English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

9MG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	N2	sing	1.46Å	1.48Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å
C1	H13	sing	1.09Å	1.11Å
N2	C3	sing	1.36Å	1.38Å	Aromatic
N2	C12	sing	1.37Å	1.40Å	Aromatic
C3	N4	doub	1.30Å	1.32Å	Aromatic
C3	H3	sing	1.08Å	1.10Å
N4	C5	sing	1.36Å	1.40Å	Aromatic
C5	C6	sing	1.40Å	1.42Å	Aromatic
C5	C12	doub	1.41Å	1.43Å	Aromatic
C6	O7	sing	1.35Å	1.37Å
C6	N8	doub	1.33Å	1.38Å	Aromatic
O7	HO7	sing	0.97Å	0.95Å
N8	C9	sing	1.33Å	1.38Å	Aromatic
C9	N10	sing	1.38Å	1.40Å
C9	N11	doub	1.32Å	1.35Å	Aromatic
N10	H101	sing	0.97Å	1.02Å
N10	H102	sing	0.97Å	1.02Å
N11	C12	sing	1.33Å	1.36Å	Aromatic

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N2	C1	H11	127.2°	109.5°
N2	C1	H12	106.0°	109.5°
N2	C1	H13	106.0°	109.5°
C1	N2	C3	127.3°	126.3°
C1	N2	C12	124.9°	126.3°
H11	C1	H12	105.9°	109.4°
H11	C1	H13	106.0°	109.4°
H12	C1	H13	103.4°	109.4°
C3	N2	C12	107.9°	107.4°
N2	C3	N4	110.4°	110.0°
N2	C3	H3	126.5°	125.0°
N2	C12	C5	106.0°	106.0°
N2	C12	N11	133.3°	134.8°
N4	C3	H3	123.1°	125.0°
C3	N4	C5	108.8°	109.4°
N4	C5	C6	135.6°	134.6°
N4	C5	C12	106.9°	107.1°
C6	C5	C12	117.5°	118.3°
C5	C6	O7	120.2°	120.7°
C5	C6	N8	119.0°	118.6°
C5	C12	N11	120.7°	119.1°
O7	C6	N8	120.7°	120.7°
C6	O7	HO7	120.2°	106.8°
C6	N8	C9	121.3°	121.2°
N8	C9	N10	120.2°	118.9°
N8	C9	N11	120.3°	122.2°
N10	C9	N11	119.5°	118.9°
C9	N10	H101	120.2°	120.0°
C9	N10	H102	108.4°	120.0°
C9	N11	C12	121.2°	120.6°
H101	N10	H102	108.3°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N2	C1	H11	H12	125.2°	120.0°
N2	C1	H11	H13	125.3°	120.1°
N2	C1	H12	H13	111.3°	120.0°
C1	N2	C3	C12	180.0°	179.7°
C1	N2	C3	N4	179.7°	180.0°
C1	N2	C3	H3	0.2°	0.1°
C1	N2	C12	C5	179.5°	179.9°
C1	N2	C12	N11	0.1°	0.7°
H11	C1	H12	H13	111.3°	119.9°
H11	C1	N2	C3	179.9°	90.1°
H11	C1	N2	C12	0.0°	90.3°
H12	C1	N2	C3	54.7°	149.9°
H12	C1	N2	C12	125.2°	29.7°
H13	C1	N2	C3	54.7°	30.0°
H13	C1	N2	C12	125.3°	149.7°
N2	C3	N4	H3	179.9°	179.9°
N2	C3	N4	C5	0.0°	0.1°
C3	N2	C12	C5	0.4°	0.4°
C3	N2	C12	N11	180.0°	179.6°
C12	N2	C3	N4	0.3°	0.3°
C12	N2	C3	H3	179.8°	179.8°
N2	C12	C5	N4	0.5°	0.4°
N2	C12	C5	C6	179.4°	179.8°
N2	C12	C5	N11	179.7°	179.3°
N2	C12	N11	C9	180.0°	179.6°
C3	N4	C5	C6	179.5°	180.0°
C3	N4	C5	C12	0.3°	0.2°
H3	C3	N4	C5	179.9°	180.0°
N4	C5	C6	C12	179.8°	179.8°
N4	C5	C6	O7	0.2°	0.0°
N4	C5	C6	N8	179.6°	180.0°
N4	C5	C12	N11	179.9°	179.7°
C5	C6	O7	N8	179.4°	180.0°
C5	C6	O7	HO7	179.9°	90.0°
C5	C6	N8	C9	0.4°	0.0°
C6	C5	C12	N11	0.2°	0.5°
C12	C5	C6	O7	180.0°	179.7°
C12	C5	C6	N8	0.6°	0.2°
C5	C12	N11	C9	0.4°	0.5°
O7	C6	N8	C9	179.7°	179.9°
N8	C6	O7	HO7	0.7°	89.9°
C6	N8	C9	N10	179.6°	180.0°
C6	N8	C9	N11	0.3°	0.1°
N8	C9	N10	N11	179.9°	179.9°
N8	C9	N10	H101	179.9°	0.2°
N8	C9	N10	H102	54.7°	180.0°
N8	C9	N11	C12	0.7°	0.3°
C9	N10	H101	H102	125.2°	179.9°
N10	C9	N11	C12	179.2°	179.8°
N11	C9	N10	H101	0.2°	180.0°
N11	C9	N10	H102	125.4°	0.1°

226707

PDB entries from 2024-10-30

PDB statistics

PDBj update info

Contact PDBj

numon