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SummaryGeometryRelated PDB entries

9J5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAVCAUsing1.51Å1.46Å
CAZCAYsing1.53Å1.49Å
OBDCBEsing1.43Å1.45Å
OBDCAPsing1.36Å1.38Å
NATCAUdoub1.31Å1.33ÅAromatic
NATNASsing1.29Å1.34ÅAromatic
CAUNALsing1.36Å1.47ÅAromatic
CAOCAPdoub1.38Å1.43ÅAromatic
CAOCAMsing1.39Å1.44ÅAromatic
CAYCAWsing1.53Å1.53Å
NASCAKdoub1.30Å1.35ÅAromatic
CAPCAQsing1.39Å1.38ÅAromatic
NALCAKsing1.36Å1.42ÅAromatic
NALCAMsing1.39Å1.50Å
CAKCAJsing1.51Å1.47Å
CAMCANdoub1.40Å1.42ÅAromatic
CAQCARdoub1.37Å1.42ÅAromatic
CAWCAJsing1.53Å1.58Å
CAWCAXsing1.51Å1.56Å
CAJNAIsing1.47Å1.51Å
CANCARsing1.40Å1.40ÅAromatic
CANCAHsing1.47Å1.51Å
CAXOBAsing1.34Å1.34Å
CAXOBBdoub1.21Å1.24Å
OBACBCsing1.45Å1.43Å
NAICAHdoub1.29Å1.27Å
CAHCAEsing1.48Å1.57Å
CAECADdoub1.39Å1.37ÅAromatic
CAECAFsing1.39Å1.39ÅAromatic
CADCACsing1.38Å1.40ÅAromatic
CAFCAGdoub1.38Å1.41ÅAromatic
CACCABdoub1.39Å1.35ÅAromatic
CAGCABsing1.38Å1.37ÅAromatic
CABCLAsing1.74Å1.76Å
CBCHBCsing1.09Å1.10Å
CBCHBEsing1.09Å1.10Å
CBCHBDsing1.09Å1.10Å
CAWHAYsing1.09Å1.10Å
CAYHAZsing1.09Å1.10Å
CAYHA0sing1.09Å1.10Å
CAZHA2sing1.09Å1.10Å
CAZHA1sing1.09Å1.10Å
CAZHA3sing1.09Å1.10Å
CAJHAJsing1.09Å1.10Å
CAVHAXsing1.09Å1.10Å
CAVHAVsing1.09Å1.10Å
CAVHAWsing1.09Å1.10Å
CAOHAOsing1.08Å1.08Å
CBEHBFsing1.09Å1.10Å
CBEHBGsing1.09Å1.10Å
CBEHBHsing1.09Å1.10Å
CAQHAQsing1.08Å1.08Å
CARHARsing1.08Å1.08Å
CADHADsing1.08Å1.08Å
CACHACsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CAFHAFsing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAVCAUNAT124.2°126.6°
CAVCAUNAL127.6°126.5°
CAUCAVHAX109.5°109.5°
CAUCAVHAV109.5°109.5°
CAUCAVHAW109.4°109.5°
CAZCAYCAW116.9°109.4°
CAZCAYHAZ107.6°109.5°
CAZCAYHA0107.6°109.4°
CAYCAZHA2109.5°109.5°
CAYCAZHA1109.5°109.4°
CAYCAZHA3109.5°109.4°
CBEOBDCAP120.2°117.0°
OBDCBEHBF109.5°109.5°
OBDCBEHBG109.5°109.5°
OBDCBEHBH109.5°109.5°
OBDCAPCAO123.0°120.1°
OBDCAPCAQ121.3°120.1°
CAUNATNAS110.2°109.9°
NATCAUNAL108.2°106.9°
NATNASCAK109.7°109.6°
CAUNALCAK103.1°106.1°
CAUNALCAM135.1°127.8°
CAPCAOCAM123.5°120.5°
CAOCAPCAQ115.7°119.8°
CAPCAOHAO118.3°119.8°
CAOCAMNAL119.0°118.3°
CAOCAMCAN119.3°119.9°
CAMCAOHAO118.2°119.7°
CAYCAWCAJ109.4°109.5°
CAYCAWCAX111.9°109.5°
CAYCAWHAY108.4°109.4°
CAWCAYHAZ107.6°109.5°
CAWCAYHA0107.6°109.5°
NASCAKNAL108.8°107.4°
NASCAKCAJ130.8°127.5°
CAPCAQCAR121.0°120.2°
CAPCAQHAQ119.5°119.9°
CAKNALCAM121.8°126.0°
NALCAKCAJ120.5°125.1°
NALCAMCAN121.7°121.8°
CAKCAJCAW115.9°109.8°
CAKCAJNAI111.8°107.7°
CAKCAJHAJ105.1°109.9°
CAMCANCAR115.8°119.0°
CAMCANCAH127.8°123.0°
CAQCARCAN124.7°120.6°
CARCAQHAQ119.5°119.9°
CAQCARHAR117.7°119.7°
CAJCAWCAX111.2°109.5°
CAWCAJNAI113.9°109.8°
CAJCAWHAY107.7°109.5°
CAWCAJHAJ104.0°109.8°
CAWCAXOBA123.4°120.0°
CAWCAXOBB119.1°120.0°
CAXCAWHAY108.1°109.4°
CAJNAICAH121.9°121.9°
NAICAJHAJ104.7°109.8°
CARCANCAH116.5°118.0°
CANCARHAR117.7°119.7°
CANCAHNAI122.1°127.9°
CANCAHCAE121.4°116.1°
OBACAXOBB117.5°120.0°
CAXOBACBC121.9°117.0°
OBACBCHBC109.5°109.5°
OBACBCHBE109.5°109.4°
OBACBCHBD109.4°109.5°
NAICAHCAE115.0°116.0°
CAHCAECAD121.5°120.2°
CAHCAECAF122.4°120.1°
CADCAECAF116.1°119.7°
CAECADCAC123.1°119.9°
CAECADHAD118.5°120.0°
CAECAFCAG122.4°119.9°
CAECAFHAF118.8°120.1°
CADCACCAB118.6°120.1°
CACCADHAD118.5°120.1°
CADCACHAC120.7°120.0°
CAFCAGCAB117.7°120.1°
CAFCAGHAG121.2°120.0°
CAGCAFHAF118.8°120.0°
CACCABCAG122.2°120.2°
CACCABCLA120.5°119.9°
CABCACHAC120.7°119.9°
CAGCABCLA117.3°119.9°
CABCAGHAG121.2°119.9°
HBCCBCHBE109.5°109.5°
HBCCBCHBD109.5°109.5°
HBECBCHBD109.5°109.4°
HAZCAYHA0109.4°109.5°
HA2CAZHA1109.5°109.5°
HA2CAZHA3109.5°109.5°
HA1CAZHA3109.4°109.5°
HAXCAVHAV109.4°109.5°
HAXCAVHAW109.5°109.4°
HAVCAVHAW109.5°109.5°
HBFCBEHBG109.5°109.5°
HBFCBEHBH109.5°109.5°
HBGCBEHBH109.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAVCAUNATNAL179.1°179.9°
CAVCAUNATNAS179.2°179.2°
CAVCAUNALCAK179.0°178.2°
CAVCAUNALCAM0.8°3.5°
CAUCAVHAXHAV120.0°120.0°
CAUCAVHAXHAW120.0°120.0°
CAUCAVHAVHAW120.0°120.1°
CAZCAYCAWHAZ121.1°120.0°
CAZCAYCAWHA0121.1°119.9°
CAZCAYCAWCAJ40.2°175.0°
CAZCAYCAWCAX83.5°65.0°
CAZCAYCAWHAY157.4°55.0°
CAZCAYHAZHA0116.6°120.0°
CAYCAZHA2HA1120.0°120.0°
CAYCAZHA2HA3120.0°119.9°
CAYCAZHA1HA3120.0°119.9°
CBEOBDCAPCAO179.6°180.0°
CBEOBDCAPCAQ0.3°0.0°
OBDCBEHBFHBG120.0°120.0°
OBDCBEHBFHBH120.0°120.0°
OBDCBEHBGHBH120.0°120.0°
OBDCAPCAOCAQ179.9°180.0°
OBDCAPCAOCAM179.2°179.9°
OBDCAPCAQCAR179.9°179.2°
OBDCAPCAOHAO0.8°0.2°
CAPOBDCBEHBF180.0°59.9°
CAPOBDCBEHBG60.0°60.1°
CAPOBDCBEHBH60.0°180.0°
OBDCAPCAQHAQ0.1°0.7°
CAUNATNASCAK0.3°0.6°
NATCAUNALCAK0.1°1.9°
NATCAUNALCAM179.8°176.4°
NATCAUCAVHAX0.0°89.9°
NATCAUCAVHAV120.0°150.0°
NATCAUCAVHAW120.0°30.0°
NASNATCAUNAL0.1°0.8°
NATNASCAKNAL0.3°1.8°
NATNASCAKCAJ179.2°177.9°
CAUNALCAMCAO39.2°34.5°
CAUNALCAKNAS0.2°2.2°
CAUNALCAKCAM179.8°178.3°
CAUNALCAKCAJ179.3°177.5°
CAUNALCAMCAN142.5°145.8°
NALCAUCAVHAX178.9°90.0°
NALCAUCAVHAV61.1°30.0°
NALCAUCAVHAW58.9°150.1°
CAPCAOCAMHAO180.0°180.0°
CAPCAOCAMNAL179.6°178.3°
CAPCAOCAMCAN1.3°1.4°
CAOCAPCAQCAR0.2°0.7°
CAOCAPCAQHAQ179.8°179.3°
CAMCAOCAPCAQ0.8°0.1°
CAOCAMNALCAK140.5°143.4°
CAOCAMNALCAN178.3°179.7°
CAOCAMCANCAR1.1°2.2°
CAOCAMCANCAH179.3°175.8°
CAYCAWCAJCAK49.4°62.4°
CAYCAWCAJCAX124.1°120.0°
CAYCAWCAJHAY117.6°120.0°
CAYCAWCAXHAY119.2°119.9°
CAYCAWCAJNAI178.8°179.3°
CAYCAWCAXOBA98.1°117.5°
CAYCAWCAXOBB82.2°62.4°
CAWCAYHAZHA0116.6°120.0°
CAWCAYCAZHA2180.0°60.0°
CAWCAYCAZHA160.0°60.0°
CAWCAYCAZHA360.0°180.0°
CAYCAWCAJHAJ65.4°58.5°
NASCAKNALCAJ179.0°179.7°
NASCAKNALCAM180.0°176.1°
NASCAKCAJCAW20.4°119.4°
NASCAKCAJNAI112.4°121.0°
NASCAKCAJHAJ134.6°1.4°
CAPCAQCARHAQ180.0°180.0°
CAPCAQCARCAN0.1°0.1°
CAQCAPCAOHAO179.2°179.9°
CAPCAQCARHAR179.9°180.0°
CAKNALCAMCAN37.8°36.3°
NALCAKCAJCAW160.8°60.9°
NALCAKCAJNAI66.4°58.6°
NALCAKCAJHAJ46.6°178.2°
CAMNALCAKCAJ1.0°4.2°
NALCAMCANCAR179.4°177.5°
NALCAMCANCAH1.1°4.6°
NALCAMCAOHAO0.4°1.6°
CAKCAJCAWNAI131.8°118.3°
CAKCAJCAWHAJ114.8°120.9°
CAKCAJCAWCAX173.5°177.6°
CAKCAJNAIHAJ113.3°119.6°
CAKCAJNAICAH69.1°61.1°
CAKCAJCAWHAY68.2°57.6°
CAMCANCARCAQ0.6°1.5°
CAMCANCARCAH179.6°178.0°
CAMCANCAHNAI38.7°41.8°
CAMCANCAHCAE126.3°138.2°
CANCAMCAOHAO178.7°178.7°
CAMCANCARHAR179.4°178.6°
CAQCARCANHAR180.0°179.9°
CAQCARCANCAH179.8°176.5°
CAJCAWCAXHAY118.1°120.1°
CAWCAJNAIHAJ113.0°120.8°
CAJCAWCAXOBA24.6°122.5°
CAJCAWCAXOBB155.1°57.6°
CAWCAJNAICAH157.1°58.4°
CAJCAWCAYHAZ80.9°55.0°
CAJCAWCAYHA0161.3°65.1°
CAXCAWCAJNAI54.7°59.3°
CAWCAXOBAOBB179.7°179.9°
CAWCAXOBACBC179.6°174.8°
CAXCAWCAYHAZ155.4°175.0°
CAXCAWCAYHA037.6°55.0°
CAXCAWCAJHAJ58.7°61.5°
CAJNAICAHCAN2.5°1.2°
CAJNAICAHCAE168.4°178.7°
NAICAJCAWHAY63.6°60.7°
CARCANCAHNAI141.8°140.2°
CARCANCAHCAE53.2°39.8°
CANCARCAQHAQ179.9°179.9°
CANCAHNAICAE165.9°180.0°
CANCAHCAECAD30.4°153.6°
CANCAHCAECAF148.2°26.6°
CAHCANCARHAR0.2°3.4°
CAXOBACBCHBC180.0°64.4°
CAXOBACBCHBE60.0°55.6°
CAXOBACBCHBD60.0°175.5°
OBACAXCAWHAY142.7°2.4°
OBBCAXOBACBC0.1°5.1°
OBBCAXCAWHAY37.0°177.6°
OBACBCHBCHBE120.0°120.0°
OBACBCHBCHBD120.0°120.1°
OBACBCHBEHBD120.0°119.9°
NAICAHCAECAD135.6°26.3°
NAICAHCAECAF45.8°153.4°
CAHNAICAJHAJ44.1°179.2°
CAHCAECADCAF178.6°179.8°
CAHCAECADCAC179.5°180.0°
CAHCAECAFCAG179.4°179.8°
CAHCAECADHAD0.5°0.0°
CAHCAECAFHAF0.6°0.1°
CAECADCACHAD180.0°180.0°
CADCAECAFCAG0.8°0.4°
CAECADCACCAB0.6°0.0°
CAECADCACHAC179.4°180.0°
CADCAECAFHAF179.2°179.7°
CAFCAECADCAC0.8°0.2°
CAECAFCAGHAF180.0°179.9°
CAECAFCAGCAB0.5°0.4°
CAFCAECADHAD179.2°179.8°
CAECAFCAGHAG179.5°179.8°
CADCACCABHAC180.0°180.0°
CADCACCABCAG0.2°0.0°
CADCACCABCLA180.0°180.0°
CAFCAGCABCAC0.2°0.2°
CAFCAGCABHAG180.0°179.8°
CAFCAGCABCLA179.9°179.8°
CACCABCAGCLA179.8°180.0°
CABCACCADHAD179.4°180.0°
CACCABCAGHAG179.8°180.0°
CAGCABCACHAC179.8°179.9°
CABCAGCAFHAF179.5°179.7°
CLACABCACHAC0.0°0.0°
CLACABCAGHAG0.0°0.0°
HBCCBCHBEHBD120.0°120.0°
HAYCAWCAYHAZ36.3°65.0°
HAYCAWCAYHA081.5°174.9°
HAYCAWCAJHAJ177.0°178.5°
HAZCAYCAZHA258.9°NaN°
HAZCAYCAZHA161.1°59.9°
HAZCAYCAZHA3178.9°60.0°
HA0CAYCAZHA258.9°59.9°
HA0CAYCAZHA1178.9°NaN°
HA0CAYCAZHA361.1°60.0°
HA2CAZHA1HA3120.0°120.0°
HAXCAVHAVHAW120.0°119.9°
HBFCBEHBGHBH120.0°120.0°
HAQCAQCARHAR0.1°0.0°
HADCADCACHAC0.6°0.0°
HAGCAGCAFHAF0.5°0.1°

248335

PDB entries from 2026-01-28

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