93D

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N4	C4	sing	1.38Å	1.37Å
C4	N3	doub	1.32Å	1.34Å	Aromatic
C4	N5	sing	1.33Å	1.50Å	Aromatic
N3	C2	sing	1.33Å	1.34Å	Aromatic
N5	C6	doub	1.32Å	1.49Å	Aromatic
C2	N2	sing	1.38Å	1.37Å
C2	C1	doub	1.40Å	1.35Å	Aromatic
C6	C1	sing	1.38Å	1.34Å	Aromatic
C1	C1'	sing	1.51Å	1.48Å
C1'	O4'	sing	1.44Å	1.42Å
C1'	C2'	sing	1.54Å	1.51Å
O4'	C4'	sing	1.44Å	1.46Å
C2'	C3'	sing	1.55Å	1.52Å
OP3	P	sing	1.61Å	1.49Å
C4'	C5'	sing	1.53Å	1.50Å
C4'	C3'	sing	1.54Å	1.53Å
P	O5'	sing	1.61Å	1.58Å
P	OP2	sing	1.61Å	1.49Å
O5'	C5'	sing	1.43Å	1.43Å
C3'	O3'	sing	1.43Å	1.43Å
OP2	HOP2	sing	0.97Å	0.95Å
C5'	H2	sing	1.09Å	1.10Å
C5'	H3	sing	1.09Å	1.10Å
C4'	H4	sing	1.09Å	1.10Å
C3'	H5	sing	1.09Å	1.10Å
O3'	H6	sing	0.97Å	0.95Å
C2'	H7	sing	1.09Å	1.10Å
C2'	H8	sing	1.09Å	1.10Å
C1'	H9	sing	1.09Å	1.10Å
C6	H10	sing	1.08Å	1.08Å
N2	H11	sing	0.97Å	1.00Å
N2	H12	sing	0.97Å	1.00Å
N4	H13	sing	0.97Å	1.00Å
N4	H14	sing	0.97Å	1.00Å
OP3	HOP3	sing	0.97Å	0.95Å
P	OP1	doub	1.48Å	36.44Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N4	C4	N3	118.3°	119.2°
N4	C4	N5	120.6°	119.1°
C4	N4	H13	109.5°	120.0°
C4	N4	H14	109.5°	120.0°
N3	C4	N5	121.1°	121.7°
C4	N3	C2	119.3°	120.6°
C4	N5	C6	112.5°	120.9°
N3	C2	N2	115.2°	120.5°
N3	C2	C1	126.5°	119.0°
N5	C6	C1	122.7°	119.3°
N5	C6	H10	118.6°	120.3°
N2	C2	C1	118.3°	120.5°
C2	N2	H11	109.5°	120.0°
C2	N2	H12	109.5°	120.0°
C2	C1	C6	117.9°	118.5°
C2	C1	C1'	118.3°	120.7°
C6	C1	C1'	123.8°	120.8°
C1	C6	H10	118.6°	120.4°
C1	C1'	O4'	108.6°	110.4°
C1	C1'	C2'	114.8°	110.4°
C1	C1'	H9	110.3°	110.4°
O4'	C1'	C2'	102.0°	104.8°
C1'	O4'	C4'	107.7°	105.3°
O4'	C1'	H9	111.2°	110.3°
C1'	C2'	C3'	101.4°	104.1°
C1'	C2'	H7	111.5°	110.5°
C1'	C2'	H8	111.5°	110.6°
C2'	C1'	H9	109.8°	110.4°
O4'	C4'	C5'	112.3°	110.4°
O4'	C4'	C3'	106.1°	104.8°
O4'	C4'	H4	110.0°	110.5°
C2'	C3'	C4'	102.4°	104.1°
C2'	C3'	O3'	116.9°	110.5°
C2'	C3'	H5	109.2°	110.6°
C3'	C2'	H7	111.4°	110.4°
C3'	C2'	H8	111.4°	110.5°
OP3	P	O5'	113.5°	109.4°
OP3	P	OP2	120.4°	109.5°
P	OP3	HOP3	109.5°	114.0°
OP3	P	OP1	83.1°	109.5°
C5'	C4'	C3'	110.0°	110.4°
C4'	C5'	O5'	108.0°	109.5°
C4'	C5'	H2	109.9°	109.5°
C4'	C5'	H3	109.8°	109.5°
C5'	C4'	H4	109.3°	110.3°
C4'	C3'	O3'	108.2°	110.5°
C3'	C4'	H4	109.0°	110.4°
C4'	C3'	H5	109.2°	110.5°
O5'	P	OP2	102.4°	109.5°
P	O5'	C5'	116.4°	123.0°
O5'	P	OP1	49.9°	109.5°
P	OP2	HOP2	109.5°	114.0°
OP2	P	OP1	151.3°	109.5°
O5'	C5'	H2	109.9°	109.5°
O5'	C5'	H3	109.8°	109.5°
O3'	C3'	H5	110.5°	110.4°
C3'	O3'	H6	109.5°	114.0°
H2	C5'	H3	109.5°	109.5°
H7	C2'	H8	109.5°	110.5°
H11	N2	H12	109.4°	119.9°
H13	N4	H14	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N4	C4	N3	N5	179.8°	179.6°
N4	C4	N3	C2	179.8°	180.0°
N4	C4	N5	C6	179.9°	179.7°
C4	N4	H13	H14	120.0°	180.0°
N3	C4	N5	C6	0.2°	0.0°
C4	N3	C2	N2	179.9°	179.9°
C4	N3	C2	C1	0.0°	0.6°
N3	C4	N4	H13	0.0°	0.0°
N3	C4	N4	H14	120.0°	180.0°
N5	C4	N3	C2	0.0°	0.3°
C4	N5	C6	C1	0.3°	0.0°
C4	N5	C6	H10	179.7°	180.0°
N5	C4	N4	H13	179.7°	179.7°
N5	C4	N4	H14	59.7°	0.3°
N3	C2	N2	C1	179.9°	179.5°
N3	C2	C1	C6	0.1°	0.5°
N3	C2	C1	C1'	179.8°	179.8°
N3	C2	N2	H11	0.0°	0.0°
N3	C2	N2	H12	120.0°	180.0°
N5	C6	C1	C2	0.3°	0.2°
N5	C6	C1	H10	180.0°	180.0°
N5	C6	C1	C1'	179.7°	179.9°
N2	C2	C1	C6	179.8°	180.0°
N2	C2	C1	C1'	0.3°	0.3°
C2	N2	H11	H12	120.0°	179.9°
C2	C1	C6	C1'	179.9°	179.7°
C2	C1	C1'	O4'	102.2°	156.7°
C2	C1	C1'	C2'	144.4°	87.9°
C2	C1	C1'	H9	19.8°	34.5°
C2	C1	C6	H10	179.7°	179.8°
C1	C2	N2	H11	179.9°	179.5°
C1	C2	N2	H12	59.9°	0.5°
C6	C1	C1'	O4'	77.7°	23.6°
C6	C1	C1'	C2'	35.7°	91.8°
C6	C1	C1'	H9	160.3°	145.8°
C1	C1'	O4'	C2'	121.5°	118.8°
C1	C1'	O4'	H9	121.5°	122.3°
C1	C1'	C2'	H9	124.9°	122.4°
C1	C1'	O4'	C4'	159.9°	159.3°
C1	C1'	C2'	C3'	162.3°	142.8°
C1	C1'	C2'	H7	79.0°	24.2°
C1	C1'	C2'	H8	43.7°	98.5°
C1'	C1	C6	H10	0.3°	0.0°
O4'	C1'	C2'	H9	118.0°	118.8°
O4'	C1'	C2'	C3'	45.2°	24.0°
C1'	O4'	C4'	C5'	136.3°	159.3°
C1'	O4'	C4'	C3'	16.1°	40.5°
C1'	O4'	C4'	H4	101.7°	78.4°
O4'	C1'	C2'	H7	163.8°	94.6°
O4'	C1'	C2'	H8	73.5°	142.6°
C2'	C1'	O4'	C4'	38.3°	40.5°
C1'	C2'	C3'	H7	118.7°	118.6°
C1'	C2'	C3'	H8	118.7°	118.8°
C1'	C2'	C3'	C4'	34.7°	0.0°
C1'	C2'	C3'	O3'	83.3°	118.6°
C1'	C2'	C3'	H5	150.3°	118.7°
C1'	C2'	H7	H8	123.8°	122.8°
O4'	C4'	C3'	C2'	12.7°	24.0°
O4'	C4'	C5'	C3'	117.9°	115.4°
O4'	C4'	C5'	H4	122.4°	122.3°
O4'	C4'	C3'	H4	118.4°	119.0°
O4'	C4'	C5'	O5'	78.2°	69.6°
O4'	C4'	C3'	O3'	111.3°	142.6°
O4'	C4'	C5'	H2	41.6°	50.4°
O4'	C4'	C5'	H3	162.1°	170.4°
O4'	C4'	C3'	H5	128.4°	94.8°
C4'	O4'	C1'	H9	78.7°	78.4°
C2'	C3'	C4'	C5'	109.0°	142.8°
C2'	C3'	C4'	O3'	124.0°	118.6°
C2'	C3'	C4'	H5	115.7°	118.8°
C2'	C3'	O3'	H5	125.7°	122.8°
C2'	C3'	C4'	H4	131.1°	95.0°
C2'	C3'	O3'	H6	180.0°	65.4°
C3'	C2'	H7	H8	123.7°	122.6°
C3'	C2'	C1'	H9	72.8°	94.9°
OP3	P	O5'	OP2	131.3°	120.0°
OP3	P	O5'	OP1	57.4°	120.0°
OP3	P	OP2	OP1	141.1°	120.0°
OP3	P	O5'	C5'	166.1°	65.0°
OP3	P	OP2	HOP2	180.0°	60.0°
C5'	C4'	C3'	H4	119.9°	122.2°
C4'	C5'	O5'	P	150.7°	180.0°
C4'	C5'	O5'	H2	119.8°	120.0°
C4'	C5'	O5'	H3	119.7°	120.0°
C5'	C4'	C3'	O3'	127.0°	98.5°
C4'	C5'	H2	H3	120.7°	120.0°
C5'	C4'	C3'	H5	6.7°	24.0°
C3'	C4'	C5'	O5'	39.7°	175.0°
C4'	C3'	O3'	H5	119.4°	122.6°
C3'	C4'	C5'	H2	159.5°	65.0°
C3'	C4'	C5'	H3	80.0°	55.0°
C4'	C3'	O3'	H6	65.2°	180.0°
C4'	C3'	C2'	H7	153.3°	118.6°
C4'	C3'	C2'	H8	84.0°	118.8°
O5'	P	OP2	OP1	14.0°	120.0°
O5'	P	OP2	HOP2	52.9°	179.9°
P	O5'	C5'	H2	30.9°	60.0°
P	O5'	C5'	H3	89.5°	60.0°
O5'	P	OP3	HOP3	180.0°	60.0°
OP2	P	O5'	C5'	62.6°	175.0°
OP2	P	OP3	HOP3	58.2°	59.9°
O5'	C5'	H2	H3	120.7°	120.0°
O5'	C5'	C4'	H4	159.5°	52.8°
C5'	O5'	P	OP1	108.7°	55.0°
O3'	C3'	C4'	H4	7.1°	23.7°
O3'	C3'	C2'	H7	35.3°	122.7°
O3'	C3'	C2'	H8	157.9°	0.1°
HOP2	OP2	P	OP1	38.9°	60.1°
H2	C5'	C4'	H4	80.8°	172.8°
H3	C5'	C4'	H4	39.7°	67.3°
H4	C4'	C3'	H5	113.2°	146.2°
H5	C3'	O3'	H6	54.3°	57.4°
H5	C3'	C2'	H7	91.0°	0.1°
H5	C3'	C2'	H8	31.6°	122.5°
H7	C2'	C1'	H9	45.9°	146.6°
H8	C2'	C1'	H9	168.5°	23.8°
HOP3	OP3	P	OP1	139.5°	180.0°

Release date:	2018-03-07
Definition date:	2017-03-31
Last modified:	2018-03-02
Release status:	REL
Processing site:	RCSB
Derived from:	5VBS