9O4

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4'	C4'	sing	1.44Å	1.52Å
O4'	C1'	sing	1.44Å	1.48Å
C4'	C3'	sing	1.54Å	1.53Å
C2	N3	doub	1.32Å	1.54Å	Aromatic
C2	N1	sing	1.32Å	1.33Å	Aromatic
N3	C4	sing	1.33Å	1.50Å	Aromatic
N1	C6	doub	1.33Å	1.14Å	Aromatic
P	O2P	doub	1.48Å	1.48Å
P	O1P	sing	1.61Å	1.48Å
P	O3'	sing	1.61Å	1.60Å
C4	C5	doub	1.41Å	1.52Å	Aromatic
C4	N9	sing	1.37Å	1.41Å	Aromatic
C6	C5	sing	1.41Å	1.17Å	Aromatic
C6	N6	sing	1.38Å	1.46Å
C5	N7	sing	1.35Å	1.44Å	Aromatic
C1'	N9	sing	1.46Å	1.44Å
C1'	C2'	sing	1.55Å	1.47Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C2'	sing	1.55Å	1.43Å
N9	C8	sing	1.36Å	1.24Å	Aromatic
N7	C8	doub	1.30Å	1.22Å	Aromatic
P	O3P	sing	1.61Å	1.60Å
C2	H1	sing	1.08Å	1.08Å
C1'	H2	sing	1.09Å	1.10Å
C2'	H3	sing	1.09Å	1.10Å
C2'	H4	sing	1.09Å	1.10Å
C3'	H5	sing	1.09Å	1.10Å
C4'	H6	sing	1.09Å	1.10Å
C4'	H7	sing	1.09Å	1.10Å
C8	H8	sing	1.08Å	1.08Å
N6	H9	sing	0.97Å	1.00Å
N6	H10	sing	0.97Å	1.00Å
O1P	H11	sing	0.97Å	0.95Å
O3P	H12	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4'	O4'	C1'	106.0°	107.0°
O4'	C4'	C3'	104.9°	107.3°
O4'	C4'	H6	110.6°	109.9°
O4'	C4'	H7	110.6°	110.0°
O4'	C1'	N9	109.1°	110.6°
O4'	C1'	C2'	110.5°	103.5°
O4'	C1'	H2	108.7°	110.7°
C4'	C3'	O3'	109.3°	110.5°
C4'	C3'	C2'	109.6°	104.2°
C4'	C3'	H5	109.2°	110.6°
C3'	C4'	H6	110.6°	109.9°
C3'	C4'	H7	110.6°	109.9°
N3	C2	N1	123.4°	122.5°
C2	N3	C4	104.4°	120.6°
N3	C2	H1	118.3°	118.7°
C2	N1	C6	128.4°	121.1°
N1	C2	H1	118.3°	118.7°
N3	C4	C5	116.4°	119.1°
N3	C4	N9	144.4°	134.9°
N1	C6	C5	120.6°	118.5°
N1	C6	N6	119.2°	120.7°
O2P	P	O1P	109.5°	109.5°
O2P	P	O3'	110.1°	109.5°
O2P	P	O3P	106.2°	109.4°
O1P	P	O3'	108.8°	109.5°
O1P	P	O3P	113.0°	109.5°
P	O1P	H11	109.5°	114.0°
P	O3'	C3'	121.3°	123.0°
O3'	P	O3P	109.3°	109.5°
C5	C4	N9	99.2°	106.0°
C4	C5	C6	126.8°	118.1°
C4	C5	N7	101.0°	107.2°
C4	N9	C1'	121.1°	126.3°
C4	N9	C8	115.7°	107.4°
C5	C6	N6	120.2°	120.8°
C6	C5	N7	132.3°	134.7°
C6	N6	H9	109.5°	120.0°
C6	N6	H10	109.5°	120.0°
C5	N7	C8	113.6°	109.5°
N9	C1'	C2'	110.4°	110.6°
C1'	N9	C8	123.2°	126.3°
N9	C1'	H2	109.2°	110.6°
C1'	C2'	C3'	106.6°	102.1°
C2'	C1'	H2	108.9°	110.6°
C1'	C2'	H3	110.2°	110.9°
C1'	C2'	H4	110.2°	110.9°
O3'	C3'	C2'	107.6°	110.5°
O3'	C3'	H5	110.6°	110.4°
C3'	C2'	H3	110.2°	110.9°
C3'	C2'	H4	110.2°	110.9°
C2'	C3'	H5	110.5°	110.5°
N9	C8	N7	110.6°	110.0°
N9	C8	H8	124.7°	125.0°
N7	C8	H8	124.8°	125.0°
P	O3P	H12	109.5°	114.0°
H3	C2'	H4	109.5°	110.8°
H6	C4'	H7	109.5°	109.8°
H9	N6	H10	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4'	C4'	C3'	H6	119.3°	119.5°
O4'	C4'	C3'	H7	119.3°	119.6°
C4'	O4'	C1'	N9	114.7°	158.6°
C4'	O4'	C1'	C2'	6.9°	40.0°
O4'	C4'	C3'	O3'	105.7°	116.6°
O4'	C4'	C3'	C2'	11.9°	2.0°
C4'	O4'	C1'	H2	126.3°	78.5°
O4'	C4'	C3'	H5	133.2°	120.8°
O4'	C4'	H6	H7	122.1°	121.1°
C1'	O4'	C4'	C3'	2.9°	26.5°
O4'	C1'	N9	C4	81.1°	160.9°
O4'	C1'	N9	C2'	121.6°	114.1°
O4'	C1'	N9	H2	118.7°	123.0°
O4'	C1'	C2'	H2	119.3°	118.6°
O4'	C1'	C2'	C3'	14.4°	37.0°
O4'	C1'	N9	C8	98.7°	19.0°
O4'	C1'	C2'	H3	105.1°	155.2°
O4'	C1'	C2'	H4	134.0°	81.2°
C1'	O4'	C4'	H6	122.2°	93.0°
C1'	O4'	C4'	H7	116.4°	146.1°
C4'	C3'	O3'	P	65.1°	125.2°
C4'	C3'	C2'	C1'	16.2°	20.9°
C4'	C3'	O3'	C2'	118.9°	114.8°
C4'	C3'	O3'	H5	120.3°	122.7°
C4'	C3'	C2'	H5	120.4°	118.8°
C4'	C3'	C2'	H3	103.4°	139.1°
C4'	C3'	C2'	H4	135.7°	97.3°
C3'	C4'	H6	H7	122.1°	121.0°
N3	C2	N1	H1	180.0°	179.7°
N3	C2	N1	C6	0.2°	0.0°
C2	N3	C4	C5	0.0°	0.0°
C2	N3	C4	N9	179.9°	180.0°
N1	C2	N3	C4	0.1°	0.0°
C2	N1	C6	C5	0.1°	0.0°
C2	N1	C6	N6	179.9°	180.0°
N3	C4	C5	N9	180.0°	180.0°
N3	C4	C5	C6	0.0°	0.0°
N3	C4	C5	N7	180.0°	180.0°
N3	C4	N9	C1'	0.1°	0.0°
N3	C4	N9	C8	179.9°	180.0°
C4	N3	C2	H1	179.9°	179.7°
N1	C6	C5	C4	0.0°	0.0°
N1	C6	C5	N6	179.9°	180.0°
N1	C6	C5	N7	179.9°	180.0°
C6	N1	C2	H1	179.8°	179.7°
N1	C6	N6	H9	0.0°	180.0°
N1	C6	N6	H10	120.0°	0.0°
O2P	P	O1P	O3'	120.4°	120.0°
O2P	P	O1P	O3P	118.1°	119.9°
O2P	P	O3'	O3P	116.3°	120.0°
O2P	P	O3'	C3'	37.1°	55.0°
O2P	P	O1P	H11	0.0°	180.0°
O2P	P	O3P	H12	0.0°	60.0°
O1P	P	O3'	O3P	123.8°	120.0°
O1P	P	O3'	C3'	157.0°	65.0°
O1P	P	O3P	H12	120.0°	59.9°
P	O3'	C3'	C2'	176.0°	120.0°
P	O3'	C3'	H5	55.2°	2.5°
O3'	P	O1P	H11	120.4°	59.9°
O3'	P	O3P	H12	118.8°	180.0°
C4	C5	C6	N7	179.9°	180.0°
C4	C5	C6	N6	179.9°	180.0°
C5	C4	N9	C1'	179.9°	180.0°
C5	C4	N9	C8	0.1°	0.0°
C4	C5	N7	C8	0.0°	0.0°
N9	C4	C5	C6	180.0°	180.0°
N9	C4	C5	N7	0.0°	0.0°
C4	N9	C1'	C8	179.8°	179.9°
C4	N9	C1'	C2'	157.3°	85.0°
C4	N9	C8	N7	0.1°	0.0°
C4	N9	C1'	H2	37.6°	37.9°
C4	N9	C8	H8	179.9°	180.0°
C6	C5	N7	C8	180.0°	180.0°
C5	C6	N6	H9	179.9°	0.0°
C5	C6	N6	H10	59.9°	180.0°
N6	C6	C5	N7	0.0°	0.0°
C6	N6	H9	H10	120.0°	180.0°
C5	N7	C8	N9	0.0°	0.0°
C5	N7	C8	H8	179.9°	180.0°
N9	C1'	C2'	H2	119.9°	122.9°
N9	C1'	C2'	C3'	106.3°	155.5°
C1'	N9	C8	N7	179.9°	180.0°
N9	C1'	C2'	H3	134.2°	86.3°
N9	C1'	C2'	H4	13.2°	37.3°
C1'	N9	C8	H8	0.1°	0.0°
C1'	C2'	C3'	O3'	102.5°	139.6°
C1'	C2'	C3'	H3	119.5°	118.2°
C1'	C2'	C3'	H4	119.6°	118.2°
C2'	C1'	N9	C8	22.9°	95.0°
C1'	C2'	H3	H4	121.4°	123.6°
C1'	C2'	C3'	H5	136.6°	97.9°
O3'	C3'	C2'	H5	120.9°	122.5°
C3'	O3'	P	O3P	79.2°	175.0°
O3'	C3'	C2'	H3	138.0°	102.3°
O3'	C3'	C2'	H4	17.0°	21.3°
O3'	C3'	C4'	H6	13.6°	123.9°
O3'	C3'	C4'	H7	135.1°	3.0°
C3'	C2'	C1'	H2	133.8°	81.6°
C3'	C2'	H3	H4	121.3°	123.7°
C2'	C3'	C4'	H6	131.2°	117.4°
C2'	C3'	C4'	H7	107.3°	121.7°
N9	C8	N7	H8	180.0°	180.0°
C8	N9	C1'	H2	142.6°	142.1°
O3P	P	O1P	H11	118.1°	60.1°
H2	C1'	C2'	H3	14.2°	36.6°
H2	C1'	C2'	H4	106.7°	160.1°
H3	C2'	C3'	H5	17.1°	20.2°
H4	C2'	C3'	H5	103.9°	143.8°
H5	C3'	C4'	H6	107.6°	1.3°
H5	C3'	C4'	H7	13.9°	119.6°

Release date:	2017-12-06
Definition date:	2017-05-19
Last modified:	2017-12-01
Release status:	REL
Processing site:	RCSB
Derived from:	5VU7