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SummaryGeometryRelated PDB entries

9Y8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAVCAWdoub1.38Å1.40ÅAromatic
CAVCAUsing1.38Å1.39ÅAromatic
CAWCARsing1.38Å1.41ÅAromatic
CAUCATdoub1.38Å1.40ÅAromatic
CARCASdoub1.39Å1.39ÅAromatic
CATCASsing1.40Å1.38ÅAromatic
CATSAQsing1.77Å1.73Å
OAMSAQdoub1.42Å1.48Å
CASCANsing1.48Å1.37Å
SAQOALdoub1.42Å1.50Å
SAQNAPsing1.67Å1.76Å
CANNAHsing1.36Å1.28ÅAromatic
CANCAOdoub1.38Å1.39ÅAromatic
NAHNAIsing1.40Å1.42ÅAromatic
NAPCAOsing1.41Å1.36Å
NAPCAKsing1.46Å1.46Å
CAOCAJsing1.40Å1.36ÅAromatic
NAICAJdoub1.32Å1.33ÅAromatic
CAJCAGsing1.48Å1.37Å
CAGCAFdoub1.39Å1.37ÅAromatic
CAGCABsing1.39Å1.39ÅAromatic
CAFCAEsing1.38Å1.37ÅAromatic
CABCACdoub1.38Å1.38ÅAromatic
CAECADdoub1.39Å1.39ÅAromatic
CACCADsing1.39Å1.38ÅAromatic
CADFAAsing1.35Å1.23Å
CAKH1sing1.09Å1.10Å
CAKH2sing1.09Å1.10Å
CAKH3sing1.09Å1.10Å
CAUH4sing1.08Å1.08Å
CAVH5sing1.08Å1.08Å
CAWH6sing1.08Å1.08Å
CARH7sing1.08Å1.08Å
NAHH8sing0.97Å1.00Å
CABH9sing1.08Å1.08Å
CACH10sing1.08Å1.08Å
CAEH11sing1.08Å1.08Å
CAFH12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAWCAVCAU118.7°120.3°
CAVCAWCAR120.3°120.3°
CAWCAVH5120.7°119.8°
CAVCAWH6119.9°119.8°
CAVCAUCAT119.7°120.0°
CAVCAUH4120.2°120.0°
CAUCAVH5120.6°119.9°
CAWCARCAS120.8°119.7°
CARCAWH6119.8°119.9°
CAWCARH7119.6°120.2°
CAUCATCAS122.4°120.0°
CAUCATSAQ122.8°120.6°
CATCAUH4120.1°120.0°
CARCASCAT118.0°119.7°
CARCASCAN121.9°121.0°
CASCARH7119.6°120.1°
CASCATSAQ114.8°119.4°
CATCASCAN120.0°119.3°
CATSAQOAM105.3°106.7°
CATSAQOAL112.8°106.6°
CATSAQNAP106.3°105.9°
OAMSAQOAL120.6°123.3°
OAMSAQNAP106.8°106.6°
CASCANNAH126.5°128.4°
CASCANCAO128.1°124.4°
OALSAQNAP104.2°106.6°
SAQNAPCAO110.7°116.5°
SAQNAPCAK116.5°121.8°
NAHCANCAO104.7°107.1°
CANNAHNAI112.8°108.0°
CANNAHH8123.6°126.0°
CANCAONAP121.4°123.4°
CANCAOCAJ109.6°107.8°
NAHNAICAJ104.5°108.9°
NAINAHH8123.6°126.0°
CAONAPCAK116.2°121.7°
NAPCAOCAJ128.6°128.8°
NAPCAKH1109.5°109.5°
NAPCAKH2109.5°109.5°
NAPCAKH3109.5°109.5°
CAOCAJNAI108.2°108.2°
CAOCAJCAG129.5°125.9°
NAICAJCAG122.2°125.9°
CAJCAGCAF123.3°120.1°
CAJCAGCAB119.1°120.1°
CAFCAGCAB117.5°119.8°
CAGCAFCAE122.7°119.9°
CAGCAFH12118.7°120.0°
CAGCABCAC121.8°119.9°
CAGCABH9119.1°120.0°
CAFCAECAD118.6°120.1°
CAFCAEH11120.7°119.9°
CAECAFH12118.6°120.1°
CABCACCAD119.1°120.1°
CACCABH9119.1°120.1°
CABCACH10120.5°119.9°
CAECADCAC120.3°120.2°
CAECADFAA119.4°119.9°
CADCAEH11120.7°119.9°
CACCADFAA120.3°119.9°
CADCACH10120.4°120.0°
H1CAKH2109.5°109.4°
H1CAKH3109.5°109.5°
H2CAKH3109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAWCAVCAUH5180.0°179.9°
CAVCAWCARH6180.0°180.0°
CAWCAVCAUCAT1.2°0.0°
CAVCAWCARCAS0.8°0.1°
CAWCAVCAUH4178.8°180.0°
CAVCAWCARH7179.2°180.0°
CAUCAVCAWCAR1.3°0.2°
CAVCAUCATH4180.0°180.0°
CAVCAUCATCAS0.6°0.5°
CAVCAUCATSAQ178.5°179.5°
CAUCAVCAWH6178.8°179.8°
CAWCARCASH7180.0°179.9°
CAWCARCASCAT0.2°0.6°
CAWCARCASCAN178.0°178.4°
CARCAWCAVH5178.8°179.7°
CAUCATCASCAR0.1°0.9°
CAUCATCASSAQ179.2°180.0°
CAUCATSAQOAM99.8°41.7°
CAUCATCASCAN178.1°178.2°
CAUCATSAQOAL33.5°91.7°
CAUCATSAQNAP147.1°155.0°
CATCAUCAVH5178.9°179.9°
CARCASCATCAN178.2°179.0°
CARCASCATSAQ179.1°179.2°
CARCASCANNAH16.7°14.9°
CARCASCANCAO152.6°164.4°
CASCARCAWH6179.2°179.9°
CASCATSAQOAM79.4°138.2°
CASCATSAQOAL147.3°88.3°
CASCATSAQNAP33.7°25.0°
CATCASCANNAH165.1°166.0°
CATCASCANCAO25.6°14.6°
CASCATCAUH4179.4°179.4°
CATCASCARH7179.8°179.5°
CATSAQOAMOAL128.9°123.7°
CATSAQOAMNAP112.7°112.8°
SAQCATCASCAN2.7°1.8°
CATSAQOALNAP114.9°112.8°
CATSAQNAPCAO44.9°36.8°
CATSAQNAPCAK90.8°142.9°
SAQCATCAUH41.5°0.5°
OAMSAQOALNAP119.7°123.6°
OAMSAQNAPCAO67.2°150.1°
OAMSAQNAPCAK157.1°29.6°
CASCANNAHCAO171.3°179.5°
CASCANNAHNAI173.7°179.7°
CASCANCAONAP11.2°1.0°
CASCANCAOCAJ175.1°179.0°
CANCASCARH72.0°1.5°
CASCANNAHH86.3°0.4°
OALSAQNAPCAO164.2°76.5°
OALSAQNAPCAK28.5°103.8°
SAQNAPCAOCAN26.3°27.4°
SAQNAPCAOCAK135.9°179.7°
SAQNAPCAOCAJ146.1°152.5°
SAQNAPCAKH10.0°84.8°
SAQNAPCAKH2120.0°35.1°
SAQNAPCAKH3120.0°155.2°
CANNAHNAIH8180.0°179.9°
NAHCANCAONAP177.7°179.5°
NAHCANCAOCAJ4.0°0.5°
CANNAHNAICAJ0.1°0.8°
CAOCANNAHNAI2.4°0.2°
CANCAONAPCAJ172.4°179.9°
CANCAONAPCAK109.6°152.3°
CANCAOCAJNAI4.2°1.0°
CANCAOCAJCAG178.3°179.8°
CAOCANNAHH8177.6°179.9°
NAHNAICAJCAO2.6°1.1°
NAHNAICAJCAG179.6°179.7°
NAPCAOCAJNAI177.3°178.9°
NAPCAOCAJCAG5.2°0.3°
CAONAPCAKH1133.3°95.5°
CAONAPCAKH2106.7°144.6°
CAONAPCAKH313.3°24.5°
CAKNAPCAOCAJ78.1°27.8°
NAPCAKH1H2120.0°120.0°
NAPCAKH1H3120.0°120.0°
NAPCAKH2H3120.0°120.1°
CAOCAJNAICAG177.7°179.2°
CAOCAJCAGCAF40.2°43.3°
CAOCAJCAGCAB142.7°137.0°
NAICAJCAGCAF142.6°135.7°
NAICAJCAGCAB34.5°44.0°
CAJNAINAHH8179.9°179.2°
CAJCAGCAFCAB177.1°179.7°
CAJCAGCAFCAE178.9°179.8°
CAJCAGCABCAC179.7°180.0°
CAJCAGCABH90.3°0.1°
CAJCAGCAFH121.1°0.0°
CAGCAFCAEH12180.0°179.8°
CAFCAGCABCAC3.0°0.3°
CAGCAFCAECAD0.3°0.5°
CAFCAGCABH9177.0°179.8°
CAGCAFCAEH11179.7°179.8°
CABCAGCAFCAE1.8°0.5°
CAGCABCACH9180.0°179.9°
CAGCABCACCAD2.8°0.0°
CAGCABCACH10177.2°180.0°
CABCAGCAFH12178.3°179.7°
CAFCAECADH11180.0°179.8°
CAFCAECADCAC0.0°0.2°
CAFCAECADFAA176.9°179.7°
CABCACCADCAE1.2°0.0°
CABCACCADH10180.0°180.0°
CABCACCADFAA178.0°180.0°
CAECADCACFAA176.8°179.9°
CAECADCACH10178.8°180.0°
CADCAECAFH12179.7°179.7°
CADCACCABH9177.2°179.9°
CACCADCAEH11180.0°180.0°
FAACADCACH102.0°0.0°
FAACADCAEH113.2°0.0°
H1CAKH2H3120.0°120.0°
H4CAUCAVH51.2°0.1°
H5CAVCAWH61.2°0.3°
H6CAWCARH70.7°0.1°
H9CABCACH102.8°0.1°
H11CAECAFH120.3°0.0°

222624

PDB entries from 2024-07-17

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