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SummaryGeometryRelated PDB entries

9Y5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CARCAQdoub1.38Å1.39ÅAromatic
CARCASsing1.38Å1.40ÅAromatic
CAQCAPsing1.38Å1.39ÅAromatic
CASCANdoub1.39Å1.40ÅAromatic
CAPCAOdoub1.38Å1.39ÅAromatic
CAPCL1sing1.74Å1.70Å
CANCAOsing1.39Å1.39ÅAromatic
CANNAMsing1.40Å1.32Å
NALNAMsing1.40Å1.22ÅAromatic
NALCAKdoub1.31Å1.32ÅAromatic
NAMCAJsing1.36Å1.35ÅAromatic
CATCAKsing1.51Å1.54Å
CAKCAIsing1.39Å1.32ÅAromatic
CAJCAIdoub1.39Å1.35ÅAromatic
CAJCAEsing1.48Å1.35Å
CAINAHsing1.41Å1.40Å
CAFCAEdoub1.39Å1.40ÅAromatic
CAFCAAsing1.38Å1.40ÅAromatic
CAECADsing1.40Å1.41ÅAromatic
CAACABdoub1.38Å1.40ÅAromatic
NAHSAGsing1.67Å1.66Å
CADSAGsing1.77Å1.63Å
CADCACdoub1.38Å1.39ÅAromatic
CABCACsing1.39Å1.39ÅAromatic
SAGOAWdoub1.42Å1.53Å
SAGOAVdoub1.42Å1.54Å
CATH1sing1.09Å1.10Å
CATH2sing1.09Å1.10Å
CATH3sing1.09Å1.10Å
NAHH4sing0.97Å1.00Å
CACH5sing1.08Å1.08Å
CABH6sing1.08Å1.08Å
CAAH7sing1.08Å1.08Å
CAFH8sing1.08Å1.08Å
CAOH9sing1.08Å1.08Å
CAQH10sing1.08Å1.08Å
CARH11sing1.08Å1.08Å
CASH12sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAQCARCAS120.1°120.1°
CARCAQCAP119.4°120.1°
CARCAQH10120.3°119.9°
CAQCARH11120.0°119.9°
CARCASCAN119.7°120.0°
CASCARH11120.0°120.0°
CARCASH12120.1°120.0°
CAQCAPCAO121.4°120.1°
CAQCAPCL1119.3°120.0°
CAPCAQH10120.3°119.9°
CASCANCAO120.5°119.9°
CASCANNAM122.8°120.1°
CANCASH12120.1°120.0°
CAOCAPCL1119.3°120.0°
CAPCAOCAN118.9°119.9°
CAPCAOH9120.6°120.1°
CAOCANNAM116.3°120.0°
CANCAOH9120.5°120.1°
CANNAMNAL117.1°126.2°
CANNAMCAJ131.8°126.1°
NAMNALCAK109.1°109.0°
NALNAMCAJ110.5°107.7°
NALCAKCAT125.0°125.8°
NALCAKCAI109.0°108.5°
NAMCAJCAI105.6°106.9°
NAMCAJCAE134.3°128.4°
CATCAKCAI126.0°125.7°
CAKCATH1109.5°109.5°
CAKCATH2109.5°109.5°
CAKCATH3109.5°109.5°
CAKCAICAJ105.7°107.9°
CAKCAINAH131.8°128.9°
CAICAJCAE119.6°124.7°
CAJCAINAH122.4°123.2°
CAJCAECAF120.1°121.0°
CAJCAECAD122.4°119.3°
CAINAHSAG112.1°116.4°
CAINAHH4108.8°121.8°
CAECAFCAA120.8°119.7°
CAFCAECAD117.2°119.7°
CAECAFH8119.6°120.1°
CAFCAACAB120.2°120.3°
CAFCAAH7119.9°119.9°
CAACAFH8119.6°120.1°
CAECADSAG117.2°119.5°
CAECADCAC122.4°120.0°
CAACABCAC120.0°120.3°
CAACABH6120.0°119.9°
CABCAAH7119.9°119.9°
NAHSAGCAD100.1°105.9°
NAHSAGOAW110.8°106.6°
NAHSAGOAV113.6°106.6°
SAGNAHH4108.8°121.8°
SAGCADCAC120.4°120.5°
CADSAGOAW106.6°106.6°
CADSAGOAV114.2°106.7°
CADCACCAB119.3°120.0°
CADCACH5120.4°120.0°
CABCACH5120.3°120.0°
CACCABH6120.0°119.8°
OAWSAGOAV111.0°123.3°
H1CATH2109.5°109.4°
H1CATH3109.5°109.4°
H2CATH3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAQCARCASH11180.0°179.7°
CARCAQCAPH10180.0°180.0°
CAQCARCASCAN0.4°0.6°
CARCAQCAPCAO0.8°0.0°
CARCAQCAPCL1179.9°180.0°
CAQCARCASH12179.6°180.0°
CASCARCAQCAP0.3°0.3°
CARCASCANH12180.0°179.4°
CARCASCANCAO2.2°0.6°
CARCASCANNAM174.4°179.7°
CASCARCAQH10179.7°179.7°
CAQCAPCAOCL1179.3°180.0°
CAQCAPCAOCAN2.6°0.1°
CAQCAPCAOH9177.5°180.0°
CAPCAQCARH11179.7°180.0°
CASCANCAOCAP3.2°0.2°
CASCANCAONAM172.7°179.7°
CASCANNAMNAL46.9°50.4°
CASCANNAMCAJ143.1°129.4°
CASCANCAOH9176.8°179.7°
CANCASCARH11179.6°179.7°
CAPCAOCANH9180.0°180.0°
CAPCAOCANNAM176.0°179.9°
CAOCAPCAQH10179.2°179.9°
CL1CAPCAOCAN178.1°180.0°
CL1CAPCAOH91.9°0.0°
CL1CAPCAQH100.1°0.0°
CAOCANNAMNAL125.7°129.2°
CAOCANNAMCAJ44.4°50.9°
CAOCANCASH12177.8°180.0°
CANNAMNALCAJ172.1°179.9°
CANNAMNALCAK175.4°179.7°
CANNAMCAJCAI174.8°179.4°
CANNAMCAJCAE13.8°0.7°
NAMCANCAOH94.0°0.0°
NAMCANCASH125.6°0.3°
NAMNALCAKCAT177.8°179.9°
NAMNALCAKCAI1.1°0.2°
NALNAMCAJCAI4.3°0.5°
NALNAMCAJCAE175.7°179.4°
CAKNALNAMCAJ3.4°0.2°
NALCAKCATCAI178.7°179.7°
NALCAKCAICAJ1.6°0.5°
NALCAKCAINAH178.2°179.1°
NALCAKCATH10.0°89.7°
NALCAKCATH2120.0°30.3°
NALCAKCATH3120.0°150.3°
NAMCAJCAICAK3.4°0.6°
NAMCAJCAICAE172.9°179.9°
NAMCAJCAINAH179.6°179.0°
NAMCAJCAECAF22.1°13.6°
NAMCAJCAECAD165.7°166.9°
CATCAKCAICAJ179.6°179.8°
CATCAKCAINAH2.9°0.6°
CAKCATH1H2120.0°120.0°
CAKCATH1H3120.0°120.0°
CAKCATH2H3120.0°120.0°
CAKCAICAJNAH177.0°179.6°
CAKCAICAJCAE176.3°179.3°
CAKCAINAHSAG140.5°151.8°
CAICAKCATH1178.6°90.0°
CAICAKCATH261.3°150.0°
CAICAKCATH358.6°30.0°
CAKCAINAHH499.1°28.2°
CAICAJCAECAF148.3°166.5°
CAICAJCAECAD23.9°13.0°
CAJCAINAHSAG35.6°28.7°
CAJCAINAHH484.8°151.3°
CAECAJCAINAH6.7°1.0°
CAJCAECAFCAD172.7°179.5°
CAJCAECAFCAA177.0°178.4°
CAJCAECADSAG5.0°2.2°
CAJCAECADCAC176.2°178.1°
CAJCAECAFH83.0°1.6°
CAINAHSAGH4120.4°180.0°
CAINAHSAGCAD53.9°36.9°
CAINAHSAGOAW58.3°76.4°
CAINAHSAGOAV176.0°150.3°
CAECAFCAAH8180.0°180.0°
CAECAFCAACAB3.0°0.1°
CAFCAECADSAG177.5°178.3°
CAFCAECADCAC3.7°1.4°
CAECAFCAAH7177.0°179.9°
CAACAFCAECAD4.3°1.1°
CAFCAACABH7180.0°180.0°
CAFCAACABCAC0.8°0.6°
CAFCAACABH6179.2°179.4°
CAECADSAGNAH40.1°24.8°
CAECADSAGCAC178.8°179.7°
CAECADCACCAB1.7°0.7°
CAECADSAGOAW75.2°88.5°
CAECADSAGOAV161.8°138.0°
CAECADCACH5178.3°179.2°
CADCAECAFH8175.6°178.9°
CAACABCACCAD0.2°0.3°
CAACABCACH6180.0°179.9°
CAACABCACH5179.8°179.8°
CABCAACAFH8177.0°179.9°
NAHSAGCADOAW115.4°113.3°
NAHSAGCADOAV121.6°113.3°
NAHSAGCADCAC141.1°155.5°
NAHSAGOAWOAV127.1°123.5°
SAGCADCACCAB179.6°179.0°
CADSAGOAWOAV124.9°123.7°
CADSAGNAHH466.5°143.1°
SAGCADCACH50.4°1.1°
CADCACCABH5180.0°179.9°
CACCADSAGOAW103.5°91.2°
CACCADSAGOAV19.5°42.2°
CADCACCABH6179.9°179.7°
CACCABCAAH7179.2°179.5°
OAWSAGNAHH4178.7°103.6°
OAVSAGNAHH455.6°29.7°
H1CATH2H3120.0°119.9°
H5CACCABH60.1°0.3°
H6CABCAAH70.8°0.6°
H7CAACAFH83.0°0.1°
H10CAQCARH110.3°0.1°
H11CARCASH120.4°0.3°

246905

PDB entries from 2025-12-31

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