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SummaryGeometryRelated PDB entries

9XK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.51Å1.52Å
C02C03doub1.38Å1.40ÅAromatic
C02C07sing1.39Å1.40ÅAromatic
C03C04sing1.39Å1.40ÅAromatic
C04C05doub1.40Å1.38ÅAromatic
C04S31sing1.76Å1.67ÅAromatic
C05C06sing1.41Å1.41ÅAromatic
C05N08sing1.35Å1.44ÅAromatic
C06C07doub1.37Å1.38ÅAromatic
N08C09doub1.29Å1.37ÅAromatic
C09N10sing1.39Å1.46Å
C09S31sing1.76Å1.68ÅAromatic
N10C11sing1.35Å1.45Å
C11O12doub1.21Å1.19Å
C11C13sing1.51Å1.53Å
C13S14sing1.81Å1.82Å
S14C15sing1.76Å1.81Å
C15N16doub1.31Å1.49Å
C15N24sing1.36Å1.51Å
N16C17sing1.35Å1.44Å
C17C18doub1.38Å1.54Å
C17C21sing1.51Å1.67Å
C18S19sing1.77Å1.69Å
C18C22sing1.41Å1.49Å
S19C20sing1.83Å1.68Å
C20C21sing1.54Å1.59Å
C22O23doub1.22Å1.18Å
C22N24sing1.35Å1.46Å
N24C25sing1.40Å1.46Å
C25C26doub1.39Å1.39ÅAromatic
C25C30sing1.39Å1.39ÅAromatic
C26C27sing1.38Å1.39ÅAromatic
C27C28doub1.38Å1.39ÅAromatic
C28C29sing1.38Å1.38ÅAromatic
C29C30doub1.38Å1.38ÅAromatic
C01H013sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C03H031sing1.08Å1.08Å
C06H061sing1.08Å1.08Å
C07H071sing1.08Å1.08Å
N10H101sing0.97Å1.00Å
C13H131sing1.09Å1.10Å
C13H132sing1.09Å1.10Å
C20H201sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
C21H211sing1.09Å1.10Å
C21H212sing1.09Å1.10Å
C26H261sing1.08Å1.08Å
C27H271sing1.08Å1.08Å
C28H281sing1.08Å1.08Å
C29H291sing1.08Å1.08Å
C30H301sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C02C03120.0°120.1°
C01C02C07119.4°120.0°
C02C01H013109.5°109.5°
C02C01H011109.4°109.5°
C02C01H012109.4°109.4°
C03C02C07120.5°120.0°
C02C03C04120.0°120.2°
C02C03H031120.0°119.9°
C02C07C06119.6°120.6°
C02C07H071120.2°119.7°
C03C04C05119.1°120.4°
C03C04S31135.3°131.2°
C04C03H031120.0°119.9°
C05C04S31105.7°108.4°
C04C05C06121.0°118.4°
C04C05N08116.2°112.9°
C04S31C0998.5°90.4°
C06C05N08122.8°128.7°
C05C06C07119.8°120.4°
C05C06H061120.1°119.8°
C05N08C09110.9°117.9°
C07C06H061120.1°119.8°
C06C07H071120.2°119.7°
N08C09N10122.1°124.8°
N08C09S31108.7°110.3°
N10C09S31129.1°124.8°
C09N10C11122.9°120.0°
C09N10H101118.5°120.0°
N10C11O12120.2°119.9°
N10C11C13119.6°120.0°
C11N10H101118.5°120.0°
O12C11C13120.2°120.1°
C11C13S14116.0°109.4°
C11C13H131107.8°109.5°
C11C13H132107.8°109.5°
C13S14C15105.0°100.0°
S14C13H131107.8°109.5°
S14C13H132107.8°109.4°
S14C15N16117.3°119.0°
S14C15N24122.1°119.1°
N16C15N24120.6°121.9°
C15N16C17120.7°122.4°
C15N24C22119.5°119.0°
C15N24C25120.1°120.5°
N16C17C18119.2°117.6°
N16C17C21131.6°126.9°
C18C17C21109.2°115.6°
C17C18S19107.3°108.5°
C17C18C22120.1°120.4°
C17C21C20106.6°110.5°
C17C21H211110.2°109.3°
C17C21H212110.2°109.3°
S19C18C22132.6°131.1°
C18S19C20104.8°96.5°
C18C22O23120.2°120.6°
C18C22N24119.9°118.8°
S19C20C21105.0°100.9°
S19C20H201110.6°111.1°
S19C20H202110.6°111.1°
C21C20H201110.6°111.1°
C21C20H202110.6°111.2°
C20C21H211110.2°109.3°
C20C21H212110.2°109.3°
O23C22N24120.0°120.7°
C22N24C25120.3°120.5°
N24C25C26120.9°120.0°
N24C25C30119.3°120.1°
C26C25C30119.9°119.9°
C25C26C27119.8°119.9°
C25C26H261120.1°120.1°
C25C30C29120.2°119.9°
C25C30H301119.9°120.0°
C26C27C28120.3°120.1°
C27C26H261120.1°120.0°
C26C27H271119.9°120.0°
C27C28C29119.9°120.2°
C28C27H271119.8°119.9°
C27C28H281120.0°119.9°
C28C29C30119.9°120.1°
C29C28H281120.1°119.9°
C28C29H291120.0°120.0°
C30C29H291120.0°119.9°
C29C30H301119.9°120.0°
H013C01H011109.5°109.5°
H013C01H012109.5°109.5°
H011C01H012109.5°109.5°
H131C13H132109.5°109.5°
H201C20H202109.5°111.0°
H211C21H212109.5°109.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C02C03C07179.5°179.8°
C01C02C03C04179.6°180.0°
C01C02C07C06179.6°179.7°
C02C01H013H011120.0°120.0°
C02C01H013H012120.0°120.0°
C02C01H011H012120.0°120.0°
C01C02C03H0310.4°0.0°
C01C02C07H0710.4°0.1°
C02C03C04H031180.0°180.0°
C02C03C04C050.1°0.0°
C02C03C04S31179.9°180.0°
C03C02C07C060.0°0.5°
C03C02C01H01389.8°90.0°
C03C02C01H011150.2°150.0°
C03C02C01H01230.3°30.0°
C03C02C07H071180.0°179.7°
C07C02C03C040.0°0.2°
C02C07C06C050.1°0.6°
C02C07C06H071180.0°179.8°
C07C02C01H01389.8°90.2°
C07C02C01H01130.2°29.8°
C07C02C01H012150.2°149.8°
C07C02C03H031180.0°179.8°
C02C07C06H061179.9°179.7°
C03C04C05S31179.9°180.0°
C03C04C05C060.2°0.1°
C03C04C05N08180.0°180.0°
C03C04S31C09179.1°180.0°
C04C05C06N08179.8°179.9°
C04C05C06C070.2°0.4°
C04C05N08C091.2°0.0°
C05C04S31C090.7°0.0°
C05C04C03H031179.9°180.0°
C04C05C06H061179.8°180.0°
S31C04C05C06180.0°180.0°
S31C04C05N080.2°0.0°
C04S31C09N081.4°0.0°
C04S31C09N10176.7°180.0°
S31C04C03H0310.1°0.1°
C05C06C07H061180.0°179.7°
C06C05N08C09179.0°179.9°
C05C06C07H071179.9°179.6°
N08C05C06C07180.0°179.7°
C05N08C09N10177.3°180.0°
C05N08C09S311.6°0.0°
N08C05C06H0610.0°0.0°
N08C09N10S31174.8°180.0°
N08C09N10C11175.5°0.0°
N08C09N10H1014.5°180.0°
C09N10C11H101180.0°180.0°
C09N10C11O122.7°0.0°
C09N10C11C13176.1°180.0°
S31C09N10C110.7°180.0°
S31C09N10H101179.3°0.0°
N10C11O12C13178.8°180.0°
N10C11C13S1474.7°180.0°
N10C11C13H13146.3°60.0°
N10C11C13H132164.4°60.1°
O12C11C13S14106.5°0.0°
O12C11N10H101177.3°180.0°
O12C11C13H131132.6°120.0°
O12C11C13H13214.4°119.9°
C11C13S14H131120.9°120.0°
C11C13S14H132121.0°120.0°
C11C13S14C1598.3°180.0°
C13C11N10H1013.9°0.0°
C11C13H131H132117.1°120.1°
C13S14C15N165.7°0.0°
C13S14C15N24174.8°179.8°
S14C13H131H132117.0°119.9°
S14C15N16N24179.6°179.7°
S14C15N16C17179.6°180.0°
S14C15N24C22179.8°179.9°
S14C15N24C251.1°0.2°
C15S14C13H131140.8°60.0°
C15S14C13H13222.7°60.0°
C15N16C17C180.1°0.3°
C15N16C17C21179.7°179.2°
N16C15N24C220.3°0.4°
N16C15N24C25179.4°179.9°
N24C15N16C170.1°0.3°
C15N24C22C180.3°0.5°
C15N24C22O23179.9°179.8°
C15N24C22C25179.1°179.7°
C15N24C25C2672.9°90.0°
C15N24C25C30106.8°89.7°
N16C17C18C21179.7°179.6°
N16C17C18S19180.0°179.5°
N16C17C18C220.1°0.4°
N16C17C21C20163.4°159.9°
N16C17C21H21177.0°79.9°
N16C17C21H21243.9°39.6°
C17C18S19C22179.9°179.9°
C17C18S19C2015.4°14.9°
C18C17C21C2017.0°20.6°
C17C18C22O23179.9°179.8°
C17C18C22N240.2°0.6°
C18C17C21H211102.6°99.6°
C18C17C21H212136.5°140.9°
C21C17C18S190.3°0.9°
C21C17C18C22179.8°179.1°
C17C21C20S1925.9°28.0°
C17C21C20H211119.5°120.3°
C17C21C20H212119.6°120.3°
C17C21C20H20193.3°89.8°
C17C21C20H202145.2°146.0°
C17C21H211H212121.3°119.5°
C18S19C20C2125.5°24.5°
S19C18C22O230.1°0.3°
S19C18C22N24179.7°179.4°
C18S19C20H20193.7°93.4°
C18S19C20H202144.8°142.5°
C22C18S19C20164.5°165.0°
C18C22O23N24179.8°179.6°
C18C22N24C25179.5°179.8°
S19C20C21H201119.3°117.9°
S19C20C21H202119.3°117.9°
S19C20H201H202122.1°124.2°
S19C20C21H21193.6°92.2°
S19C20C21H212145.5°148.3°
C21C20H201H202122.1°124.3°
C20C21H211H212121.3°119.5°
O23C22N24C250.8°0.1°
C22N24C25C26108.0°90.3°
C22N24C25C3072.3°90.0°
N24C25C26C30179.6°179.7°
N24C25C26C27179.9°180.0°
N24C25C30C29179.8°179.7°
N24C25C26H2610.1°0.0°
N24C25C30H3010.2°0.0°
C25C26C27H261180.0°180.0°
C25C26C27C280.1°0.0°
C26C25C30C290.1°0.6°
C25C26C27H271179.9°180.0°
C26C25C30H301179.9°179.7°
C30C25C26C270.2°0.3°
C25C30C29C280.0°0.7°
C25C30C29H301180.0°179.6°
C30C25C26H261179.8°179.7°
C25C30C29H291179.9°179.7°
C26C27C28H271180.0°180.0°
C26C27C28C290.1°0.0°
C26C27C28H281179.9°180.0°
C27C28C29H281180.0°180.0°
C27C28C29C300.1°0.3°
C28C27C26H261179.9°180.0°
C27C28C29H291179.8°180.0°
C28C29C30H291180.0°179.7°
C29C28C27H271179.9°180.0°
C28C29C30H301179.9°179.7°
C30C29C28H281179.9°179.7°
H013C01H011H012120.0°120.0°
H061C06C07H0710.1°0.0°
H201C20C21H211147.1°149.9°
H201C20C21H21226.2°30.5°
H202C20C21H21125.7°25.7°
H202C20C21H21295.2°93.7°
H261C26C27H2710.1°0.0°
H271C27C28H2810.1°0.0°
H281C28C29H2910.2°0.0°
H291C29C30H3010.1°0.0°

249697

PDB entries from 2026-02-25

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