9SF
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | C39 | sing | 1.53Å | 1.52Å | |
| C5' | C6' | sing | 1.53Å | 1.53Å | |
| O7' | C39 | sing | 1.43Å | 1.41Å | |
| C39 | C2' | sing | 1.53Å | 1.53Å | |
| C6' | N1' | sing | 1.47Å | 1.42Å | |
| C2' | N1' | sing | 1.47Å | 1.45Å | |
| C2' | C3' | sing | 1.53Å | 1.53Å | |
| C3' | C21 | sing | 1.51Å | 1.56Å | |
| C21 | O4' | doub | 1.21Å | 1.18Å | |
| C21 | C1' | sing | 1.51Å | 1.55Å | |
| C1' | N3 | sing | 1.46Å | 1.48Å | |
| N3 | C2 | sing | 1.36Å | 1.41Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| O11 | C4 | doub | 1.22Å | 1.41Å | |
| C2 | N1 | doub | 1.30Å | 1.35Å | |
| C4 | C10 | sing | 1.47Å | 1.51Å | |
| N1 | C9 | sing | 1.36Å | 1.37Å | |
| C10 | C9 | doub | 1.41Å | 1.57Å | Aromatic |
| C10 | C5 | sing | 1.39Å | 1.52Å | Aromatic |
| C9 | C8 | sing | 1.40Å | 1.38Å | Aromatic |
| C5 | C6 | doub | 1.38Å | 1.49Å | Aromatic |
| C8 | C7 | doub | 1.38Å | 1.38Å | Aromatic |
| C6 | C7 | sing | 1.39Å | 1.05Å | Aromatic |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| C5 | H2 | sing | 1.08Å | 1.08Å | |
| C6 | H3 | sing | 1.08Å | 1.08Å | |
| C7 | H4 | sing | 1.08Å | 1.08Å | |
| C8 | H5 | sing | 1.08Å | 1.08Å | |
| C1' | H6 | sing | 1.09Å | 1.10Å | |
| C1' | H7 | sing | 1.09Å | 1.10Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| C3' | H10 | sing | 1.09Å | 1.10Å | |
| C39 | H11 | sing | 1.09Å | 1.10Å | |
| C4' | H12 | sing | 1.09Å | 1.10Å | |
| C4' | H13 | sing | 1.09Å | 1.10Å | |
| C5' | H14 | sing | 1.09Å | 1.10Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| C6' | H16 | sing | 1.09Å | 1.10Å | |
| C6' | H17 | sing | 1.09Å | 1.10Å | |
| N1' | H18 | sing | 1.01Å | 1.00Å | |
| O7' | H20 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | C4' | C39 | 112.7° | 109.2° |
| C4' | C5' | C6' | 114.1° | 109.3° |
| C5' | C4' | H12 | 108.7° | 109.5° |
| C5' | C4' | H13 | 108.7° | 109.5° |
| C4' | C5' | H14 | 108.3° | 109.5° |
| C4' | C5' | H15 | 108.3° | 109.5° |
| C4' | C39 | O7' | 109.0° | 109.5° |
| C4' | C39 | C2' | 110.1° | 109.2° |
| C4' | C39 | H11 | 109.1° | 109.5° |
| C39 | C4' | H12 | 108.7° | 109.5° |
| C39 | C4' | H13 | 108.7° | 109.5° |
| C5' | C6' | N1' | 116.2° | 109.5° |
| C6' | C5' | H14 | 108.3° | 109.5° |
| C6' | C5' | H15 | 108.3° | 109.5° |
| C5' | C6' | H16 | 107.8° | 109.5° |
| C5' | C6' | H17 | 107.7° | 109.4° |
| O7' | C39 | C2' | 109.2° | 109.5° |
| O7' | C39 | H11 | 110.6° | 109.6° |
| C39 | O7' | H20 | 109.5° | 114.0° |
| C39 | C2' | N1' | 108.4° | 109.5° |
| C39 | C2' | C3' | 110.9° | 109.4° |
| C39 | C2' | H8 | 108.4° | 109.5° |
| C2' | C39 | H11 | 108.9° | 109.5° |
| C6' | N1' | C2' | 109.1° | 111.2° |
| N1' | C6' | H16 | 107.7° | 109.5° |
| N1' | C6' | H17 | 107.8° | 109.5° |
| C6' | N1' | H18 | 109.6° | 111.0° |
| N1' | C2' | C3' | 111.3° | 109.4° |
| N1' | C2' | H8 | 109.5° | 109.5° |
| C2' | N1' | H18 | 109.6° | 111.0° |
| C2' | C3' | C21 | 114.1° | 109.4° |
| C3' | C2' | H8 | 108.4° | 109.5° |
| C2' | C3' | H9 | 108.3° | 109.5° |
| C2' | C3' | H10 | 108.3° | 109.5° |
| C3' | C21 | O4' | 121.0° | 120.0° |
| C3' | C21 | C1' | 119.0° | 120.0° |
| C21 | C3' | H9 | 108.3° | 109.5° |
| C21 | C3' | H10 | 108.3° | 109.5° |
| O4' | C21 | C1' | 120.0° | 120.0° |
| C21 | C1' | N3 | 110.7° | 109.5° |
| C21 | C1' | H6 | 109.2° | 109.5° |
| C21 | C1' | H7 | 109.2° | 109.5° |
| C1' | N3 | C2 | 119.5° | 119.7° |
| C1' | N3 | C4 | 119.9° | 119.7° |
| N3 | C1' | H6 | 109.1° | 109.5° |
| N3 | C1' | H7 | 109.2° | 109.5° |
| C2 | N3 | C4 | 119.4° | 120.6° |
| N3 | C2 | N1 | 120.6° | 123.4° |
| N3 | C2 | H1 | 119.7° | 118.4° |
| N3 | C4 | O11 | 119.9° | 121.3° |
| N3 | C4 | C10 | 120.6° | 117.4° |
| O11 | C4 | C10 | 119.5° | 121.3° |
| C2 | N1 | C9 | 127.9° | 121.6° |
| N1 | C2 | H1 | 119.7° | 118.3° |
| C4 | C10 | C9 | 116.1° | 118.0° |
| C4 | C10 | C5 | 121.3° | 122.0° |
| N1 | C9 | C10 | 114.0° | 119.1° |
| N1 | C9 | C8 | 122.4° | 121.6° |
| C9 | C10 | C5 | 122.5° | 120.1° |
| C10 | C9 | C8 | 123.7° | 119.3° |
| C10 | C5 | C6 | 96.9° | 119.5° |
| C10 | C5 | H2 | 131.5° | 120.2° |
| C9 | C8 | C7 | 103.0° | 119.7° |
| C9 | C8 | H5 | 128.5° | 120.1° |
| C5 | C6 | C7 | 136.9° | 120.6° |
| C6 | C5 | H2 | 131.5° | 120.3° |
| C5 | C6 | H3 | 111.6° | 119.7° |
| C8 | C7 | C6 | 137.0° | 120.8° |
| C8 | C7 | H4 | 111.5° | 119.6° |
| C7 | C8 | H5 | 128.5° | 120.2° |
| C7 | C6 | H3 | 111.6° | 119.7° |
| C6 | C7 | H4 | 111.5° | 119.6° |
| H6 | C1' | H7 | 109.5° | 109.4° |
| H9 | C3' | H10 | 109.5° | 109.5° |
| H12 | C4' | H13 | 109.5° | 109.6° |
| H14 | C5' | H15 | 109.5° | 109.5° |
| H16 | C6' | H17 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C5' | C4' | C39 | H12 | 120.5° | 119.9° |
| C5' | C4' | C39 | H13 | 120.5° | 119.9° |
| C4' | C5' | C6' | H14 | 120.7° | 120.0° |
| C4' | C5' | C6' | H15 | 120.7° | 120.0° |
| C5' | C4' | C39 | O7' | 167.0° | 177.6° |
| C5' | C4' | C39 | C2' | 47.3° | 57.7° |
| C4' | C5' | C6' | N1' | 38.4° | 59.1° |
| C5' | C4' | C39 | H11 | 72.1° | 62.2° |
| C5' | C4' | H12 | H13 | 118.5° | 120.1° |
| C4' | C5' | H14 | H15 | 117.9° | 120.1° |
| C4' | C5' | C6' | H16 | 159.4° | 179.2° |
| C4' | C5' | C6' | H17 | 82.5° | 60.8° |
| C39 | C4' | C5' | C6' | 34.1° | 57.7° |
| C4' | C39 | O7' | C2' | 120.2° | 119.7° |
| C4' | C39 | O7' | H11 | 119.9° | 120.2° |
| C4' | C39 | C2' | H11 | 119.6° | 119.9° |
| C4' | C39 | C2' | N1' | 64.9° | 59.2° |
| C4' | C39 | C2' | C3' | 172.7° | 179.2° |
| C4' | C39 | C2' | H8 | 53.8° | 60.9° |
| C39 | C4' | H12 | H13 | 118.5° | 120.2° |
| C39 | C4' | C5' | H14 | 86.6° | 62.3° |
| C39 | C4' | C5' | H15 | 154.7° | 177.6° |
| C4' | C39 | O7' | H20 | 180.0° | 60.3° |
| C5' | C6' | N1' | H16 | 121.0° | 120.1° |
| C5' | C6' | N1' | H17 | 120.9° | 119.9° |
| C5' | C6' | N1' | C2' | 55.3° | 61.7° |
| C6' | C5' | C4' | H12 | 86.4° | 177.6° |
| C6' | C5' | C4' | H13 | 154.6° | 62.3° |
| C6' | C5' | H14 | H15 | 117.9° | 120.1° |
| C5' | C6' | H16 | H17 | 116.9° | 119.9° |
| C5' | C6' | N1' | H18 | 64.7° | 62.4° |
| O7' | C39 | C2' | H11 | 120.9° | 120.2° |
| O7' | C39 | C2' | N1' | 175.6° | 179.2° |
| O7' | C39 | C2' | C3' | 53.1° | 60.9° |
| O7' | C39 | C2' | H8 | 65.7° | 59.1° |
| O7' | C39 | C4' | H12 | 46.5° | 62.5° |
| O7' | C39 | C4' | H13 | 72.5° | 57.7° |
| C39 | C2' | N1' | C6' | 67.8° | 61.8° |
| C39 | C2' | N1' | C3' | 122.2° | 120.0° |
| C39 | C2' | N1' | H8 | 118.0° | 120.0° |
| C39 | C2' | C3' | H8 | 118.9° | 119.9° |
| C39 | C2' | C3' | C21 | 70.3° | 174.9° |
| C39 | C2' | C3' | H9 | 169.0° | 54.9° |
| C39 | C2' | C3' | H10 | 50.4° | 65.1° |
| C2' | C39 | C4' | H12 | 73.2° | 177.6° |
| C2' | C39 | C4' | H13 | 167.8° | 62.2° |
| C39 | C2' | N1' | H18 | 52.1° | 62.3° |
| C2' | C39 | O7' | H20 | 59.7° | 180.0° |
| C6' | N1' | C2' | H18 | 120.0° | 124.1° |
| C6' | N1' | C2' | C3' | 169.9° | 178.3° |
| C6' | N1' | C2' | H8 | 50.2° | 58.3° |
| N1' | C6' | C5' | H14 | 82.2° | 60.8° |
| N1' | C6' | C5' | H15 | 159.1° | 179.1° |
| N1' | C6' | H16 | H17 | 116.9° | 120.0° |
| N1' | C2' | C3' | H8 | 120.4° | 120.0° |
| N1' | C2' | C3' | C21 | 50.4° | 65.0° |
| N1' | C2' | C3' | H9 | 70.2° | 175.0° |
| N1' | C2' | C3' | H10 | 171.1° | 55.0° |
| N1' | C2' | C39 | H11 | 54.7° | 60.7° |
| C2' | N1' | C6' | H16 | 176.3° | 178.2° |
| C2' | N1' | C6' | H17 | 65.7° | 58.2° |
| C2' | C3' | C21 | H9 | 120.7° | 120.0° |
| C2' | C3' | C21 | H10 | 120.7° | 120.0° |
| C2' | C3' | C21 | O4' | 25.9° | 0.0° |
| C2' | C3' | C21 | C1' | 154.0° | 180.0° |
| C2' | C3' | H9 | H10 | 117.9° | 120.0° |
| C3' | C2' | C39 | H11 | 67.7° | 59.3° |
| C3' | C2' | N1' | H18 | 70.1° | 57.6° |
| C3' | C21 | O4' | C1' | 179.9° | 180.0° |
| C3' | C21 | C1' | N3 | 155.1° | 180.0° |
| C3' | C21 | C1' | H6 | 35.0° | 60.0° |
| C3' | C21 | C1' | H7 | 84.6° | 59.9° |
| C21 | C3' | C2' | H8 | 170.8° | 55.0° |
| C21 | C3' | H9 | H10 | 117.9° | 120.0° |
| O4' | C21 | C1' | N3 | 25.0° | 0.0° |
| O4' | C21 | C1' | H6 | 145.1° | 120.0° |
| O4' | C21 | C1' | H7 | 95.2° | 120.0° |
| O4' | C21 | C3' | H9 | 94.8° | 120.0° |
| O4' | C21 | C3' | H10 | 146.5° | 120.0° |
| C21 | C1' | N3 | H6 | 120.2° | 120.0° |
| C21 | C1' | N3 | H7 | 120.2° | 120.1° |
| C21 | C1' | N3 | C2 | 123.1° | 90.0° |
| C21 | C1' | N3 | C4 | 69.6° | 90.0° |
| C21 | C1' | H6 | H7 | 119.4° | 120.0° |
| C1' | C21 | C3' | H9 | 85.3° | 60.0° |
| C1' | C21 | C3' | H10 | 33.3° | 60.0° |
| C1' | N3 | C2 | C4 | 167.4° | 180.0° |
| C1' | N3 | C4 | O11 | 0.4° | 0.0° |
| C1' | N3 | C2 | N1 | 178.2° | 180.0° |
| C1' | N3 | C4 | C10 | 179.9° | 180.0° |
| C1' | N3 | C2 | H1 | 1.8° | 0.0° |
| N3 | C1' | H6 | H7 | 119.4° | 120.0° |
| C2 | N3 | C4 | O11 | 167.7° | 180.0° |
| N3 | C2 | N1 | H1 | 180.0° | 180.0° |
| C2 | N3 | C4 | C10 | 12.7° | 0.0° |
| N3 | C2 | N1 | C9 | 9.1° | 0.0° |
| C2 | N3 | C1' | H6 | 116.7° | 30.0° |
| C2 | N3 | C1' | H7 | 2.9° | 149.9° |
| N3 | C4 | O11 | C10 | 179.6° | 180.0° |
| C4 | N3 | C2 | N1 | 14.5° | 0.0° |
| N3 | C4 | C10 | C9 | 5.6° | 0.0° |
| N3 | C4 | C10 | C5 | 174.3° | 180.0° |
| C4 | N3 | C2 | H1 | 165.6° | 180.0° |
| C4 | N3 | C1' | H6 | 50.6° | 150.0° |
| C4 | N3 | C1' | H7 | 170.2° | 30.0° |
| O11 | C4 | C10 | C9 | 174.9° | 180.0° |
| O11 | C4 | C10 | C5 | 5.3° | 0.0° |
| C2 | N1 | C9 | C10 | 1.7° | 0.0° |
| C2 | N1 | C9 | C8 | 178.3° | 180.0° |
| C4 | C10 | C9 | N1 | 0.1° | 0.1° |
| C4 | C10 | C9 | C5 | 179.9° | 180.0° |
| C4 | C10 | C9 | C8 | 179.9° | 180.0° |
| C4 | C10 | C5 | C6 | 179.9° | 179.9° |
| C4 | C10 | C5 | H2 | 0.1° | 0.0° |
| N1 | C9 | C10 | C8 | 180.0° | 179.9° |
| N1 | C9 | C10 | C5 | 180.0° | 180.0° |
| N1 | C9 | C8 | C7 | 179.9° | 180.0° |
| C9 | N1 | C2 | H1 | 170.9° | 180.0° |
| N1 | C9 | C8 | H5 | 0.1° | 0.0° |
| C9 | C10 | C5 | C6 | 0.0° | 0.0° |
| C10 | C9 | C8 | C7 | 0.0° | 0.1° |
| C9 | C10 | C5 | H2 | 180.0° | 179.9° |
| C10 | C9 | C8 | H5 | 179.9° | 179.9° |
| C5 | C10 | C9 | C8 | 0.0° | 0.0° |
| C10 | C5 | C6 | H2 | 180.0° | 179.9° |
| C10 | C5 | C6 | C7 | 0.1° | 0.0° |
| C10 | C5 | C6 | H3 | 179.9° | 179.9° |
| C9 | C8 | C7 | H5 | 180.0° | 180.0° |
| C9 | C8 | C7 | C6 | 0.0° | 0.0° |
| C9 | C8 | C7 | H4 | 180.0° | 180.0° |
| C5 | C6 | C7 | C8 | 0.0° | 0.0° |
| C5 | C6 | C7 | H3 | 180.0° | 179.9° |
| C5 | C6 | C7 | H4 | 179.9° | 179.9° |
| C8 | C7 | C6 | H4 | 180.0° | 179.9° |
| C8 | C7 | C6 | H3 | 179.9° | 179.9° |
| C7 | C6 | C5 | H2 | 179.9° | 180.0° |
| C6 | C7 | C8 | H5 | 180.0° | 180.0° |
| H2 | C5 | C6 | H3 | 0.1° | 0.1° |
| H3 | C6 | C7 | H4 | 0.1° | 0.0° |
| H4 | C7 | C8 | H5 | 0.0° | 0.1° |
| H8 | C2' | C3' | H9 | 50.2° | 65.0° |
| H8 | C2' | C3' | H10 | 68.5° | 175.0° |
| H8 | C2' | C39 | H11 | 173.4° | 179.2° |
| H8 | C2' | N1' | H18 | 170.1° | 177.6° |
| H11 | C39 | C4' | H12 | 167.4° | 57.7° |
| H11 | C39 | C4' | H13 | 48.4° | 177.9° |
| H11 | C39 | O7' | H20 | 60.1° | 59.9° |
| H12 | C4' | C5' | H14 | 152.9° | 57.6° |
| H12 | C4' | C5' | H15 | 34.3° | 62.4° |
| H13 | C4' | C5' | H14 | 33.9° | 177.8° |
| H13 | C4' | C5' | H15 | 84.8° | 57.7° |
| H14 | C5' | C6' | H16 | 38.7° | 59.3° |
| H14 | C5' | C6' | H17 | 156.8° | 179.2° |
| H15 | C5' | C6' | H16 | 79.9° | 60.8° |
| H15 | C5' | C6' | H17 | 38.1° | 59.2° |
| H16 | C6' | N1' | H18 | 56.3° | 57.7° |
| H17 | C6' | N1' | H18 | 174.4° | 177.7° |
