9L3
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2A | PA | doub | 1.48Å | 1.51Å | |
| O3A | PA | sing | 1.61Å | 1.61Å | |
| PA | O1A | sing | 1.61Å | 1.50Å | |
| PA | O5' | sing | 1.61Å | 1.61Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5A | C5 | sing | 1.51Å | 1.51Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| C5 | C6 | doub | 1.38Å | 1.38Å | Aromatic |
| C5 | C4 | sing | 1.40Å | 1.48Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.34Å | Aromatic |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| N4 | C4 | sing | 1.39Å | 1.35Å | |
| C4 | N3 | doub | 1.33Å | 1.34Å | Aromatic |
| N1 | C1' | sing | 1.46Å | 1.47Å | |
| N1 | C2 | doub | 1.32Å | 1.41Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| C5A | H2 | sing | 1.09Å | 1.10Å | |
| C5A | H3 | sing | 1.09Å | 1.10Å | |
| C5A | H4 | sing | 1.09Å | 1.10Å | |
| C6 | H5 | sing | 1.08Å | 1.08Å | |
| N4 | H6 | sing | 0.97Å | 1.00Å | |
| N4 | H7 | sing | 0.97Å | 1.00Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| C3' | H11 | sing | 1.09Å | 1.10Å | |
| C4' | H12 | sing | 1.09Å | 1.10Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| C5' | H14 | sing | 1.09Å | 1.10Å | |
| C5' | H15 | sing | 1.09Å | 1.10Å | |
| O1A | H16 | sing | 0.97Å | 0.95Å | |
| O3A | H17 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2A | PA | O3A | 108.8° | 109.5° |
| O2A | PA | O1A | 118.4° | 109.4° |
| O2A | PA | O5' | 107.2° | 109.4° |
| O3A | PA | O1A | 110.8° | 109.5° |
| O3A | PA | O5' | 102.8° | 109.5° |
| PA | O3A | H17 | 109.5° | 114.0° |
| O1A | PA | O5' | 107.6° | 109.5° |
| PA | O1A | H16 | 109.5° | 114.0° |
| PA | O5' | C5' | 120.5° | 123.0° |
| O5' | C5' | C4' | 111.0° | 109.5° |
| O5' | C5' | H14 | 109.1° | 109.5° |
| O5' | C5' | H15 | 109.1° | 109.5° |
| C5' | C4' | C3' | 113.1° | 110.6° |
| C5' | C4' | O4' | 111.8° | 110.7° |
| C5' | C4' | H12 | 108.3° | 110.7° |
| C4' | C5' | H14 | 109.1° | 109.5° |
| C4' | C5' | H15 | 109.1° | 109.5° |
| C5A | C5 | C6 | 121.7° | 120.8° |
| C5A | C5 | C4 | 120.7° | 120.9° |
| C5 | C5A | H2 | 109.5° | 109.5° |
| C5 | C5A | H3 | 109.5° | 109.5° |
| C5 | C5A | H4 | 109.5° | 109.4° |
| C3' | C4' | O4' | 105.7° | 103.6° |
| C4' | C3' | C2' | 105.0° | 102.1° |
| C4' | C3' | O3' | 107.5° | 110.9° |
| C4' | C3' | H11 | 111.3° | 110.9° |
| C3' | C4' | H12 | 108.4° | 110.6° |
| C4' | O4' | C1' | 112.0° | 106.9° |
| O4' | C4' | H12 | 109.5° | 110.5° |
| C6 | C5 | C4 | 117.6° | 118.3° |
| C5 | C6 | N1 | 119.9° | 119.2° |
| C5 | C6 | H5 | 120.0° | 120.4° |
| C5 | C4 | N4 | 119.2° | 120.5° |
| C5 | C4 | N3 | 119.8° | 119.0° |
| C6 | N1 | C1' | 118.1° | 119.5° |
| C6 | N1 | C2 | 121.8° | 121.0° |
| N1 | C6 | H5 | 120.0° | 120.4° |
| C2' | C3' | O3' | 108.9° | 110.9° |
| C3' | C2' | C1' | 103.2° | 104.2° |
| C3' | C2' | H9 | 111.0° | 110.5° |
| C3' | C2' | H10 | 111.0° | 110.6° |
| C2' | C3' | H11 | 111.3° | 110.9° |
| O3' | C3' | H11 | 112.6° | 110.8° |
| C3' | O3' | H13 | 109.5° | 113.9° |
| O4' | C1' | C2' | 105.6° | 107.4° |
| O4' | C1' | N1 | 108.8° | 109.9° |
| O4' | C1' | H8 | 110.7° | 109.9° |
| C2' | C1' | N1 | 112.2° | 109.9° |
| C2' | C1' | H8 | 109.3° | 109.9° |
| C1' | C2' | H9 | 111.0° | 110.5° |
| C1' | C2' | H10 | 111.0° | 110.5° |
| N4 | C4 | N3 | 120.9° | 120.5° |
| C4 | N4 | H6 | 109.5° | 120.0° |
| C4 | N4 | H7 | 109.4° | 120.0° |
| C4 | N3 | C2 | 121.3° | 120.6° |
| C1' | N1 | C2 | 120.0° | 119.5° |
| N1 | C1' | H8 | 110.1° | 109.8° |
| N1 | C2 | N3 | 119.6° | 121.9° |
| N1 | C2 | H1 | 120.2° | 119.0° |
| N3 | C2 | H1 | 120.2° | 119.1° |
| H2 | C5A | H3 | 109.5° | 109.5° |
| H2 | C5A | H4 | 109.5° | 109.5° |
| H3 | C5A | H4 | 109.5° | 109.4° |
| H6 | N4 | H7 | 109.5° | 120.0° |
| H9 | C2' | H10 | 109.5° | 110.4° |
| H14 | C5' | H15 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2A | PA | O3A | O1A | 131.8° | 120.0° |
| O2A | PA | O3A | O5' | 113.5° | 120.0° |
| O2A | PA | O1A | O5' | 121.6° | 120.0° |
| O2A | PA | O5' | C5' | 54.4° | 55.0° |
| O2A | PA | O1A | H16 | 0.0° | 179.9° |
| O2A | PA | O3A | H17 | 0.0° | 60.0° |
| O3A | PA | O1A | O5' | 111.7° | 120.0° |
| O3A | PA | O5' | C5' | 169.1° | 175.0° |
| O3A | PA | O1A | H16 | 126.7° | 60.0° |
| O1A | PA | O5' | C5' | 73.9° | 65.0° |
| O1A | PA | O3A | H17 | 131.8° | 60.0° |
| PA | O5' | C5' | C4' | 133.0° | 180.0° |
| PA | O5' | C5' | H14 | 12.8° | 60.0° |
| PA | O5' | C5' | H15 | 106.8° | 60.0° |
| O5' | PA | O1A | H16 | 121.6° | 60.0° |
| O5' | PA | O3A | H17 | 113.5° | 179.9° |
| O5' | C5' | C4' | H14 | 120.2° | 120.1° |
| O5' | C5' | C4' | H15 | 120.2° | 120.0° |
| O5' | C5' | C4' | C3' | 62.9° | 175.0° |
| O5' | C5' | C4' | O4' | 56.2° | 70.8° |
| O5' | C5' | C4' | H12 | 177.0° | 52.0° |
| O5' | C5' | H14 | H15 | 119.3° | 120.0° |
| C5' | C4' | C3' | O4' | 122.6° | 118.6° |
| C5' | C4' | C3' | H12 | 120.1° | 123.0° |
| C5' | C4' | O4' | H12 | 120.0° | 122.9° |
| C5' | C4' | C3' | C2' | 102.1° | 155.5° |
| C5' | C4' | C3' | O3' | 142.1° | 86.3° |
| C5' | C4' | O4' | C1' | 119.7° | 158.4° |
| C5' | C4' | C3' | H11 | 18.4° | 37.3° |
| C4' | C5' | H14 | H15 | 119.3° | 120.0° |
| C5A | C5 | C6 | C4 | 178.0° | 179.5° |
| C5A | C5 | C6 | N1 | 179.8° | 180.0° |
| C5A | C5 | C4 | N4 | 3.9° | 0.3° |
| C5A | C5 | C4 | N3 | 179.9° | 179.8° |
| C5 | C5A | H2 | H3 | 120.0° | 120.0° |
| C5 | C5A | H2 | H4 | 120.0° | 120.0° |
| C5 | C5A | H3 | H4 | 120.0° | 119.9° |
| C5A | C5 | C6 | H5 | 0.1° | 0.4° |
| C3' | C4' | O4' | H12 | 116.5° | 118.5° |
| C4' | C3' | C2' | O3' | 114.8° | 118.2° |
| C4' | C3' | C2' | H11 | 120.5° | 118.2° |
| C4' | C3' | O3' | H11 | 122.9° | 123.7° |
| C3' | C4' | O4' | C1' | 3.7° | 39.9° |
| C4' | C3' | C2' | C1' | 28.6° | 20.9° |
| C4' | C3' | C2' | H9 | 90.4° | 97.8° |
| C4' | C3' | C2' | H10 | 147.6° | 139.6° |
| C4' | C3' | O3' | H13 | 180.0° | 174.1° |
| C3' | C4' | C5' | H14 | 57.3° | 54.9° |
| C3' | C4' | C5' | H15 | 176.9° | 65.0° |
| O4' | C4' | C3' | C2' | 20.5° | 36.9° |
| O4' | C4' | C3' | O3' | 95.3° | 155.1° |
| C4' | O4' | C1' | C2' | 14.6° | 26.3° |
| C4' | O4' | C1' | N1 | 135.2° | 145.9° |
| C4' | O4' | C1' | H8 | 103.6° | 93.2° |
| O4' | C4' | C3' | H11 | 141.0° | 81.3° |
| O4' | C4' | C5' | H14 | 176.4° | 169.2° |
| O4' | C4' | C5' | H15 | 64.0° | 49.2° |
| C5 | C6 | N1 | H5 | 180.0° | 179.6° |
| C6 | C5 | C4 | N4 | 178.1° | 179.8° |
| C6 | C5 | C4 | N3 | 1.9° | 0.2° |
| C5 | C6 | N1 | C1' | 174.2° | 179.8° |
| C5 | C6 | N1 | C2 | 1.1° | 0.5° |
| C6 | C5 | C5A | H2 | 88.9° | 90.0° |
| C6 | C5 | C5A | H3 | 151.1° | 150.0° |
| C6 | C5 | C5A | H4 | 31.1° | 30.0° |
| C4 | C5 | C6 | N1 | 1.8° | 0.4° |
| C5 | C4 | N4 | N3 | 176.2° | 179.9° |
| C5 | C4 | N3 | C2 | 1.1° | 0.0° |
| C4 | C5 | C5A | H2 | 89.0° | 90.5° |
| C4 | C5 | C5A | H3 | 31.0° | 29.5° |
| C4 | C5 | C5A | H4 | 151.0° | 149.5° |
| C4 | C5 | C6 | H5 | 178.1° | 179.9° |
| C5 | C4 | N4 | H6 | 176.2° | 180.0° |
| C5 | C4 | N4 | H7 | 56.2° | 0.0° |
| C6 | N1 | C1' | O4' | 38.2° | 141.9° |
| C6 | N1 | C1' | C2' | 78.2° | 100.0° |
| C6 | N1 | C1' | C2 | 175.4° | 179.7° |
| C6 | N1 | C2 | N3 | 0.2° | 0.3° |
| C6 | N1 | C2 | H1 | 179.8° | 179.8° |
| C6 | N1 | C1' | H8 | 159.7° | 21.0° |
| C2' | C3' | O3' | H11 | 123.9° | 123.7° |
| C3' | C2' | C1' | O4' | 26.5° | 1.9° |
| C3' | C2' | C1' | H9 | 119.0° | 118.7° |
| C3' | C2' | C1' | H10 | 119.0° | 118.8° |
| C3' | C2' | C1' | N1 | 144.9° | 121.5° |
| C3' | C2' | C1' | H8 | 92.6° | 117.6° |
| C3' | C2' | H9 | H10 | 122.9° | 122.7° |
| C2' | C3' | C4' | H12 | 137.8° | 81.5° |
| C2' | C3' | O3' | H13 | 66.8° | 61.5° |
| O3' | C3' | C2' | C1' | 86.2° | 139.1° |
| O3' | C3' | C2' | H9 | 154.8° | 20.4° |
| O3' | C3' | C2' | H10 | 32.8° | 102.2° |
| O3' | C3' | C4' | H12 | 22.0° | 36.7° |
| O4' | C1' | C2' | N1 | 118.4° | 119.6° |
| O4' | C1' | C2' | H8 | 119.1° | 119.5° |
| O4' | C1' | N1 | H8 | 121.5° | 121.0° |
| O4' | C1' | N1 | C2 | 137.1° | 38.3° |
| O4' | C1' | C2' | H9 | 92.5° | 120.6° |
| O4' | C1' | C2' | H10 | 145.6° | 116.9° |
| C1' | O4' | C4' | H12 | 120.3° | 78.6° |
| C2' | C1' | N1 | H8 | 122.0° | 121.0° |
| C2' | C1' | N1 | C2 | 106.4° | 79.7° |
| C1' | C2' | H9 | H10 | 122.9° | 122.5° |
| C1' | C2' | C3' | H11 | 149.2° | 97.3° |
| N4 | C4 | N3 | C2 | 177.2° | 180.0° |
| C4 | N4 | H6 | H7 | 120.0° | 180.0° |
| C4 | N3 | C2 | N1 | 0.3° | 0.0° |
| C4 | N3 | C2 | H1 | 179.7° | 180.0° |
| N3 | C4 | N4 | H6 | 0.0° | 0.0° |
| N3 | C4 | N4 | H7 | 120.0° | 180.0° |
| C1' | N1 | C2 | N3 | 175.0° | 180.0° |
| C1' | N1 | C2 | H1 | 5.0° | 0.0° |
| C1' | N1 | C6 | H5 | 5.8° | 0.2° |
| N1 | C1' | C2' | H9 | 25.9° | 119.8° |
| N1 | C1' | C2' | H10 | 96.0° | 2.7° |
| N1 | C2 | N3 | H1 | 180.0° | 180.0° |
| C2 | N1 | C6 | H5 | 178.9° | 179.9° |
| C2 | N1 | C1' | H8 | 15.7° | 159.3° |
| H2 | C5A | H3 | H4 | 120.0° | 120.0° |
| H8 | C1' | C2' | H9 | 148.4° | 1.1° |
| H8 | C1' | C2' | H10 | 26.4° | 123.6° |
| H9 | C2' | C3' | H11 | 30.2° | 144.0° |
| H10 | C2' | C3' | H11 | 91.8° | 21.4° |
| H11 | C3' | C4' | H12 | 101.7° | 160.3° |
| H11 | C3' | O3' | H13 | 57.1° | 62.2° |
| H12 | C4' | C5' | H14 | 62.8° | 68.0° |
| H12 | C4' | C5' | H15 | 56.7° | 172.0° |
