.0°
C20C19H16119.5°120.0°
C19C20H17118.7°120.0°
C21C22H20108.6°109.5°
C21C22H21108.7°109.5°
C22C21H18107.0°109.5°
C22C21H19107.0°109.5°
C24C23H22114.3°113.6°
C24C23H23114.2°113.4°
C23C24H25114.2°114.4°
C23C24H24114.2°114.1°
H6N1H5109.5°119.9°
H30C7H29109.5°109.5°
H32C8H31109.4°109.5°
H11C13H10109.4°109.5°
H20C22H21109.5°109.5°
H18C21H19109.5°109.5°
H22C23H23109.5°112.8°
H25C24H24109.5°113.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C1N2N3179.7°179.9°
N1C1N3C2180.0°180.0°
N1C1N2C3179.9°179.9°
C1N1H6H5120.0°179.9°
N1C1N2H10.1°0.0°
C1N2C3C20.0°0.0°
N2C1N3C20.3°0.0°
C1N2C3H1180.0°179.9°
C1N2C3C4180.0°180.0°
N2C1N1H6179.7°0.0°
N2C1N1H560.3°180.0°
C1N3C2C30.3°0.1°
C1N3C2C25180.0°179.9°
N3C1N2C30.2°0.0°
N3C1N1H60.0°179.9°
N3C1N1H5120.0°0.1°
N3C1N2H1179.8°179.9°
O1C11N5C100.8°0.0°
O1C11N5C12179.6°180.0°
O1C11N5C23179.0°179.7°
O1C11C12N66.8°20.0°
O1C11C12C13126.4°100.0°
O1C11C12H9112.5°140.0°
C3C2N3C25179.7°180.0°
C2C3N2C4179.9°179.9°
C2C3C4C50.2°0.1°
C3C2C25C60.2°0.3°
C2C3C4H27179.8°179.7°
C2C3N2H1180.0°180.0°
C3C2C25H26179.9°180.0°
N3C2C3N20.2°0.1°
N3C2C3C4179.9°180.0°
N3C2C25C6179.8°179.7°
N3C2C25H260.2°0.0°
C25C2C3N2179.9°179.9°
C25C2C3C40.1°0.0°
C2C25C6C50.2°0.6°
C2C25C6C7179.6°180.0°
C2C25C6H26180.0°179.7°
N2C3C4C5179.9°180.0°
N2C3C4H270.1°0.2°
O2C9N4C80.2°0.0°
O2C9N4C10178.4°180.0°
O2C9C10N558.7°0.0°
O2C9C10C2442.3°98.4°
O2C9N4H7179.8°180.0°
O2C9C10H8174.8°130.7°
C3C4C5H27180.0°179.8°
C3C4C5C60.2°0.2°
C3C4C5H28179.8°179.7°
C4C3N2H10.1°0.1°
C4C5C6H28180.0°179.9°
C4C5C6C7179.5°179.9°
C4C5C6C250.2°0.5°
C8N4C9H7180.0°180.0°
N4C8C7C6102.1°180.0°
N4C8C7H32120.4°120.0°
N4C8C7H31120.4°119.9°
C8N4C9C10178.2°180.0°
N4C8C7H3019.3°60.0°
N4C8C7H29136.4°60.1°
N4C8H32H31118.8°120.0°
N4C9C10N5119.8°180.0°
C9N4C8C771.6°180.0°
N4C9C10C24139.2°81.6°
C9N4C8H32168.0°60.0°
C9N4C8H3148.8°60.0°
N4C9C10H86.8°49.3°
C5C6C7C25179.3°179.4°
C5C6C7C834.7°90.5°
C6C5C4H27179.8°180.0°
C5C6C7H30156.1°29.4°
C5C6C7H2986.8°149.5°
C5C6C25H26179.8°179.8°
C10N5C11C23178.1°179.6°
N5C10C9C24101.0°98.4°
N5C10C9H8126.5°130.7°
N5C10C24H8113.8°114.8°
C10N5C11C12179.5°180.0°
C10N5C23C241.2°27.3°
C10N5C23H22117.7°87.6°
C10N5C23H23115.2°141.9°
N5C10C24H25117.7°87.5°
N5C10C24H24115.3°139.6°
N5C11C12N6172.9°160.0°
C11N5C10C960.1°38.2°
C11N5C10C24180.0°152.9°
N5C11C12C1353.3°80.0°
C11N5C23C24179.7°152.9°
N5C11C12H967.9°40.0°
C11N5C10H866.2°92.2°
C11N5C23H2263.8°92.1°
C11N5C23H2363.3°38.3°
C23N5C10C9118.6°142.1°
C23N5C11C121.4°0.3°
N5C23C24H22116.4°114.7°
N5C23C24H23116.4°114.8°
C23N5C10H8115.0°87.6°
N5C23H22H23129.6°130.8°
N5C23C24H25117.7°87.4°
N5C23C24H24115.3°139.8°
C6C7C8H30121.4°119.9°
C6C7C8H29121.4°120.0°
C6C7H30H29115.4°120.0°
C7C6C5H280.5°0.0°
C6C7C8H3218.2°60.0°
C6C7C8H31137.4°60.0°
C7C6C25H260.4°0.3°
C25C6C7C8146.1°90.0°
C25C6C7H3024.6°150.0°
C25C6C7H2992.5°30.0°
C25C6C5H28179.8°179.4°
C12N6C22H3120.0°124.1°
N6C12C11C13119.6°120.1°
N6C12C11H9119.2°120.0°
N6C12C13H9118.1°120.0°
N6C12C13C1416.6°59.1°
C12N6C22C2163.9°61.7°
N6C12C13H11138.5°60.8°
N6C12C13H10105.2°179.2°
C12N6C22H20175.6°58.2°
C12N6C22H2156.6°178.2°
C22N6C12C11178.2°178.2°
C22N6C12C1358.8°61.7°
N6C22C21C1421.3°59.1°
N6C22C21H20120.5°120.0°
N6C22C21H21120.5°120.0°
C22N6C12H959.2°58.3°
N6C22H20H21118.5°120.0°
N6C22C21H18142.6°179.2°
N6C22C21H19100.1°60.8°
C8C7H30H29115.4°120.1°
C7C8N4H7108.4°0.0°
C7C8H32H31118.8°120.1°
C9C10C24H8132.4°130.5°
C9C10C24C23112.6°141.0°
C10C9N4H71.8°0.0°
C9C10C24H253.8°27.2°
C9C10C24H24130.9°105.6°
C10C24C23H25116.5°113.6°
C10C24C23H24116.5°113.5°
C10C24C23H22117.6°88.5°
C10C24C23H23115.2°141.0°
C10C24H25H24129.5°133.2°
C11C12C13H9121.0°120.0°
C11C12C13C14137.5°179.1°
C11C12C13H11100.7°59.2°
C11C12C13H1015.6°60.8°
C11C12N6H361.8°57.7°
C12C13C14H11121.8°119.9°
C12C13C14H10121.8°120.0°
C12C13C14C15106.4°177.6°
C12C13C14C2122.2°57.6°
C12C13C14H12138.4°62.3°
C12C13H11H10114.0°120.1°
C13C12N6H361.3°62.4°
C13C14C15C21128.0°119.8°
C13C14C15H12115.3°120.1°
C13C14C21H12115.9°119.9°
C13C14C15C16100.9°120.3°
C13C14C15C2078.1°59.7°
C13C14C21C2219.7°57.6°
C14C13H11H10114.0°120.1°
C14C13C12H9101.5°60.9°
C13C14C21H18101.7°177.6°
C13C14C21H19141.1°62.3°
C15C14C21H12116.4°120.1°
C14C15C16C20179.1°180.0°
C14C15C16C17179.5°180.0°
C14C15C20C19179.6°179.5°
C15C14C21C22108.0°177.6°
C14C15C16H130.5°0.2°
C15C14C13H11131.8°57.7°
C15C14C13H1015.5°62.4°
C14C15C20H170.4°0.0°
C15C14C21H18130.7°62.4°
C15C14C21H1913.4°57.7°
C21C14C15C16131.2°119.9°
C21C14C15C2049.8°60.0°
C14C21C22H18121.3°120.0°
C14C21C22H19121.4°119.9°
C21C14C13H1199.6°62.3°
C21C14C13H10144.1°177.6°
C14C21C22H20141.7°60.8°
C14C21C22H2199.2°179.1°
C14C21H18H19115.6°120.1°
C15C16C17H13180.0°179.8°
C15C16C17C180.0°0.2°
C16C15C20C190.6°0.6°
C16C15C14H1214.5°0.2°
C15C16C17H14180.0°179.7°
C16C15C20H17179.5°179.9°
C20C15C16C170.4°0.1°
C15C20C19C180.3°0.9°
C15C20C19H17180.0°179.5°
C20C15C16H13179.6°179.8°
C20C15C14H12166.5°179.9°
C15C20C19H16179.7°179.8°
C16C17C18H14180.0°179.9°
C16C17C18C190.2°0.1°
C16C17C18H15179.8°179.9°
C17C18C19H15180.0°180.0°
C17C18C19C200.1°0.6°
C18C17C16H13180.0°180.0°
C17C18C19H16179.9°180.0°
C18C19C20H16180.0°179.4°
C19C18C17H14179.8°180.0°
C18C19C20H17179.7°179.6°
C20C19C18H15179.9°179.4°
C22C21C14H12135.6°62.3°
C21C22H20H21118.5°120.0°
C22C21H18H19115.7°120.0°
C21C22N6H356.1°62.4°
C23C24C10H8115.0°88.6°
C24C23H22H23129.5°130.8°
C23C24H25H24129.4°133.2°
H27C4C5H280.2°0.0°
H30C7C8H32139.7°180.0°
H30C7C8H31101.1°59.9°
H29C7C8H32103.2°59.9°
H29C7C8H3116.0°NaN°
H13C16C17H140.0°0.1°
H7N4C8H3212.0°120.0°
H7N4C8H31131.2°120.0°
H12C14C13H1116.5°177.8°
H12C14C13H1099.8°57.7°
H12C14C21H1814.2°57.7°
H12C14C21H19103.1°177.8°
H11C13C12H920.3°179.2°
H10C13C12H9136.6°59.1°
H9C12N6H3179.2°177.6°
H8C10C24H25128.5°157.7°
H8C10C24H241.5°24.8°
H14C17C18H150.2°0.0°
H15C18C19H160.1°0.0°
H16C19C20H170.3°0.3°
H20C22C21H1896.9°59.2°
H20C22C21H1920.4°179.3°
H20C22N6H364.4°177.6°
H21C22C21H1822.1°60.8°
H21C22C21H19139.4°59.2°
H21C22N6H3176.6°57.7°
H22C23C24H25125.8°157.9°
H22C23C24H241.1°25.0°
H23C23C24H251.3°27.4°
H23C23C24H24128.3°105.5°

257629

PDB entries from 2026-08-05

PDB statisticsPDBj update infoContact PDBjnumon