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SummaryGeometryRelated PDB entries

9Y2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C04C02sing1.53Å1.53Å
C01C02sing1.53Å1.52Å
C02C03sing1.53Å1.51Å
C02C05sing1.53Å1.54Å
C05C06sing1.51Å1.53Å
N08C06sing1.35Å1.40Å
N08C09sing1.40Å1.42Å
C06O07doub1.21Å1.22Å
F11C10sing1.35Å1.35Å
C09C10doub1.39Å1.40ÅAromatic
C09C15sing1.39Å1.37ÅAromatic
F16C15sing1.35Å1.32Å
C10C12sing1.38Å1.40ÅAromatic
C15C14doub1.38Å1.39ÅAromatic
C12C13doub1.40Å1.40ÅAromatic
C14C13sing1.40Å1.38ÅAromatic
C13C17sing1.48Å1.50Å
C17O18doub1.22Å1.23Å
C17N19sing1.35Å1.40Å
N19C20sing1.39Å1.39Å
C20N21doub1.30Å1.32ÅAromatic
C20S24sing1.71Å1.72ÅAromatic
N21C22sing1.32Å1.34ÅAromatic
S24C23sing1.76Å1.73ÅAromatic
C22C23doub1.33Å1.38ÅAromatic
C22H1sing1.08Å1.08Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C01H4sing1.09Å1.10Å
C03H5sing1.09Å1.10Å
C03H6sing1.09Å1.10Å
C03H7sing1.09Å1.10Å
C04H8sing1.09Å1.10Å
C04H9sing1.09Å1.10Å
C04H10sing1.09Å1.10Å
C05H11sing1.09Å1.10Å
C05H12sing1.09Å1.10Å
C12H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C23H15sing1.08Å1.08Å
N08H16sing0.97Å1.00Å
N19H17sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C04C02C01108.0°109.5°
C04C02C03109.6°109.5°
C04C02C05110.5°109.4°
C02C04H8109.5°109.5°
C02C04H9109.5°109.5°
C02C04H10109.5°109.5°
C01C02C03106.2°109.5°
C01C02C05113.2°109.5°
C02C01H2109.5°109.5°
C02C01H3109.5°109.5°
C02C01H4109.5°109.5°
C03C02C05109.2°109.4°
C02C03H5109.5°109.4°
C02C03H6109.4°109.4°
C02C03H7109.5°109.5°
C02C05C06112.2°109.4°
C02C05H11108.8°109.5°
C02C05H12108.8°109.4°
C05C06N08116.4°120.0°
C05C06O07125.0°120.0°
C06C05H11108.8°109.5°
C06C05H12108.8°109.5°
C06N08C09127.2°120.0°
N08C06O07118.5°120.0°
C06N08H16116.4°120.0°
N08C09C10119.1°119.9°
N08C09C15120.4°120.0°
C09N08H16116.4°120.0°
F11C10C09119.8°120.0°
F11C10C12120.2°119.9°
C10C09C15120.1°120.1°
C09C10C12119.9°120.1°
C09C15F16119.3°119.9°
C09C15C14121.3°120.1°
F16C15C14119.4°120.0°
C10C12C13118.2°119.9°
C10C12H13120.9°120.1°
C15C14C13118.2°119.9°
C15C14H14120.9°120.1°
C12C13C14122.1°119.9°
C12C13C17119.6°120.1°
C13C12H13120.9°120.0°
C14C13C17118.0°120.0°
C13C14H14120.9°120.1°
C13C17O18118.8°120.0°
C13C17N19116.9°120.1°
O18C17N19124.0°120.0°
C17N19C20120.3°120.0°
C17N19H17119.8°120.0°
N19C20N21124.1°124.9°
N19C20S24125.5°125.0°
C20N19H17119.9°120.0°
N21C20S24110.3°110.1°
C20N21C22114.7°116.9°
C20S24C2392.0°90.3°
N21C22C23115.4°114.5°
N21C22H1122.3°122.8°
S24C23C22107.6°108.1°
S24C23H15126.2°126.0°
C23C22H1122.3°122.7°
C22C23H15126.2°125.9°
H2C01H3109.5°109.5°
H2C01H4109.5°109.5°
H3C01H4109.5°109.4°
H5C03H6109.5°109.5°
H5C03H7109.4°109.5°
H6C03H7109.5°109.5°
H8C04H9109.4°109.5°
H8C04H10109.5°109.5°
H9C04H10109.5°109.4°
H11C05H12109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C04C02C01C03117.5°120.0°
C04C02C01C05122.7°120.0°
C04C02C03C05121.2°119.9°
C04C02C05C06175.5°180.0°
C04C02C01H2180.0°179.9°
C04C02C01H360.0°59.9°
C04C02C01H460.0°60.0°
C04C02C03H5180.0°60.0°
C04C02C03H660.0°60.0°
C04C02C03H760.0°180.0°
C02C04H8H9120.0°120.1°
C02C04H8H10120.0°120.0°
C02C04H9H10120.0°119.9°
C04C02C05H1155.1°60.0°
C04C02C05H1264.0°60.0°
C01C02C03C05122.4°120.0°
C01C02C05C0663.2°60.0°
C02C01H2H3120.0°120.0°
C02C01H2H4120.0°120.0°
C02C01H3H4120.0°120.0°
C01C02C03H563.6°60.0°
C01C02C03H656.4°180.0°
C01C02C03H7176.4°60.0°
C01C02C04H8180.0°59.9°
C01C02C04H960.0°180.0°
C01C02C04H1060.0°60.1°
C01C02C05H11176.4°180.0°
C01C02C05H1257.2°60.0°
C03C02C05C0654.9°60.1°
C03C02C01H262.5°60.0°
C03C02C01H3177.5°180.0°
C03C02C01H457.5°60.0°
C02C03H5H6120.0°119.9°
C02C03H5H7120.0°120.0°
C02C03H6H7120.0°120.0°
C03C02C04H864.7°180.0°
C03C02C04H955.2°59.9°
C03C02C04H10175.3°60.0°
C03C02C05H1165.6°60.0°
C03C02C05H12175.3°180.0°
C02C05C06H11120.4°120.0°
C02C05C06H12120.4°119.9°
C02C05C06N0890.6°180.0°
C02C05C06O0793.0°0.1°
C05C02C01H257.3°60.0°
C05C02C01H362.7°60.0°
C05C02C01H4177.4°180.0°
C05C02C03H558.8°179.9°
C05C02C03H6178.8°60.0°
C05C02C03H761.2°60.0°
C05C02C04H855.7°60.1°
C05C02C04H9175.7°60.0°
C05C02C04H1064.3°179.9°
C02C05H11H12118.7°120.0°
C05C06N08O07176.7°179.9°
C05C06N08C09175.6°175.2°
C06C05H11H12118.8°120.1°
C05C06N08H164.4°4.7°
C06N08C09H16180.0°179.9°
C06N08C09C1058.8°90.6°
C06N08C09C15127.9°89.5°
N08C06C05H11149.0°60.0°
N08C06C05H1229.8°60.1°
C09N08C06O077.7°4.9°
N08C09C10F115.1°0.3°
N08C09C10C15173.3°180.0°
N08C09C15F166.0°0.0°
N08C09C10C12176.1°180.0°
N08C09C15C14175.8°180.0°
O07C06C05H1127.4°120.0°
O07C06C05H12146.6°120.0°
O07C06N08H16172.3°175.2°
F11C10C09C12178.9°179.7°
F11C10C09C15178.3°179.7°
F11C10C12C13178.7°179.7°
F11C10C12H131.3°0.3°
C10C09C15F16179.2°180.0°
C10C09C15C142.6°0.0°
C09C10C12C130.2°0.0°
C09C10C12H13179.8°180.0°
C10C09N08H16121.2°89.5°
C09C15F16C14178.2°180.0°
C15C09C10C122.8°0.0°
C09C15C14C130.6°0.0°
C09C15C14H14179.3°180.0°
C15C09N08H1652.1°90.4°
F16C15C14C13177.6°180.0°
F16C15C14H142.5°0.0°
C10C12C13H13180.0°180.0°
C10C12C13C143.5°0.0°
C10C12C13C17177.1°180.0°
C15C14C13C123.7°0.0°
C15C14C13H14180.0°180.0°
C15C14C13C17177.4°180.0°
C12C13C14C17173.7°180.0°
C12C13C17O18160.8°0.0°
C12C13C17N1912.6°180.0°
C12C13C14H14176.2°180.0°
C14C13C17O1813.0°180.0°
C14C13C17N19173.6°0.0°
C14C13C12H13176.5°180.0°
C13C17O18N19172.9°180.0°
C13C17N19C20175.2°180.0°
C17C13C12H132.9°0.0°
C17C13C14H142.6°0.0°
C13C17N19H174.8°0.0°
O18C17N19C202.1°0.1°
O18C17N19H17177.8°180.0°
C17N19C20H17180.0°179.9°
C17N19C20N21169.7°180.0°
C17N19C20S246.3°0.3°
N19C20N21S24176.5°179.7°
N19C20N21C22178.0°179.7°
N19C20S24C23177.7°179.8°
N21C20S24C231.2°0.0°
C20N21C22C231.0°0.0°
C20N21C22H1179.0°180.0°
N21C20N19H1710.3°0.0°
S24C20N21C221.5°0.0°
C20S24C23C220.7°0.0°
C20S24C23H15179.3°180.0°
S24C20N19H17173.7°179.7°
N21C22C23S240.0°0.0°
N21C22C23H1180.0°180.0°
N21C22C23H15179.9°180.0°
S24C23C22H15180.0°180.0°
S24C23C22H1180.0°179.9°
H1C22C23H150.1°0.0°
H2C01H3H4120.0°120.0°
H5C03H6H7119.9°120.1°
H8C04H9H10120.0°120.0°

250059

PDB entries from 2026-03-04

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