Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9VC

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C17C18doub1.38Å1.39ÅAromatic
C17C16sing1.38Å1.39ÅAromatic
C18C19sing1.38Å1.38ÅAromatic
C16C15doub1.38Å1.39ÅAromatic
C19C20doub1.38Å1.40ÅAromatic
C15C20sing1.38Å1.39ÅAromatic
C15C14sing1.51Å1.54Å
C14O13sing1.45Å1.45Å
NZCEsing1.47Å1.48Å
NZC11sing1.35Å1.44Å
O13C11sing1.35Å1.42Å
CECDsing1.53Å1.53Å
C11O12doub1.22Å1.22Å
CDCGsing1.53Å1.52Å
CGCBsing1.53Å1.53Å
OCdoub1.21Å1.36Å
CCAsing1.51Å1.55Å
COXTsing1.34Å1.36Å
CBCAsing1.53Å1.54Å
CANsing1.47Å1.47Å
C17H17sing1.08Å1.08Å
C20H20sing1.08Å1.08Å
CAHAsing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
CGHG2sing1.09Å1.10Å
CGHG3sing1.09Å1.10Å
CDHD2sing1.09Å1.10Å
CDHD3sing1.09Å1.10Å
CEHE2sing1.09Å1.10Å
CEHE3sing1.09Å1.10Å
C14H12sing1.09Å1.10Å
C14H13sing1.09Å1.10Å
C16H16sing1.08Å1.08Å
C18H18sing1.08Å1.08Å
C19H19sing1.08Å1.08Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
NZHZsing0.97Å1.00Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C18C17C16119.5°120.0°
C17C18C19120.0°120.0°
C18C17H17120.2°120.0°
C17C18H18120.0°120.0°
C17C16C15120.9°120.0°
C16C17H17120.2°120.0°
C17C16H16119.6°120.0°
C18C19C20120.4°120.0°
C19C18H18120.0°119.9°
C18C19H19119.8°120.0°
C16C15C20119.4°120.0°
C16C15C14120.3°120.0°
C15C16H16119.6°120.0°
C19C20C15119.8°120.0°
C19C20H20120.1°120.0°
C20C19H19119.8°120.0°
C20C15C14120.3°120.0°
C15C20H20120.1°120.0°
C15C14O13108.6°109.5°
C15C14H12109.7°109.5°
C15C14H13109.7°109.5°
C14O13C11113.4°117.0°
O13C14H12109.7°109.5°
O13C14H13109.7°109.4°
CENZC11118.5°120.0°
NZCECD110.5°109.5°
NZCEHE2109.2°109.4°
NZCEHE3109.2°109.5°
CENZHZ120.8°119.9°
NZC11O13121.6°120.0°
NZC11O12119.5°120.0°
C11NZHZ120.7°120.0°
O13C11O12118.9°120.0°
CECDCG113.2°109.5°
CECDHD2108.6°109.4°
CECDHD3108.5°109.5°
CDCEHE2109.2°109.4°
CDCEHE3109.2°109.5°
CDCGCB111.1°109.4°
CDCGHG2109.1°109.5°
CDCGHG3109.1°109.5°
CGCDHD2108.5°109.4°
CGCDHD3108.5°109.5°
CGCBCA111.9°109.4°
CGCBHB2108.9°109.5°
CGCBHB3108.8°109.5°
CBCGHG2109.1°109.5°
CBCGHG3109.0°109.5°
OCCA122.0°120.0°
OCOXT119.1°120.1°
CACOXT118.9°120.0°
CCACB114.4°109.5°
CCAN107.8°109.5°
CCAHA107.6°109.5°
COXTHXT109.5°117.0°
CBCAN110.8°109.4°
CBCAHA107.6°109.5°
CACBHB2108.8°109.5°
CACBHB3108.8°109.4°
NCAHA108.5°109.5°
CANH109.5°111.0°
CANH2109.5°111.0°
HB2CBHB3109.5°109.5°
HG2CGHG3109.5°109.5°
HD2CDHD3109.5°109.4°
HE2CEHE3109.5°109.4°
H12C14H13109.4°109.5°
HNH2109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C18C17C16H17180.0°179.2°
C17C18C19H18180.0°179.2°
C18C17C16C151.3°0.5°
C17C18C19C200.3°0.6°
C18C17C16H16178.7°179.5°
C17C18C19H19179.7°180.0°
C16C17C18C190.9°0.8°
C17C16C15H16180.0°180.0°
C17C16C15C201.0°0.0°
C17C16C15C14180.0°179.7°
C16C17C18H18179.0°180.0°
C18C19C20H19180.0°179.4°
C18C19C20C150.0°0.1°
C19C18C17H17179.0°180.0°
C18C19C20H20180.0°180.0°
C16C15C20C190.4°0.3°
C16C15C20C14179.0°179.7°
C16C15C14O13156.0°89.7°
C15C16C17H17178.7°179.7°
C16C15C20H20179.6°179.7°
C16C15C14H1236.1°30.3°
C16C15C14H1384.1°150.3°
C19C20C15H20180.0°180.0°
C19C20C15C14179.4°179.9°
C20C19C18H18179.7°179.8°
C20C15C14O1325.0°90.0°
C20C15C14H12144.9°150.0°
C20C15C14H1394.9°30.0°
C20C15C16H16179.0°180.0°
C15C20C19H19180.0°179.4°
C15C14O13H12119.9°120.0°
C15C14O13H13119.9°120.0°
C15C14O13C1197.8°180.0°
C14C15C20H200.6°0.0°
C15C14H12H13120.4°120.0°
C14C15C16H160.0°0.3°
C14O13C11NZ95.9°180.0°
C14O13C11O1283.3°0.1°
O13C14H12H13120.4°120.0°
CENZC11HZ180.0°179.9°
CENZC11O13172.0°180.0°
NZCECDHE2120.1°120.0°
NZCECDHE3120.1°120.1°
CENZC11O128.9°0.1°
NZCECDCG165.3°180.0°
NZCECDHD274.1°60.0°
NZCECDHD344.7°59.9°
NZCEHE2HE3119.5°120.0°
NZC11O13O12179.1°179.9°
C11NZCECD59.9°180.0°
C11NZCEHE2180.0°60.0°
C11NZCEHE360.3°59.9°
C11O13C14H1222.1°60.0°
C11O13C14H13142.4°60.0°
O13C11NZHZ8.0°0.1°
CECDCGHD2120.6°120.0°
CECDCGHD3120.5°120.1°
CECDCGCB153.9°180.0°
CECDCGHG233.6°60.0°
CECDCGHG385.9°60.0°
CECDHD2HD3118.3°120.0°
CDCEHE2HE3119.5°120.0°
CDCENZHZ120.2°0.1°
O12C11NZHZ171.1°180.0°
CDCGCBHG2120.3°120.0°
CDCGCBHG3120.3°120.0°
CDCGCBCA73.4°180.0°
CDCGCBHB2166.3°60.0°
CDCGCBHB347.0°60.0°
CDCGHG2HG3119.3°120.0°
CGCDHD2HD3118.3°120.0°
CGCDCEHE245.1°60.0°
CGCDCEHE374.6°59.9°
CGCBCAC86.8°175.0°
CGCBCAHB2120.4°120.0°
CGCBCAHB3120.3°120.0°
CGCBCAN151.1°65.0°
CGCBCAHA32.7°55.0°
CGCBHB2HB3118.9°120.0°
CBCGHG2HG3119.2°120.0°
CBCGCDHD285.5°60.0°
CBCGCDHD333.4°59.9°
OCCAOXT179.7°180.0°
OCCACB19.6°99.9°
OCCAN143.3°20.0°
OCCAHA99.9°140.0°
OCOXTHXT0.0°0.0°
CCACBN122.1°120.0°
CCACBHA119.5°120.0°
CCANHA116.2°120.0°
CCACBHB233.6°65.0°
CCACBHB3152.9°55.0°
CCANH180.0°63.9°
CCANH260.0°60.0°
CACOXTHXT179.7°180.0°
OXTCCACB160.6°80.0°
OXTCCAN36.9°160.0°
OXTCCAHA79.9°40.0°
CBCANHA117.9°120.0°
CACBHB2HB3118.9°120.0°
CACBCGHG246.9°60.0°
CACBCGHG3166.4°60.1°
CBCANH54.1°176.1°
CBCANH2174.1°60.0°
NCACBHB288.5°55.0°
NCACBHB330.8°175.0°
CANHH2120.0°124.0°
H17C17C16H161.3°0.3°
H17C17C18H181.0°0.8°
H20C20C19H190.0°0.6°
HACACBHB2153.1°175.0°
HACACBHB387.6°65.0°
HACANH63.8°56.1°
HACANH256.2°180.0°
HB2CBCGHG273.5°180.0°
HB2CBCGHG346.0°59.9°
HB3CBCGHG2167.2°59.9°
HB3CBCGHG373.3°NaN°
HG2CGCDHD2154.2°180.0°
HG2CGCDHD386.9°60.1°
HG3CGCDHD234.7°60.0°
HG3CGCDHD3153.6°179.9°
HD2CDCEHE2165.7°NaN°
HD2CDCEHE346.0°60.0°
HD3CDCEHE275.4°60.0°
HD3CDCEHE3164.9°NaN°
HE2CENZHZ0.0°120.0°
HE3CENZHZ119.7°120.0°
H18C18C19H190.3°0.9°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon