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SummaryGeometryRelated PDB entries

9JE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O01C02sing1.43Å1.43Å
C02C03sing1.53Å1.50Å
C03C04sing1.53Å1.52Å
C04C05sing1.53Å1.52Å
C05C06sing1.53Å1.54Å
O07C06sing1.43Å1.46Å
C02H1sing1.09Å1.10Å
C02H2sing1.09Å1.10Å
C03H3sing1.09Å1.10Å
C03H4sing1.09Å1.10Å
C04H5sing1.09Å1.10Å
C04H6sing1.09Å1.10Å
C05H7sing1.09Å1.10Å
C05H8sing1.09Å1.10Å
C06H9sing1.09Å1.10Å
C06H10sing1.09Å1.10Å
O01H11sing0.97Å0.95Å
O07H12sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O01C02C0397.2°109.5°
O01C02H1112.5°109.5°
O01C02H2112.5°109.5°
C02O01H11109.5°114.0°
C02C03C04109.2°109.4°
C03C02H1112.4°109.5°
C03C02H2112.4°109.5°
C02C03H3109.5°109.5°
C02C03H4109.6°109.5°
C03C04C05109.6°109.4°
C04C03H3109.5°109.5°
C04C03H4109.5°109.5°
C03C04H5109.4°109.5°
C03C04H6109.4°109.5°
C04C05C06110.9°109.4°
C05C04H5109.4°109.5°
C05C04H6109.4°109.5°
C04C05H7109.1°109.5°
C04C05H8109.1°109.5°
C05C06O07105.5°109.5°
C06C05H7109.1°109.5°
C06C05H8109.1°109.5°
C05C06H9110.5°109.5°
C05C06H10110.4°109.5°
O07C06H9110.4°109.5°
O07C06H10110.4°109.5°
C06O07H12109.5°114.0°
H1C02H2109.5°109.5°
H3C03H4109.5°109.5°
H5C04H6109.5°109.5°
H7C05H8109.5°109.5°
H9C06H10109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O01C02C03H1118.0°120.0°
O01C02C03H2118.0°120.0°
O01C02C03C04176.6°180.0°
O01C02H1H2125.8°120.0°
O01C02C03H363.4°60.0°
O01C02C03H456.7°60.0°
C02C03C04H3120.0°120.0°
C02C03C04H4120.0°120.0°
C02C03C04C05152.7°180.0°
C03C02H1H2125.7°120.0°
C02C03H3H4120.1°120.0°
C02C03C04H587.2°60.0°
C02C03C04H632.7°60.0°
C03C02O01H11180.0°180.0°
C03C04C05H5120.0°120.0°
C03C04C05H6120.0°120.0°
C03C04C05C06136.1°180.0°
C04C03C02H158.7°60.0°
C04C03C02H265.4°60.0°
C04C03H3H4120.1°120.0°
C03C04H5H6119.9°120.0°
C03C04C05H7103.7°60.0°
C03C04C05H815.8°60.0°
C04C05C06H7120.2°120.0°
C04C05C06H8120.2°120.0°
C04C05C06O0799.4°180.0°
C05C04C03H332.8°60.0°
C05C04C03H487.3°60.0°
C05C04H5H6119.9°120.0°
C04C05H7H8119.3°120.0°
C04C05C06H920.0°60.0°
C04C05C06H10141.3°60.0°
C05C06O07H9119.4°120.0°
C05C06O07H10119.3°120.0°
C06C05C04H516.0°60.0°
C06C05C04H6103.9°60.0°
C06C05H7H8119.3°120.0°
C05C06H9H10121.9°120.0°
C05C06O07H12180.0°180.0°
O07C06C05H7140.4°60.0°
O07C06C05H820.8°60.0°
O07C06H9H10121.8°120.0°
H1C02C03H3178.6°60.0°
H1C02C03H461.3°180.0°
H1C02O01H1162.1°60.0°
H2C02C03H354.5°180.0°
H2C02C03H4174.6°60.0°
H2C02O01H1162.0°60.0°
H3C03C04H5152.8°180.0°
H3C03C04H687.2°60.0°
H4C03C04H532.8°60.0°
H4C03C04H6152.7°180.0°
H5C04C05H7136.3°180.0°
H5C04C05H8104.2°60.0°
H6C04C05H716.3°60.0°
H6C04C05H8135.8°180.0°
H7C05C06H9100.2°180.0°
H7C05C06H1021.0°60.0°
H8C05C06H9140.2°60.0°
H8C05C06H1098.5°180.0°
H9C06O07H1260.6°60.0°
H10C06O07H1260.7°60.0°

249697

PDB entries from 2026-02-25

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