A1A0L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP2	P	sing	1.61Å	1.54Å
P	OP1	doub	1.48Å	1.54Å
P	O3'	sing	1.61Å	1.68Å
C1	O4	sing	1.43Å	1.43Å
O4	C4	sing	1.35Å	1.23Å
C3	C5	sing	1.51Å	1.53Å
O4'	C4'	sing	1.44Å	1.55Å
O4'	C1'	sing	1.44Å	1.32Å
C4	C5	sing	1.41Å	1.40Å
C4	N3	doub	1.32Å	1.33Å
C5	C6	doub	1.35Å	1.40Å
N3	C2	sing	1.33Å	1.34Å
C4'	C3'	sing	1.54Å	1.60Å
C6	N1	sing	1.36Å	1.32Å
C2	N1	sing	1.35Å	1.33Å
C2	O2	doub	1.22Å	1.15Å
N1	C1'	sing	1.46Å	1.43Å
O3'	C3'	sing	1.43Å	1.45Å
C1'	C2'	sing	1.54Å	1.68Å
C3'	C2'	sing	1.54Å	1.28Å
C2'	O2'	sing	1.43Å	1.43Å
OP2	H2	sing	0.97Å	0.95Å
C6	H3	sing	1.08Å	1.08Å
C4'	H4	sing	1.09Å	1.10Å
C4'	H5	sing	1.09Å	1.10Å
C3'	H6	sing	1.09Å	1.10Å
C2'	H7	sing	1.09Å	1.10Å
O2'	H8	sing	0.97Å	0.95Å
C1'	H9	sing	1.09Å	1.10Å
C1	H10	sing	1.09Å	1.10Å
C1	H11	sing	1.09Å	1.10Å
C1	H12	sing	1.09Å	1.10Å
C3	H13	sing	1.09Å	1.10Å
C3	H14	sing	1.09Å	1.10Å
C3	H15	sing	1.09Å	1.10Å
P	OP3	sing	1.61Å	1.60Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP2	P	OP1	114.2°	109.5°
OP2	P	O3'	110.1°	109.5°
P	OP2	H2	109.5°	114.0°
OP2	P	OP3	88.9°	109.5°
OP1	P	O3'	114.5°	109.5°
OP1	P	OP3	107.6°	109.4°
P	O3'	C3'	120.4°	123.0°
O3'	P	OP3	119.1°	109.5°
C1	O4	C4	123.3°	117.0°
O4	C1	H10	109.5°	109.5°
O4	C1	H11	109.4°	109.4°
O4	C1	H12	109.5°	109.5°
O4	C4	C5	120.8°	120.2°
O4	C4	N3	121.9°	120.2°
C3	C5	C4	121.2°	120.5°
C3	C5	C6	119.2°	120.5°
C5	C3	H13	109.5°	109.5°
C5	C3	H14	109.4°	109.4°
C5	C3	H15	109.5°	109.5°
C4'	O4'	C1'	106.1°	105.3°
O4'	C4'	C3'	101.2°	104.8°
O4'	C4'	H4	111.5°	110.4°
O4'	C4'	H5	111.5°	110.5°
O4'	C1'	N1	110.4°	110.4°
O4'	C1'	C2'	106.5°	104.8°
O4'	C1'	H9	109.8°	110.3°
C5	C4	N3	117.3°	119.6°
C4	C5	C6	119.6°	119.0°
C4	N3	C2	122.6°	120.7°
C5	C6	N1	118.6°	119.3°
C5	C6	H3	120.7°	120.3°
N3	C2	N1	120.3°	121.0°
N3	C2	O2	121.3°	119.5°
C4'	C3'	O3'	108.3°	110.5°
C4'	C3'	C2'	105.2°	104.0°
C3'	C4'	H4	111.5°	110.4°
C3'	C4'	H5	111.5°	110.4°
C4'	C3'	H6	109.4°	110.5°
C6	N1	C2	121.6°	120.3°
C6	N1	C1'	121.1°	119.9°
N1	C6	H3	120.7°	120.4°
N1	C2	O2	118.5°	119.4°
C2	N1	C1'	117.3°	119.9°
N1	C1'	C2'	116.5°	110.4°
N1	C1'	H9	108.1°	110.4°
O3'	C3'	C2'	107.5°	110.5°
O3'	C3'	H6	111.6°	110.6°
C1'	C2'	C3'	107.3°	104.1°
C1'	C2'	O2'	105.8°	110.5°
C1'	C2'	H7	108.0°	110.6°
C2'	C1'	H9	105.4°	110.5°
C3'	C2'	O2'	110.1°	110.5°
C2'	C3'	H6	114.6°	110.6°
C3'	C2'	H7	113.9°	110.5°
O2'	C2'	H7	111.2°	110.4°
C2'	O2'	H8	109.5°	114.0°
H4	C4'	H5	109.5°	110.3°
H10	C1	H11	109.5°	109.4°
H10	C1	H12	109.4°	109.5°
H11	C1	H12	109.5°	109.4°
H13	C3	H14	109.5°	109.4°
H13	C3	H15	109.5°	109.5°
H14	C3	H15	109.5°	109.5°
P	OP3	HOP3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP2	P	OP1	O3'	128.2°	120.0°
OP2	P	OP1	OP3	96.9°	120.0°
OP2	P	O3'	OP3	100.3°	120.0°
OP2	P	O3'	C3'	167.5°	65.0°
OP2	P	OP3	HOP3	115.1°	60.0°
OP1	P	O3'	OP3	129.4°	120.0°
OP1	P	O3'	C3'	37.3°	55.1°
OP1	P	OP2	H2	0.0°	180.0°
OP1	P	OP3	HOP3	0.0°	60.0°
P	O3'	C3'	C4'	51.9°	121.5°
P	O3'	C3'	C2'	165.0°	123.9°
O3'	P	OP2	H2	130.5°	60.0°
P	O3'	C3'	H6	68.6°	1.1°
O3'	P	OP3	HOP3	132.4°	180.0°
C1	O4	C4	C5	179.7°	180.0°
C1	O4	C4	N3	0.7°	0.2°
O4	C1	H10	H11	120.0°	120.0°
O4	C1	H10	H12	120.0°	120.1°
O4	C1	H11	H12	120.0°	120.0°
O4	C4	C5	C3	0.2°	0.3°
O4	C4	C5	N3	179.7°	179.7°
O4	C4	C5	C6	179.2°	180.0°
O4	C4	N3	C2	179.8°	180.0°
C4	O4	C1	H10	180.0°	60.0°
C4	O4	C1	H11	60.0°	60.0°
C4	O4	C1	H12	60.0°	180.0°
C3	C5	C4	C6	179.0°	179.7°
C3	C5	C4	N3	179.5°	180.0°
C3	C5	C6	N1	179.8°	179.8°
C3	C5	C6	H3	0.1°	0.2°
C5	C3	H13	H14	120.0°	119.9°
C5	C3	H13	H15	120.0°	120.0°
C5	C3	H14	H15	120.0°	120.0°
O4'	C4'	C3'	H4	118.7°	118.8°
O4'	C4'	C3'	H5	118.6°	118.9°
C4'	O4'	C1'	N1	148.4°	159.4°
O4'	C4'	C3'	O3'	78.7°	94.7°
C4'	O4'	C1'	C2'	21.0°	40.5°
O4'	C4'	C3'	C2'	36.0°	24.0°
O4'	C4'	H4	H5	123.8°	122.3°
O4'	C4'	C3'	H6	159.6°	142.7°
C4'	O4'	C1'	H9	92.6°	78.4°
C1'	O4'	C4'	C3'	34.2°	40.5°
O4'	C1'	N1	C6	76.9°	126.5°
O4'	C1'	N1	C2	101.1°	53.3°
O4'	C1'	N1	C2'	121.6°	115.4°
O4'	C1'	N1	H9	120.1°	122.2°
O4'	C1'	C2'	H9	116.6°	118.8°
O4'	C1'	C2'	C3'	2.5°	24.0°
O4'	C1'	C2'	O2'	115.1°	142.6°
C1'	O4'	C4'	H4	152.8°	159.4°
C1'	O4'	C4'	H5	84.5°	78.4°
O4'	C1'	C2'	H7	125.8°	94.7°
C5	C4	N3	C2	0.1°	0.3°
C4	C5	C6	N1	1.1°	0.0°
C4	C5	C6	H3	178.9°	180.0°
C4	C5	C3	H13	180.0°	0.0°
C4	C5	C3	H14	60.0°	120.0°
C4	C5	C3	H15	60.0°	120.0°
N3	C4	C5	C6	0.5°	0.3°
C4	N3	C2	N1	0.0°	0.0°
C4	N3	C2	O2	179.8°	180.0°
C5	C6	N1	H3	180.0°	180.0°
C5	C6	N1	C2	1.1°	0.2°
C5	C6	N1	C1'	179.0°	180.0°
C6	C5	C3	H13	1.0°	179.7°
C6	C5	C3	H14	121.0°	59.8°
C6	C5	C3	H15	119.1°	60.3°
N3	C2	N1	C6	0.6°	0.2°
N3	C2	N1	O2	179.8°	180.0°
N3	C2	N1	C1'	178.5°	180.0°
C4'	C3'	O3'	C2'	113.2°	114.6°
C4'	C3'	O3'	H6	120.4°	122.6°
C4'	C3'	C2'	C1'	23.8°	0.0°
C4'	C3'	C2'	H6	120.2°	118.6°
C4'	C3'	C2'	O2'	90.9°	118.6°
C3'	C4'	H4	H5	123.9°	122.3°
C4'	C3'	C2'	H7	143.3°	118.8°
C6	N1	C2	C1'	177.9°	179.8°
C6	N1	C2	O2	179.6°	179.7°
C6	N1	C1'	C2'	44.7°	118.2°
C6	N1	C1'	H9	163.1°	4.3°
C2	N1	C1'	C2'	137.3°	62.0°
C2	N1	C6	H3	178.9°	179.8°
C2	N1	C1'	H9	19.0°	175.5°
O2	C2	N1	C1'	1.6°	0.1°
N1	C1'	C2'	H9	119.8°	122.4°
N1	C1'	C2'	C3'	121.0°	142.8°
N1	C1'	C2'	O2'	121.3°	98.6°
C1'	N1	C6	H3	1.0°	0.0°
N1	C1'	C2'	H7	2.2°	24.1°
O3'	C3'	C2'	C1'	91.4°	118.6°
O3'	C3'	C2'	H6	124.6°	122.8°
O3'	C3'	C2'	O2'	153.9°	122.7°
O3'	C3'	C4'	H4	40.0°	24.1°
O3'	C3'	C4'	H5	162.7°	146.4°
O3'	C3'	C2'	H7	28.1°	0.2°
C3'	O3'	P	OP3	92.1°	175.0°
C1'	C2'	C3'	O2'	114.8°	118.6°
C1'	C2'	C3'	H7	119.5°	118.8°
C1'	C2'	O2'	H7	117.0°	122.7°
C1'	C2'	C3'	H6	144.0°	118.6°
C1'	C2'	O2'	H8	180.0°	176.1°
C3'	C2'	O2'	H7	127.3°	122.6°
C2'	C3'	C4'	H4	154.7°	142.8°
C2'	C3'	C4'	H5	82.6°	95.0°
C3'	C2'	O2'	H8	64.3°	61.4°
C3'	C2'	C1'	H9	119.1°	94.8°
O2'	C2'	C3'	H6	29.2°	0.0°
O2'	C2'	C1'	H9	1.5°	23.8°
H2	OP2	P	OP3	108.8°	60.0°
H4	C4'	C3'	H6	81.8°	98.5°
H5	C4'	C3'	H6	40.9°	23.7°
H6	C3'	C2'	H7	96.5°	122.6°
H7	C2'	O2'	H8	63.0°	61.2°
H7	C2'	C1'	H9	117.6°	146.4°
H10	C1	H11	H12	120.0°	120.0°
H13	C3	H14	H15	120.0°	120.0°

Release date:	2024-09-18
Definition date:	2024-07-30
Last modified:	2024-09-13
Release status:	REL
Processing site:	RCSB
Derived from:	9CIH