English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

98B

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	C	sing	1.47Å	1.45Å
C	C7	sing	1.53Å	1.53Å
C	C1	sing	1.51Å	1.50Å
C2	C1	doub	1.38Å	1.39Å	Aromatic
C2	C3	sing	1.38Å	1.40Å	Aromatic
C1	C6	sing	1.38Å	1.40Å	Aromatic
C3	C4	doub	1.38Å	1.40Å	Aromatic
C6	C5	doub	1.38Å	1.40Å	Aromatic
C4	C5	sing	1.38Å	1.38Å	Aromatic
N	H1	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
C	H4	sing	1.09Å	1.10Å
C7	H5	sing	1.09Å	1.10Å
C7	H6	sing	1.09Å	1.10Å
C7	H7	sing	1.09Å	1.10Å
C2	H8	sing	1.08Å	1.08Å
C3	H9	sing	1.08Å	1.08Å
C4	H10	sing	1.08Å	1.08Å
C5	H11	sing	1.08Å	1.08Å
C6	H12	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	C	C7	111.1°	109.4°
N	C	C1	111.8°	109.4°
C	N	H1	109.5°	111.0°
C	N	H2	109.5°	111.0°
N	C	H4	107.4°	109.5°
C7	C	C1	112.9°	109.5°
C7	C	H4	106.4°	109.5°
C	C7	H5	109.5°	109.5°
C	C7	H6	109.4°	109.5°
C	C7	H7	109.5°	109.5°
C	C1	C2	119.5°	120.1°
C	C1	C6	121.5°	120.0°
C1	C	H4	106.8°	109.5°
C1	C2	C3	119.7°	120.0°
C2	C1	C6	118.9°	120.0°
C1	C2	H8	120.2°	119.9°
C2	C3	C4	121.0°	120.0°
C3	C2	H8	120.1°	120.0°
C2	C3	H9	119.5°	120.0°
C1	C6	C5	121.3°	120.0°
C1	C6	H12	119.4°	120.0°
C3	C4	C5	119.2°	120.0°
C4	C3	H9	119.5°	120.0°
C3	C4	H10	120.4°	120.0°
C6	C5	C4	119.9°	120.0°
C6	C5	H11	120.0°	120.0°
C5	C6	H12	119.4°	120.0°
C5	C4	H10	120.4°	120.0°
C4	C5	H11	120.1°	120.0°
H1	N	H2	109.4°	111.0°
H5	C7	H6	109.5°	109.5°
H5	C7	H7	109.4°	109.5°
H6	C7	H7	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	C	C7	C1	126.6°	120.0°
N	C	C7	H4	116.6°	120.0°
N	C	C1	H4	117.2°	120.0°
N	C	C1	C2	37.3°	39.7°
N	C	C1	C6	145.6°	140.0°
C	N	H1	H2	120.0°	124.0°
N	C	C7	H5	180.0°	60.0°
N	C	C7	H6	60.0°	180.0°
N	C	C7	H7	60.0°	60.0°
C7	C	C1	H4	116.6°	120.1°
C7	C	C1	C2	163.4°	80.2°
C7	C	C1	C6	19.4°	100.0°
C7	C	N	H1	180.0°	176.0°
C7	C	N	H2	60.0°	60.0°
C	C7	H5	H6	120.0°	120.0°
C	C7	H5	H7	120.0°	120.0°
C	C7	H6	H7	120.0°	120.0°
C	C1	C2	C6	177.2°	179.7°
C	C1	C2	C3	178.1°	180.0°
C	C1	C6	C5	177.7°	179.8°
C1	C	N	H1	52.9°	64.0°
C1	C	N	H2	67.1°	60.0°
C1	C	C7	H5	53.4°	60.0°
C1	C	C7	H6	173.5°	60.0°
C1	C	C7	H7	66.5°	180.0°
C	C1	C2	H8	1.9°	0.0°
C	C1	C6	H12	2.3°	0.0°
C1	C2	C3	H8	180.0°	180.0°
C1	C2	C3	C4	0.7°	0.0°
C2	C1	C6	C5	0.5°	0.5°
C2	C1	C	H4	79.9°	159.7°
C1	C2	C3	H9	179.3°	179.9°
C2	C1	C6	H12	179.5°	179.7°
C3	C2	C1	C6	0.9°	0.3°
C2	C3	C4	H9	180.0°	180.0°
C2	C3	C4	C5	0.2°	0.0°
C2	C3	C4	H10	179.8°	179.9°
C1	C6	C5	H12	180.0°	179.8°
C1	C6	C5	C4	0.0°	0.4°
C6	C1	C	H4	97.2°	20.0°
C6	C1	C2	H8	179.2°	179.7°
C1	C6	C5	H11	180.0°	179.7°
C3	C4	C5	C6	0.1°	0.2°
C3	C4	C5	H10	180.0°	179.9°
C4	C3	C2	H8	179.3°	179.9°
C3	C4	C5	H11	179.9°	179.9°
C6	C5	C4	H11	180.0°	179.9°
C6	C5	C4	H10	179.9°	179.9°
C5	C4	C3	H9	179.8°	180.0°
C4	C5	C6	H12	180.0°	179.8°
H1	N	C	H4	64.0°	56.0°
H2	N	C	H4	176.0°	180.0°
H4	C	C7	H5	63.4°	180.0°
H4	C	C7	H6	56.6°	60.0°
H4	C	C7	H7	176.6°	60.0°
H5	C7	H6	H7	120.0°	120.0°
H8	C2	C3	H9	0.7°	0.1°
H9	C3	C4	H10	0.2°	0.1°
H10	C4	C5	H11	0.2°	0.0°
H11	C5	C6	H12	0.0°	0.1°

225399

PDB entries from 2024-09-25

PDB statistics

PDBj update info

Contact PDBj

numon