9QV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| N3 | C2 | sing | 1.35Å | 1.37Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| C2 | N1 | sing | 1.35Å | 1.37Å | |
| O4 | C4 | doub | 1.22Å | 1.24Å | |
| C4 | C5 | sing | 1.42Å | 1.43Å | |
| N1 | C1' | sing | 1.47Å | 1.46Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| C1' | O4' | sing | 1.44Å | 1.40Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| O1P | P1 | doub | 1.48Å | 1.51Å | |
| O4' | C4' | sing | 1.44Å | 1.44Å | |
| C5 | C6 | doub | 1.35Å | 1.33Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| O2' | P1 | sing | 1.61Å | 1.59Å | |
| O2P | P1 | sing | 1.61Å | 1.52Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| P1 | O3P | sing | 1.61Å | 1.50Å | |
| C4' | C3' | sing | 1.54Å | 1.51Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| OP2 | P | sing | 1.61Å | 1.48Å | |
| O5' | P | sing | 1.61Å | 1.57Å | |
| OP1 | P | doub | 1.48Å | 1.49Å | |
| C5' | H1 | sing | 1.09Å | 1.10Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| C4' | H3 | sing | 1.09Å | 1.10Å | |
| C1' | H4 | sing | 1.09Å | 1.10Å | |
| C6 | H5 | sing | 1.08Å | 1.08Å | |
| C5 | H6 | sing | 1.08Å | 1.08Å | |
| N3 | H7 | sing | 0.97Å | 1.00Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| O3P | H9 | sing | 0.97Å | 0.95Å | |
| O2P | H10 | sing | 0.97Å | 0.95Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| O3' | H12 | sing | 0.97Å | 0.95Å | |
| OP2 | H14 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.62Å | |
| OP3 | H16 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 123.9° | 119.5° |
| O2 | C2 | N1 | 122.6° | 119.5° |
| C2 | N3 | C4 | 126.4° | 120.3° |
| N3 | C2 | N1 | 113.5° | 120.9° |
| C2 | N3 | H7 | 116.8° | 119.9° |
| N3 | C4 | O4 | 119.9° | 120.3° |
| N3 | C4 | C5 | 115.3° | 119.4° |
| C4 | N3 | H7 | 116.8° | 119.8° |
| C2 | N1 | C1' | 116.2° | 119.7° |
| C2 | N1 | C6 | 124.2° | 120.6° |
| O4 | C4 | C5 | 124.8° | 120.3° |
| C4 | C5 | C6 | 119.9° | 119.1° |
| C4 | C5 | H6 | 120.0° | 120.4° |
| C1' | N1 | C6 | 119.6° | 119.7° |
| N1 | C1' | O4' | 106.3° | 110.3° |
| N1 | C1' | C2' | 111.1° | 110.4° |
| N1 | C1' | H4 | 110.6° | 110.4° |
| N1 | C6 | C5 | 120.8° | 119.7° |
| N1 | C6 | H5 | 119.6° | 120.2° |
| O4' | C1' | C2' | 107.6° | 104.8° |
| C1' | O4' | C4' | 109.5° | 105.2° |
| O4' | C1' | H4 | 111.5° | 110.4° |
| C1' | C2' | O2' | 108.8° | 110.5° |
| C1' | C2' | C3' | 100.9° | 104.0° |
| C2' | C1' | H4 | 109.6° | 110.4° |
| C1' | C2' | H8 | 111.8° | 110.6° |
| O1P | P1 | O2' | 118.6° | 109.5° |
| O1P | P1 | O2P | 100.5° | 109.5° |
| O1P | P1 | O3P | 96.4° | 109.5° |
| O4' | C4' | C3' | 104.1° | 104.8° |
| O4' | C4' | C5' | 110.0° | 110.3° |
| O4' | C4' | H3 | 109.3° | 110.5° |
| C5 | C6 | H5 | 119.6° | 120.1° |
| C6 | C5 | H6 | 120.1° | 120.5° |
| C2' | O2' | P1 | 120.3° | 123.0° |
| O2' | C2' | C3' | 108.7° | 110.5° |
| O2' | C2' | H8 | 113.7° | 110.6° |
| O2' | P1 | O2P | 118.8° | 109.5° |
| O2' | P1 | O3P | 118.4° | 109.5° |
| O2P | P1 | O3P | 100.0° | 109.5° |
| P1 | O2P | H10 | 109.5° | 114.0° |
| C2' | C3' | C4' | 102.0° | 104.1° |
| C2' | C3' | O3' | 112.2° | 110.5° |
| C3' | C2' | H8 | 112.2° | 110.5° |
| C2' | C3' | H11 | 109.7° | 110.5° |
| P1 | O3P | H9 | 109.5° | 113.9° |
| C3' | C4' | C5' | 116.3° | 110.4° |
| C4' | C3' | O3' | 111.9° | 110.5° |
| C3' | C4' | H3 | 108.4° | 110.4° |
| C4' | C3' | H11 | 109.6° | 110.5° |
| C4' | C5' | O5' | 110.3° | 109.5° |
| C4' | C5' | H1 | 109.2° | 109.5° |
| C4' | C5' | H2 | 109.3° | 109.5° |
| C5' | C4' | H3 | 108.6° | 110.3° |
| O3' | C3' | H11 | 111.1° | 110.5° |
| C3' | O3' | H12 | 109.5° | 114.0° |
| C5' | O5' | P | 119.7° | 123.0° |
| O5' | C5' | H1 | 109.2° | 109.5° |
| O5' | C5' | H2 | 109.3° | 109.4° |
| OP2 | P | O5' | 102.7° | 109.5° |
| OP2 | P | OP1 | 125.5° | 109.5° |
| P | OP2 | H14 | 109.5° | 114.0° |
| OP2 | P | OP3 | 108.0° | 109.5° |
| O5' | P | OP1 | 101.6° | 109.5° |
| O5' | P | OP3 | 105.3° | 109.5° |
| OP1 | P | OP3 | 111.5° | 109.4° |
| H1 | C5' | H2 | 109.5° | 109.5° |
| P | OP3 | H16 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.1° | 179.6° |
| O2 | C2 | N3 | C4 | 179.3° | 179.9° |
| O2 | C2 | N1 | C1' | 0.9° | 0.2° |
| O2 | C2 | N1 | C6 | 179.2° | 180.0° |
| O2 | C2 | N3 | H7 | 0.6° | 0.5° |
| C2 | N3 | C4 | H7 | 180.0° | 179.4° |
| C2 | N3 | C4 | O4 | 180.0° | 179.7° |
| C2 | N3 | C4 | C5 | 0.4° | 0.3° |
| N3 | C2 | N1 | C1' | 180.0° | 179.7° |
| N3 | C2 | N1 | C6 | 0.0° | 0.5° |
| C4 | N3 | C2 | N1 | 0.2° | 0.5° |
| N3 | C4 | O4 | C5 | 179.5° | 179.9° |
| N3 | C4 | C5 | C6 | 0.4° | 0.1° |
| N3 | C4 | C5 | H6 | 179.6° | 179.9° |
| C2 | N1 | C1' | C6 | 180.0° | 179.8° |
| C2 | N1 | C1' | O4' | 92.2° | 53.3° |
| C2 | N1 | C1' | C2' | 151.0° | 62.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.2° |
| C2 | N1 | C1' | H4 | 29.0° | 175.6° |
| C2 | N1 | C6 | H5 | 179.9° | 179.8° |
| N1 | C2 | N3 | H7 | 179.7° | 179.9° |
| O4 | C4 | C5 | C6 | 180.0° | 180.0° |
| O4 | C4 | C5 | H6 | 0.0° | 0.0° |
| O4 | C4 | N3 | H7 | 0.0° | 0.4° |
| C4 | C5 | C6 | N1 | 0.3° | 0.0° |
| C4 | C5 | C6 | H6 | 180.0° | 180.0° |
| C4 | C5 | C6 | H5 | 179.7° | 180.0° |
| C5 | C4 | N3 | H7 | 179.6° | 179.7° |
| N1 | C1' | O4' | C2' | 119.1° | 118.8° |
| N1 | C1' | O4' | H4 | 120.6° | 122.3° |
| N1 | C1' | C2' | H4 | 122.6° | 122.3° |
| N1 | C1' | O4' | C4' | 116.3° | 159.4° |
| C1' | N1 | C6 | C5 | 179.9° | 180.0° |
| N1 | C1' | C2' | O2' | 155.8° | 98.6° |
| N1 | C1' | C2' | C3' | 90.0° | 142.8° |
| C1' | N1 | C6 | H5 | 0.1° | 0.0° |
| N1 | C1' | C2' | H8 | 29.4° | 24.1° |
| C6 | N1 | C1' | O4' | 87.8° | 126.5° |
| C6 | N1 | C1' | C2' | 29.0° | 118.1° |
| N1 | C6 | C5 | H5 | 180.0° | 179.9° |
| C6 | N1 | C1' | H4 | 151.0° | 4.2° |
| N1 | C6 | C5 | H6 | 179.7° | 180.0° |
| O4' | C1' | C2' | H4 | 121.5° | 118.9° |
| O4' | C1' | C2' | O2' | 88.2° | 142.6° |
| O4' | C1' | C2' | C3' | 26.0° | 24.0° |
| C1' | O4' | C4' | C3' | 21.8° | 40.5° |
| C1' | O4' | C4' | C5' | 147.1° | 159.4° |
| C1' | O4' | C4' | H3 | 93.8° | 78.4° |
| O4' | C1' | C2' | H8 | 145.4° | 94.6° |
| C2' | C1' | O4' | C4' | 2.7° | 40.5° |
| C1' | C2' | O2' | C3' | 109.0° | 114.6° |
| C1' | C2' | O2' | H8 | 125.3° | 122.7° |
| C1' | C2' | O2' | P1 | 143.6° | 120.0° |
| C1' | C2' | C3' | H8 | 119.2° | 118.7° |
| C1' | C2' | C3' | C4' | 37.8° | 0.0° |
| C1' | C2' | C3' | O3' | 157.8° | 118.6° |
| C1' | C2' | C3' | H11 | 78.3° | 118.7° |
| O1P | P1 | O2' | C2' | 61.9° | 55.0° |
| O1P | P1 | O2' | O2P | 122.5° | 120.0° |
| O1P | P1 | O2' | O3P | 116.0° | 120.0° |
| O1P | P1 | O2P | O3P | 98.5° | 120.0° |
| O1P | P1 | O3P | H9 | 0.0° | 60.0° |
| O1P | P1 | O2P | H10 | 0.0° | 180.0° |
| O4' | C4' | C3' | C2' | 37.5° | 24.0° |
| O4' | C4' | C3' | C5' | 121.1° | 118.8° |
| O4' | C4' | C3' | H3 | 116.3° | 119.0° |
| O4' | C4' | C5' | H3 | 119.6° | 122.3° |
| O4' | C4' | C3' | O3' | 157.7° | 142.6° |
| O4' | C4' | C5' | O5' | 150.5° | 69.6° |
| O4' | C4' | C5' | H1 | 89.4° | 50.4° |
| O4' | C4' | C5' | H2 | 30.3° | 170.4° |
| C4' | O4' | C1' | H4 | 123.0° | 78.3° |
| O4' | C4' | C3' | H11 | 78.6° | 94.7° |
| C2' | O2' | P1 | O2P | 175.6° | 65.0° |
| O2' | C2' | C3' | H8 | 126.5° | 122.7° |
| C2' | O2' | P1 | O3P | 54.1° | 175.0° |
| O2' | C2' | C3' | C4' | 76.5° | 118.6° |
| O2' | C2' | C3' | O3' | 43.5° | 0.0° |
| O2' | C2' | C1' | H4 | 33.2° | 23.7° |
| O2' | C2' | C3' | H11 | 167.4° | 122.7° |
| O2' | P1 | O2P | O3P | 130.4° | 120.0° |
| P1 | O2' | C2' | C3' | 107.4° | 125.4° |
| P1 | O2' | C2' | H8 | 18.3° | 2.7° |
| O2' | P1 | O3P | H9 | 127.4° | 180.0° |
| O2' | P1 | O2P | H10 | 131.1° | 60.0° |
| O2P | P1 | O3P | H9 | 101.9° | 60.1° |
| C2' | C3' | C4' | O3' | 120.2° | 118.6° |
| C2' | C3' | C4' | H11 | 116.2° | 118.7° |
| C2' | C3' | C4' | C5' | 158.7° | 142.8° |
| C2' | C3' | O3' | H11 | 123.1° | 122.7° |
| C2' | C3' | C4' | H3 | 78.7° | 95.0° |
| C3' | C2' | C1' | H4 | 147.4° | 94.9° |
| C2' | C3' | O3' | H12 | 180.0° | 176.1° |
| O3P | P1 | O2P | H10 | 98.4° | 60.0° |
| C3' | C4' | C5' | H3 | 122.5° | 122.3° |
| C4' | C3' | O3' | H11 | 122.8° | 122.7° |
| C3' | C4' | C5' | O5' | 91.6° | 175.0° |
| C3' | C4' | C5' | H1 | 28.5° | 65.0° |
| C3' | C4' | C5' | H2 | 148.3° | 55.0° |
| C4' | C3' | C2' | H8 | 157.0° | 118.7° |
| C4' | C3' | O3' | H12 | 66.0° | 61.4° |
| C5' | C4' | C3' | O3' | 81.2° | 98.6° |
| C4' | C5' | O5' | H1 | 120.1° | 120.0° |
| C4' | C5' | O5' | H2 | 120.1° | 120.0° |
| C4' | C5' | O5' | P | 149.3° | 180.0° |
| C4' | C5' | H1 | H2 | 119.6° | 120.0° |
| C5' | C4' | C3' | H11 | 42.5° | 24.1° |
| O3' | C3' | C4' | H3 | 41.4° | 23.7° |
| O3' | C3' | C2' | H8 | 83.1° | 122.7° |
| C5' | O5' | P | OP2 | 100.0° | 65.0° |
| C5' | O5' | P | OP1 | 30.7° | 55.0° |
| O5' | C5' | H1 | H2 | 119.6° | 119.9° |
| O5' | C5' | C4' | H3 | 30.9° | 52.7° |
| C5' | O5' | P | OP3 | 147.1° | 175.0° |
| OP2 | P | O5' | OP1 | 130.8° | 120.0° |
| OP2 | P | O5' | OP3 | 112.9° | 120.0° |
| OP2 | P | OP1 | OP3 | 133.4° | 120.0° |
| OP2 | P | OP3 | H16 | 141.5° | 60.0° |
| O5' | P | OP1 | OP3 | 111.7° | 120.0° |
| P | O5' | C5' | H1 | 90.6° | 60.0° |
| P | O5' | C5' | H2 | 29.2° | 60.0° |
| O5' | P | OP2 | H14 | 114.4° | 60.0° |
| O5' | P | OP3 | H16 | 109.4° | 179.9° |
| OP1 | P | OP2 | H14 | 0.0° | 180.0° |
| OP1 | P | OP3 | H16 | 0.0° | 60.1° |
| H1 | C5' | C4' | H3 | 151.0° | 172.7° |
| H2 | C5' | C4' | H3 | 89.2° | 67.3° |
| H3 | C4' | C3' | H11 | 165.1° | 146.4° |
| H4 | C1' | C2' | H8 | 93.2° | 146.5° |
| H5 | C6 | C5 | H6 | 0.3° | 0.1° |
| H8 | C2' | C3' | H11 | 40.9° | 0.0° |
| H11 | C3' | O3' | H12 | 56.8° | 61.2° |
| H14 | OP2 | P | OP3 | 134.7° | 60.0° |
