Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9EK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C27N2sing1.47Å1.45Å
O3C1doub1.22Å1.21Å
N2C1sing1.35Å1.36Å
N2C21sing1.40Å1.43Å
C1C4sing1.48Å1.50Å
C22C21doub1.39Å1.38ÅAromatic
C22C25sing1.38Å1.38ÅAromatic
C21C26sing1.39Å1.38ÅAromatic
C4C5doub1.39Å1.39ÅAromatic
C4C7sing1.41Å1.41ÅAromatic
O8C7sing1.36Å1.35Å
C25C23doub1.39Å1.39ÅAromatic
C18C17sing1.55Å1.45Å
C18C19sing1.55Å1.51Å
C5C10sing1.40Å1.39ÅAromatic
C7C6doub1.36Å1.39ÅAromatic
C26C24doub1.38Å1.38ÅAromatic
C17C16sing1.54Å1.51Å
C19N15sing1.47Å1.46Å
C23C24sing1.39Å1.39ÅAromatic
C23N28sing1.40Å1.39Å
C16N15sing1.47Å1.46Å
N15C14sing1.35Å1.34Å
C10C9sing1.47Å1.40ÅAromatic
C10C11doub1.40Å1.45ÅAromatic
C6C9sing1.41Å1.39ÅAromatic
C29N28sing1.47Å1.47Å
C29C30sing1.53Å1.52Å
N28C33sing1.47Å1.47Å
C9N13doub1.32Å1.35ÅAromatic
C14C11sing1.47Å1.50Å
C14O20doub1.22Å1.21Å
C11N12sing1.36Å1.34ÅAromatic
C30O31sing1.43Å1.41Å
C33C32sing1.53Å1.51Å
N13N12sing1.28Å1.35ÅAromatic
O31C32sing1.43Å1.40Å
C16H1sing1.09Å1.10Å
C16H2sing1.09Å1.10Å
C19H3sing1.09Å1.10Å
C19H4sing1.09Å1.10Å
C22H5sing1.08Å1.08Å
C24H6sing1.08Å1.08Å
C27H7sing1.09Å1.10Å
C27H8sing1.09Å1.10Å
C27H9sing1.09Å1.10Å
C30H10sing1.09Å1.10Å
C30H11sing1.09Å1.10Å
C32H12sing1.09Å1.10Å
C32H13sing1.09Å1.10Å
C33H14sing1.09Å1.10Å
C33H15sing1.09Å1.10Å
C5H16sing1.08Å1.08Å
C6H17sing1.08Å1.08Å
O8H18sing0.97Å0.95Å
N12H19sing0.97Å1.00Å
C17H20sing1.09Å1.10Å
C17H21sing1.09Å1.10Å
C18H22sing1.09Å1.10Å
C18H23sing1.09Å1.10Å
C25H24sing1.08Å1.08Å
C26H25sing1.08Å1.08Å
C29H26sing1.09Å1.10Å
C29H27sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C27N2C1118.6°120.0°
C27N2C21116.3°120.0°
N2C27H7109.5°109.5°
N2C27H8109.5°109.5°
N2C27H9109.4°109.4°
O3C1N2121.9°119.9°
O3C1C4119.5°120.0°
C1N2C21125.1°120.0°
N2C1C4118.5°120.0°
N2C21C22120.2°120.0°
N2C21C26120.4°120.0°
C1C4C5121.1°119.5°
C1C4C7119.4°119.5°
C21C22C25120.4°120.0°
C22C21C26119.2°120.0°
C21C22H5119.8°120.0°
C22C25C23121.0°120.0°
C25C22H5119.8°120.0°
C22C25H24119.5°120.0°
C21C26C24120.5°120.0°
C21C26H25119.7°120.0°
C5C4C7119.5°121.0°
C4C5C10120.2°119.4°
C4C5H16119.9°120.4°
C4C7O8120.0°119.2°
C4C7C6121.0°121.5°
O8C7C6118.9°119.2°
C7O8H18109.5°114.0°
C25C23C24118.2°120.0°
C25C23N28120.3°119.9°
C23C25H24119.5°120.1°
C17C18C19106.4°101.5°
C18C17C16105.8°103.0°
C18C17H20110.4°110.7°
C18C17H21110.4°110.8°
C17C18H22110.2°111.0°
C17C18H23110.2°111.0°
C18C19N15103.9°104.9°
C18C19H3110.8°110.4°
C18C19H4110.8°110.4°
C19C18H22110.2°111.0°
C19C18H23110.2°111.0°
C5C10C9119.1°119.4°
C5C10C11134.7°136.1°
C10C5H16119.9°120.3°
C7C6C9118.4°119.8°
C7C6H17120.8°120.1°
C26C24C23120.6°120.0°
C26C24H6119.7°119.9°
C24C26H25119.7°120.1°
C17C16N15103.5°107.3°
C17C16H1111.0°109.9°
C17C16H2110.9°110.0°
C16C17H20110.4°110.8°
C16C17H21110.4°110.7°
C19N15C16111.2°108.7°
C19N15C14124.3°125.6°
N15C19H3110.9°110.4°
N15C19H4110.8°110.4°
C24C23N28121.4°120.0°
C23C24H6119.7°120.0°
C23N28C29115.9°111.0°
C23N28C33119.6°111.0°
C16N15C14124.5°125.7°
N15C16H1111.0°109.8°
N15C16H2111.0°109.9°
N15C14C11119.5°120.0°
N15C14O20123.0°120.0°
C9C10C11106.2°104.4°
C10C9C6121.8°118.8°
C10C9N13106.2°106.1°
C10C11C14124.7°126.9°
C10C11N12107.1°106.3°
C6C9N13132.0°135.0°
C9C6H17120.8°120.1°
N28C29C30110.3°109.3°
C29N28C33114.5°110.8°
N28C29H26109.3°109.5°
N28C29H27109.2°109.5°
C29C30O31111.4°109.2°
C29C30H10109.0°109.5°
C29C30H11109.0°109.5°
C30C29H26109.3°109.5°
C30C29H27109.3°109.5°
N28C33C32110.6°109.3°
N28C33H14109.2°109.5°
N28C33H15109.2°109.6°
C9N13N12111.7°111.4°
C11C14O20117.4°120.0°
C14C11N12127.9°126.9°
C11N12N13108.7°111.8°
C11N12H19125.6°124.1°
C30O31C32110.7°113.8°
O31C30H10109.0°109.5°
O31C30H11109.0°109.5°
C33C32O31111.6°109.2°
C33C32H12108.9°109.5°
C33C32H13109.0°109.5°
C32C33H14109.2°109.5°
C32C33H15109.2°109.5°
N13N12H19125.7°124.0°
O31C32H12108.9°109.5°
O31C32H13108.9°109.5°
H1C16H2109.4°109.9°
H3C19H4109.5°110.3°
H7C27H8109.4°109.6°
H7C27H9109.5°109.4°
H8C27H9109.5°109.5°
H10C30H11109.5°109.6°
H12C32H13109.5°109.5°
H14C33H15109.5°109.5°
H20C17H21109.5°110.7°
H22C18H23109.5°110.9°
H26C29H27109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C27N2C1O31.4°174.6°
C27N2C1C21180.0°180.0°
C27N2C1C4179.3°5.2°
C27N2C21C2263.1°172.2°
C27N2C21C26112.9°8.1°
N2C27H7H8120.0°120.1°
N2C27H7H9120.0°119.9°
N2C27H8H9120.0°119.9°
O3C1N2C4177.8°179.7°
O3C1N2C21178.6°5.4°
O3C1C4C5126.9°145.2°
O3C1C4C753.6°34.8°
C1N2C21C22116.9°7.8°
C1N2C21C2667.2°171.9°
N2C1C4C555.2°34.6°
N2C1C4C7124.2°145.4°
C1N2C27H7180.0°95.3°
C1N2C27H860.0°144.5°
C1N2C27H960.0°24.6°
C21N2C1C40.8°174.8°
N2C21C22C26176.0°179.7°
N2C21C22C25175.6°179.7°
N2C21C26C24175.7°179.7°
N2C21C22H54.4°0.3°
C21N2C27H70.0°84.6°
C21N2C27H8120.0°35.5°
C21N2C27H9120.1°155.4°
N2C21C26H254.3°0.2°
C1C4C5C7179.4°180.0°
C1C4C7O82.4°0.3°
C1C4C5C10177.9°180.0°
C1C4C7C6178.2°180.0°
C1C4C5H162.1°0.0°
C21C22C25H5180.0°180.0°
C21C22C25C230.5°0.0°
C22C21C26C240.3°0.0°
C21C22C25H24179.5°180.0°
C22C21C26H25179.7°180.0°
C25C22C21C260.4°0.0°
C22C25C23H24180.0°180.0°
C22C25C23C240.4°0.0°
C22C25C23N28177.5°180.0°
C21C26C24H25180.0°180.0°
C21C26C24C230.2°0.0°
C26C21C22H5179.6°180.0°
C21C26C24H6179.8°180.0°
C5C4C7O8178.1°179.7°
C4C5C10H16180.0°180.0°
C5C4C7C61.2°0.0°
C4C5C10C90.7°0.0°
C4C5C10C11176.3°179.9°
C4C7O8C6179.4°179.7°
C7C4C5C101.5°0.0°
C4C7C6C90.1°0.0°
C7C4C5H16178.5°180.0°
C4C7C6H17179.9°180.0°
C4C7O8H1815.5°89.8°
O8C7C6C9179.3°179.7°
O8C7C6H170.7°0.3°
C25C23C24C260.3°0.0°
C25C23C24N28177.9°180.0°
C25C23N28C2936.9°123.7°
C25C23N28C33179.3°0.0°
C23C25C22H5179.6°180.0°
C25C23C24H6179.7°180.0°
C17C18C19H22119.5°118.0°
C17C18C19H23119.5°118.1°
C18C17C16H20119.4°118.3°
C18C17C16H21119.4°118.5°
C17C18C19N1522.3°37.0°
C18C17C16N1527.3°22.2°
C18C17C16H1146.3°141.6°
C18C17C16H291.8°97.3°
C17C18C19H3141.5°155.9°
C17C18C19H496.8°81.9°
C18C17H20H21121.7°123.3°
C17C18H22H23121.4°124.0°
C19C18C17C1631.2°35.5°
C18C19N15H3119.1°118.9°
C18C19N15H4119.1°118.9°
C18C19N15C164.9°24.1°
C18C19N15C14176.1°155.8°
C18C19H3H4122.6°122.3°
C19C18C17H2088.3°82.9°
C19C18C17H21150.6°153.9°
C19C18H22H23121.4°123.9°
C5C10C9C11177.8°179.9°
C5C10C9C60.5°0.0°
C5C10C9N13178.1°180.0°
C5C10C11C142.6°0.1°
C5C10C11N12177.9°179.9°
C7C6C9C100.8°0.0°
C7C6C9H17180.0°180.0°
C7C6C9N13177.4°180.0°
C6C7O8H18163.9°89.9°
C26C24C23H6180.0°179.9°
C26C24C23N28177.6°180.0°
C17C16N15C1913.5°1.1°
C17C16N15H1119.1°119.4°
C17C16N15H2119.0°119.6°
C17C16N15C14165.5°178.9°
C17C16H1H2122.8°121.2°
C16C17H20H21121.7°123.2°
C16C17C18H2288.3°82.5°
C16C17C18H23150.6°153.6°
C19N15C16C14179.0°180.0°
C19N15C14C113.0°175.1°
C19N15C14O20175.6°4.9°
C19N15C16H1132.5°118.4°
C19N15C16H2105.6°120.6°
N15C19H3H4122.6°122.3°
N15C19C18H2297.2°81.1°
N15C19C18H23141.8°155.1°
C24C23N28C29145.3°56.3°
C24C23N28C331.5°180.0°
C24C23C25H24179.6°180.0°
C23C24C26H25179.7°180.0°
C23N28C29C33145.7°123.8°
C23N28C29C30167.3°177.6°
C23N28C33C32168.4°177.6°
N28C23C24H62.4°0.0°
C23N28C33H1471.4°57.7°
C23N28C33H1548.2°62.4°
N28C23C25H242.5°0.0°
C23N28C29H2647.2°62.5°
C23N28C29H2772.6°57.6°
C16N15C14C11178.2°4.9°
C16N15C14O203.2°175.1°
N15C16H1H2122.8°121.0°
C16N15C19H3124.0°143.0°
C16N15C19H4114.2°94.8°
N15C16C17H2092.1°96.2°
N15C16C17H21146.7°140.7°
N15C14C11C1083.0°174.5°
N15C14C11O20178.7°180.0°
N15C14C11N12102.7°5.5°
C14N15C16H146.5°61.7°
C14N15C16H275.5°59.3°
C14N15C19H357.0°37.0°
C14N15C19H464.8°85.2°
C10C9C6N13178.2°180.0°
C9C10C11C14174.6°180.0°
C9C10C11N120.7°0.0°
C10C9N13N120.1°0.1°
C9C10C5H16179.3°180.0°
C10C9C6H17179.2°180.0°
C11C10C9C6178.2°180.0°
C11C10C9N130.3°0.0°
C10C11C14N12174.3°180.0°
C10C11C14O2098.3°5.6°
C10C11N12N130.8°0.0°
C11C10C5H163.7°0.1°
C10C11N12H19179.3°179.9°
C6C9N13N12178.5°179.9°
N28C29C30H26120.1°119.9°
N28C29C30H27120.1°120.0°
N28C29C30O3153.2°56.8°
C29N28C33C3247.3°58.6°
N28C29C30H1067.1°63.1°
N28C29C30H11173.5°176.7°
C29N28C33H1472.9°178.5°
C29N28C33H15167.5°61.4°
N28C29H26H27119.6°120.1°
C30C29N28C3347.0°58.6°
C29C30O31H10120.3°119.9°
C29C30O31H11120.3°119.9°
C29C30O31C3261.6°58.7°
C29C30H10H11119.1°120.1°
C30C29H26H27119.6°120.1°
N28C33C32H14120.1°119.9°
N28C33C32H15120.2°120.0°
N28C33C32O3153.8°56.9°
N28C33C32H12174.0°176.8°
N28C33C32H1366.5°63.1°
N28C33H14H15119.5°120.1°
C33N28C29H26167.1°61.3°
C33N28C29H2773.1°178.6°
C9N13N12C110.6°0.1°
N13C9C6H172.6°0.0°
C9N13N12H19179.4°180.0°
C14C11N12N13174.3°180.0°
C14C11N12H195.6°0.1°
O20C14C11N1276.0°174.4°
C11N12N13H19180.0°179.9°
C30O31C32C3361.9°58.7°
O31C30H10H11119.2°120.1°
C30O31C32H12177.9°178.6°
C30O31C32H1358.4°61.2°
O31C30C29H26173.3°63.0°
O31C30C29H2766.9°176.8°
C33C32O31H12120.3°119.9°
C33C32O31H13120.3°120.0°
C33C32H12H13119.1°120.1°
C32C33H14H15119.5°120.1°
C32O31C30H1058.7°61.2°
C32O31C30H11178.2°178.6°
O31C32H12H13119.0°120.1°
O31C32C33H1466.4°176.7°
O31C32C33H15173.9°63.1°
H1C16C17H2026.9°23.2°
H1C16C17H2194.3°99.9°
H2C16C17H20148.8°144.3°
H2C16C17H2127.6°21.2°
H3C19C18H2222.0°37.8°
H3C19C18H2399.0°86.0°
H4C19C18H22143.7°160.0°
H4C19C18H2322.7°36.2°
H5C22C25H240.4°0.0°
H6C24C26H250.3°0.1°
H7C27H8H9120.0°120.0°
H10C30C29H2653.0°177.0°
H10C30C29H27172.8°56.9°
H11C30C29H2666.4°56.9°
H11C30C29H2753.4°63.3°
H12C32C33H1453.9°63.3°
H12C32C33H1565.8°56.8°
H13C32C33H14173.3°56.8°
H13C32C33H1553.6°176.9°
H20C17C18H22152.2°159.1°
H20C17C18H2331.2°35.2°
H21C17C18H2231.1°35.9°
H21C17C18H2389.9°88.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon