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Summary Geometry Related PDB entries

9ON

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O12	C7	doub	1.21Å	1.25Å
C4	C7	sing	1.51Å	1.50Å
C4	C5	sing	1.53Å	1.53Å
C4	C3	sing	1.53Å	1.53Å
C7	O10	sing	1.34Å	1.25Å
C2	C3	sing	1.53Å	1.53Å
C2	C1	sing	1.51Å	1.51Å
O9	C1	doub	1.21Å	1.25Å
C1	O8	sing	1.34Å	1.25Å
O10	H1	sing	0.97Å	0.95Å
C4	H2	sing	1.09Å	1.10Å
C5	H3	sing	1.09Å	1.10Å
C5	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
C2	H8	sing	1.09Å	1.10Å
C2	H9	sing	1.09Å	1.10Å
O8	H10	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O12	C7	C4	117.6°	120.0°
O12	C7	O10	123.6°	120.0°
C7	C4	C5	109.5°	109.5°
C7	C4	C3	108.0°	109.4°
C4	C7	O10	118.8°	120.0°
C7	C4	H2	109.2°	109.5°
C5	C4	C3	112.6°	109.5°
C5	C4	H2	108.8°	109.5°
C4	C5	H3	109.5°	109.4°
C4	C5	H4	109.5°	109.4°
C4	C5	H5	109.5°	109.4°
C4	C3	C2	111.5°	109.4°
C3	C4	H2	108.7°	109.5°
C4	C3	H6	109.0°	109.5°
C4	C3	H7	108.9°	109.5°
C7	O10	H1	109.5°	117.0°
C3	C2	C1	111.3°	109.5°
C2	C3	H6	109.0°	109.5°
C2	C3	H7	108.9°	109.5°
C3	C2	H8	109.0°	109.5°
C3	C2	H9	109.0°	109.5°
C2	C1	O9	119.6°	120.0°
C2	C1	O8	118.1°	120.0°
C1	C2	H8	109.0°	109.5°
C1	C2	H9	109.1°	109.5°
O9	C1	O8	122.3°	120.0°
C1	O8	H10	109.5°	117.0°
H3	C5	H4	109.5°	109.5°
H3	C5	H5	109.4°	109.5°
H4	C5	H5	109.4°	109.5°
H6	C3	H7	109.5°	109.5°
H8	C2	H9	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O12	C7	C4	O10	179.2°	179.7°
O12	C7	C4	C5	123.8°	120.0°
O12	C7	C4	C3	113.3°	0.0°
O12	C7	O10	H1	0.0°	0.0°
O12	C7	C4	H2	4.7°	120.0°
C7	C4	C5	C3	120.1°	120.0°
C7	C4	C5	H2	119.3°	120.0°
C7	C4	C3	H2	118.4°	120.0°
C7	C4	C3	C2	71.6°	175.0°
C4	C7	O10	H1	179.2°	179.7°
C7	C4	C5	H3	180.0°	180.0°
C7	C4	C5	H4	60.0°	60.0°
C7	C4	C5	H5	60.0°	60.0°
C7	C4	C3	H6	168.1°	65.0°
C7	C4	C3	H7	48.7°	55.0°
C5	C4	C3	H2	120.6°	120.0°
C5	C4	C7	O10	57.0°	59.7°
C5	C4	C3	C2	167.4°	65.0°
C4	C5	H3	H4	120.0°	120.0°
C4	C5	H3	H5	120.0°	120.0°
C4	C5	H4	H5	120.0°	119.9°
C5	C4	C3	H6	47.0°	55.0°
C5	C4	C3	H7	72.3°	175.0°
C3	C4	C7	O10	65.9°	179.7°
C4	C3	C2	H6	120.3°	120.0°
C4	C3	C2	H7	120.3°	120.0°
C4	C3	C2	C1	154.9°	180.0°
C3	C4	C5	H3	59.9°	60.0°
C3	C4	C5	H4	179.9°	179.9°
C3	C4	C5	H5	60.1°	60.0°
C4	C3	H6	H7	119.0°	120.0°
C4	C3	C2	H8	84.8°	60.0°
C4	C3	C2	H9	34.6°	60.0°
O10	C7	C4	H2	176.1°	60.3°
C3	C2	C1	H8	120.3°	120.0°
C3	C2	C1	H9	120.3°	120.0°
C3	C2	C1	O9	94.8°	0.1°
C3	C2	C1	O8	86.0°	180.0°
C2	C3	C4	H2	46.8°	55.0°
C2	C3	H6	H7	119.1°	120.0°
C3	C2	H8	H9	119.1°	120.0°
C2	C1	O9	O8	179.2°	179.9°
C1	C2	C3	H6	34.6°	60.0°
C1	C2	C3	H7	84.8°	60.0°
C1	C2	H8	H9	119.2°	120.0°
C2	C1	O8	H10	179.2°	180.0°
O9	C1	C2	H8	144.9°	120.0°
O9	C1	C2	H9	25.5°	120.0°
O9	C1	O8	H10	0.0°	0.1°
O8	C1	C2	H8	34.3°	59.9°
O8	C1	C2	H9	153.8°	60.1°
H2	C4	C5	H3	60.7°	60.0°
H2	C4	C5	H4	59.3°	60.0°
H2	C4	C5	H5	179.3°	180.0°
H2	C4	C3	H6	73.6°	175.0°
H2	C4	C3	H7	167.1°	65.0°
H3	C5	H4	H5	119.9°	120.1°
H6	C3	C2	H8	154.9°	180.0°
H6	C3	C2	H9	85.7°	60.0°
H7	C3	C2	H8	35.5°	60.0°
H7	C3	C2	H9	154.9°	180.0°

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