92F
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2 | C2 | doub | 1.22Å | 1.26Å | |
N3 | C2 | sing | 1.33Å | 1.36Å | |
N3 | C4 | doub | 1.34Å | 1.35Å | |
N23 | C4 | sing | 1.33Å | 1.36Å | |
N23 | C22 | doub | 1.32Å | 1.37Å | |
N26 | C22 | sing | 1.38Å | 1.37Å | |
C2 | N1 | sing | 1.34Å | 1.43Å | |
C4 | C5 | sing | 1.47Å | 1.49Å | |
C22 | C21 | sing | 1.42Å | 1.50Å | |
N1 | C1' | sing | 1.46Å | 1.47Å | |
N1 | C6 | sing | 1.35Å | 1.35Å | |
C5 | C6 | doub | 1.39Å | 1.38Å | |
C5 | C20 | sing | 1.41Å | 1.39Å | |
C2' | C1' | sing | 1.54Å | 1.51Å | |
C2' | C3' | sing | 1.55Å | 1.50Å | |
C1' | O4' | sing | 1.44Å | 1.44Å | |
C21 | C20 | doub | 1.39Å | 1.39Å | |
C21 | C24 | sing | 1.43Å | 1.29Å | |
C24 | N25 | trip | 1.14Å | 1.17Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C4' | sing | 1.55Å | 1.52Å | |
O4' | C4' | sing | 1.44Å | 1.44Å | |
C4' | C5' | sing | 1.53Å | 1.53Å | |
C5' | O5' | sing | 1.43Å | 1.44Å | |
O5' | P | sing | 1.61Å | 1.62Å | |
P | OP1 | doub | 1.48Å | 1.52Å | |
P | OP2 | sing | 1.61Å | 1.50Å | |
OP2 | H2 | sing | 0.97Å | 0.95Å | |
C5' | H3 | sing | 1.09Å | 1.10Å | |
C5' | H4 | sing | 1.09Å | 1.10Å | |
C4' | H5 | sing | 1.09Å | 1.10Å | |
C3' | H6 | sing | 1.09Å | 1.10Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
C2' | H8 | sing | 1.09Å | 1.10Å | |
C1' | H9 | sing | 1.09Å | 1.10Å | |
C6 | H10 | sing | 1.08Å | 1.08Å | |
C20 | H13 | sing | 1.08Å | 1.08Å | |
N26 | H14 | sing | 0.97Å | 1.00Å | |
N26 | H15 | sing | 0.97Å | 1.00Å | |
O3' | H16 | sing | 0.97Å | 0.95Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
OP3 | H1 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2 | C2 | N3 | 119.5° | 118.5° |
O2 | C2 | N1 | 119.7° | 118.5° |
C2 | N3 | C4 | 120.9° | 120.3° |
N3 | C2 | N1 | 120.8° | 123.0° |
N3 | C4 | N23 | 121.8° | 122.0° |
N3 | C4 | C5 | 118.6° | 118.3° |
C4 | N23 | C22 | 121.6° | 121.4° |
N23 | C4 | C5 | 119.6° | 119.7° |
N23 | C22 | N26 | 119.6° | 118.9° |
N23 | C22 | C21 | 119.8° | 122.2° |
N26 | C22 | C21 | 120.6° | 118.9° |
C22 | N26 | H14 | 120.0° | 120.0° |
C22 | N26 | H15 | 120.0° | 120.0° |
C2 | N1 | C1' | 118.8° | 119.2° |
C2 | N1 | C6 | 120.5° | 121.6° |
C4 | C5 | C6 | 119.4° | 118.5° |
C4 | C5 | C20 | 120.2° | 118.9° |
C22 | C21 | C20 | 119.1° | 120.0° |
C22 | C21 | C24 | 121.3° | 120.0° |
C1' | N1 | C6 | 120.7° | 119.2° |
N1 | C1' | C2' | 108.1° | 109.9° |
N1 | C1' | O4' | 112.6° | 109.9° |
N1 | C1' | H9 | 109.5° | 110.0° |
N1 | C6 | C5 | 119.8° | 118.3° |
N1 | C6 | H10 | 120.1° | 120.9° |
C6 | C5 | C20 | 120.3° | 122.5° |
C5 | C6 | H10 | 120.1° | 120.9° |
C5 | C20 | C21 | 119.7° | 117.8° |
C5 | C20 | H13 | 120.1° | 121.1° |
C1' | C2' | C3' | 104.1° | 104.2° |
C2' | C1' | O4' | 107.5° | 107.2° |
C1' | C2' | H7 | 110.8° | 110.5° |
C1' | C2' | H8 | 110.8° | 110.5° |
C2' | C1' | H9 | 109.0° | 109.9° |
C2' | C3' | O3' | 107.7° | 110.9° |
C2' | C3' | C4' | 104.5° | 102.1° |
C2' | C3' | H6 | 110.7° | 110.9° |
C3' | C2' | H7 | 110.8° | 110.5° |
C3' | C2' | H8 | 110.8° | 110.5° |
C1' | O4' | C4' | 109.9° | 107.0° |
O4' | C1' | H9 | 110.0° | 109.9° |
C20 | C21 | C24 | 119.7° | 120.0° |
C21 | C20 | H13 | 120.1° | 121.1° |
C21 | C24 | N25 | 174.3° | 179.9° |
O3' | C3' | C4' | 111.4° | 110.9° |
O3' | C3' | H6 | 111.8° | 110.8° |
C3' | O3' | H16 | 109.5° | 114.0° |
C3' | C4' | O4' | 106.1° | 103.7° |
C3' | C4' | C5' | 113.5° | 110.6° |
C3' | C4' | H5 | 108.0° | 110.6° |
C4' | C3' | H6 | 110.4° | 110.9° |
O4' | C4' | C5' | 112.3° | 110.7° |
O4' | C4' | H5 | 109.0° | 110.6° |
C4' | C5' | O5' | 108.5° | 109.5° |
C4' | C5' | H3 | 109.7° | 109.4° |
C4' | C5' | H4 | 109.7° | 109.5° |
C5' | C4' | H5 | 107.8° | 110.5° |
C5' | O5' | P | 120.7° | 123.0° |
O5' | C5' | H3 | 109.7° | 109.5° |
O5' | C5' | H4 | 109.7° | 109.5° |
O5' | P | OP1 | 112.1° | 109.5° |
O5' | P | OP2 | 110.9° | 109.5° |
O5' | P | OP3 | 103.2° | 109.5° |
OP1 | P | OP2 | 112.3° | 109.5° |
OP1 | P | OP3 | 108.3° | 109.4° |
P | OP2 | H2 | 109.5° | 114.0° |
OP2 | P | OP3 | 109.6° | 109.5° |
H3 | C5' | H4 | 109.5° | 109.4° |
H7 | C2' | H8 | 109.5° | 110.5° |
H14 | N26 | H15 | 120.0° | 120.0° |
P | OP3 | H1 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2 | C2 | N3 | N1 | 178.7° | 179.9° |
O2 | C2 | N3 | C4 | 179.2° | 180.0° |
O2 | C2 | N1 | C1' | 0.6° | 0.1° |
O2 | C2 | N1 | C6 | 179.9° | 179.8° |
C2 | N3 | C4 | N23 | 179.8° | 180.0° |
C2 | N3 | C4 | C5 | 0.2° | 0.2° |
N3 | C2 | N1 | C1' | 179.3° | 180.0° |
N3 | C2 | N1 | C6 | 1.2° | 0.3° |
N3 | C4 | N23 | C5 | 179.6° | 179.8° |
N3 | C4 | N23 | C22 | 179.6° | 179.9° |
C4 | N3 | C2 | N1 | 0.5° | 0.1° |
N3 | C4 | C5 | C6 | 0.0° | 0.2° |
N3 | C4 | C5 | C20 | 179.6° | 180.0° |
C4 | N23 | C22 | N26 | 179.9° | 180.0° |
C4 | N23 | C22 | C21 | 0.3° | 0.1° |
N23 | C4 | C5 | C6 | 179.7° | 180.0° |
N23 | C4 | C5 | C20 | 0.0° | 0.2° |
N23 | C22 | N26 | C21 | 179.8° | 179.9° |
C22 | N23 | C4 | C5 | 0.0° | 0.2° |
N23 | C22 | C21 | C20 | 0.5° | 0.1° |
N23 | C22 | C21 | C24 | 179.9° | 180.0° |
N23 | C22 | N26 | H14 | 0.0° | 0.0° |
N23 | C22 | N26 | H15 | 180.0° | 180.0° |
N26 | C22 | C21 | C20 | 179.6° | 179.8° |
N26 | C22 | C21 | C24 | 0.0° | 0.1° |
C22 | N26 | H14 | H15 | 180.0° | 180.0° |
C2 | N1 | C1' | C6 | 179.5° | 179.7° |
C2 | N1 | C6 | C5 | 1.3° | 0.3° |
C2 | N1 | C1' | C2' | 77.6° | 65.3° |
C2 | N1 | C1' | O4' | 163.8° | 52.5° |
C2 | N1 | C1' | H9 | 41.1° | 173.6° |
C2 | N1 | C6 | H10 | 178.7° | 179.7° |
C4 | C5 | C6 | N1 | 0.7° | 0.1° |
C4 | C5 | C6 | C20 | 179.7° | 179.8° |
C4 | C5 | C20 | C21 | 0.3° | 0.0° |
C4 | C5 | C6 | H10 | 179.3° | 179.9° |
C4 | C5 | C20 | H13 | 179.7° | 179.9° |
C22 | C21 | C20 | C5 | 0.5° | 0.1° |
C22 | C21 | C20 | C24 | 179.6° | 179.9° |
C22 | C21 | C24 | N25 | 57.6° | 42.9° |
C22 | C21 | C20 | H13 | 179.5° | 179.8° |
C21 | C22 | N26 | H14 | 179.8° | 179.9° |
C21 | C22 | N26 | H15 | 0.2° | 0.1° |
C1' | N1 | C6 | C5 | 179.2° | 180.0° |
N1 | C1' | C2' | O4' | 121.8° | 119.4° |
N1 | C1' | C2' | H9 | 119.0° | 121.1° |
N1 | C1' | C2' | C3' | 101.8° | 121.5° |
N1 | C1' | O4' | H9 | 122.5° | 121.1° |
N1 | C1' | O4' | C4' | 115.0° | 145.8° |
N1 | C1' | C2' | H7 | 139.1° | 2.7° |
N1 | C1' | C2' | H8 | 17.4° | 119.8° |
C1' | N1 | C6 | H10 | 0.8° | 0.0° |
N1 | C6 | C5 | H10 | 180.0° | 180.0° |
N1 | C6 | C5 | C20 | 179.6° | 179.7° |
C6 | N1 | C1' | C2' | 101.9° | 115.0° |
C6 | N1 | C1' | O4' | 16.7° | 127.2° |
C6 | N1 | C1' | H9 | 139.5° | 6.1° |
C6 | C5 | C20 | C21 | 180.0° | 179.8° |
C6 | C5 | C20 | H13 | 0.0° | 0.3° |
C5 | C20 | C21 | H13 | 180.0° | 179.9° |
C5 | C20 | C21 | C24 | 179.9° | 179.9° |
C20 | C5 | C6 | H10 | 0.4° | 0.3° |
C1' | C2' | C3' | H7 | 119.1° | 118.7° |
C1' | C2' | C3' | H8 | 119.2° | 118.7° |
C2' | C1' | O4' | H9 | 118.6° | 119.4° |
C1' | C2' | C3' | O3' | 146.1° | 139.0° |
C1' | C2' | C3' | C4' | 27.6° | 20.8° |
C2' | C1' | O4' | C4' | 3.9° | 26.4° |
C1' | C2' | C3' | H6 | 91.3° | 97.5° |
C1' | C2' | H7 | H8 | 122.5° | 122.6° |
C3' | C2' | C1' | O4' | 20.0° | 2.0° |
C2' | C3' | O3' | C4' | 114.0° | 112.7° |
C2' | C3' | O3' | H6 | 121.9° | 123.6° |
C2' | C3' | C4' | H6 | 119.1° | 118.2° |
C2' | C3' | C4' | O4' | 25.9° | 36.9° |
C2' | C3' | C4' | C5' | 149.7° | 155.6° |
C2' | C3' | C4' | H5 | 90.8° | 81.6° |
C3' | C2' | H7 | H8 | 122.5° | 122.6° |
C3' | C2' | C1' | H9 | 139.3° | 117.4° |
C2' | C3' | O3' | H16 | 180.0° | 67.3° |
C1' | O4' | C4' | C3' | 13.8° | 40.0° |
C1' | O4' | C4' | C5' | 138.3° | 158.6° |
C1' | O4' | C4' | H5 | 102.3° | 78.6° |
O4' | C1' | C2' | H7 | 99.2° | 116.7° |
O4' | C1' | C2' | H8 | 139.1° | 120.8° |
C20 | C21 | C24 | N25 | 122.8° | 137.1° |
C24 | C21 | C20 | H13 | 0.1° | 0.1° |
O3' | C3' | C4' | H6 | 124.9° | 123.6° |
O3' | C3' | C4' | O4' | 142.0° | 155.1° |
O3' | C3' | C4' | C5' | 94.2° | 86.3° |
O3' | C3' | C4' | H5 | 25.2° | 36.6° |
O3' | C3' | C2' | H7 | 27.0° | 102.3° |
O3' | C3' | C2' | H8 | 94.7° | 20.3° |
C3' | C4' | O4' | C5' | 124.5° | 118.6° |
C3' | C4' | O4' | H5 | 116.1° | 118.6° |
C3' | C4' | C5' | H5 | 119.5° | 122.9° |
C3' | C4' | C5' | O5' | 164.0° | 177.2° |
C3' | C4' | C5' | H3 | 44.1° | 62.8° |
C3' | C4' | C5' | H4 | 76.2° | 57.1° |
C4' | C3' | C2' | H7 | 91.6° | 139.5° |
C4' | C3' | C2' | H8 | 146.7° | 97.9° |
C4' | C3' | O3' | H16 | 66.0° | 180.0° |
O4' | C4' | C5' | H5 | 120.1° | 122.9° |
O4' | C4' | C5' | O5' | 75.7° | 68.5° |
O4' | C4' | C5' | H3 | 164.4° | 51.5° |
O4' | C4' | C5' | H4 | 44.2° | 171.4° |
O4' | C4' | C3' | H6 | 93.1° | 81.3° |
C4' | O4' | C1' | H9 | 122.5° | 93.0° |
C4' | C5' | O5' | H3 | 119.8° | 120.0° |
C4' | C5' | O5' | H4 | 119.8° | 120.1° |
C4' | C5' | O5' | P | 162.4° | 180.0° |
C4' | C5' | H3 | H4 | 120.4° | 120.0° |
C5' | C4' | C3' | H6 | 30.7° | 37.4° |
C5' | O5' | P | OP1 | 34.4° | 55.0° |
C5' | O5' | P | OP2 | 160.7° | 65.0° |
O5' | C5' | H3 | H4 | 120.5° | 120.0° |
O5' | C5' | C4' | H5 | 44.4° | 54.3° |
C5' | O5' | P | OP3 | 81.9° | 175.0° |
O5' | P | OP1 | OP2 | 125.6° | 120.0° |
O5' | P | OP1 | OP3 | 113.2° | 120.0° |
O5' | P | OP2 | OP3 | 113.4° | 120.0° |
O5' | P | OP2 | H2 | 126.2° | 60.0° |
P | O5' | C5' | H3 | 42.5° | 60.0° |
P | O5' | C5' | H4 | 77.8° | 59.9° |
O5' | P | OP3 | H1 | 119.0° | 180.0° |
OP1 | P | OP2 | OP3 | 120.4° | 120.0° |
OP1 | P | OP2 | H2 | 0.0° | 180.0° |
OP1 | P | OP3 | H1 | 0.0° | 60.0° |
OP2 | P | OP3 | H1 | 122.8° | 60.0° |
H2 | OP2 | P | OP3 | 120.4° | 60.0° |
H3 | C5' | C4' | H5 | 75.4° | 174.3° |
H4 | C5' | C4' | H5 | 164.3° | 65.7° |
H5 | C4' | C3' | H6 | 150.1° | 160.2° |
H6 | C3' | C2' | H7 | 149.6° | 21.3° |
H6 | C3' | C2' | H8 | 27.9° | 143.9° |
H6 | C3' | O3' | H16 | 58.1° | 56.3° |
H7 | C2' | C1' | H9 | 20.1° | 123.9° |
H8 | C2' | C1' | H9 | 101.6° | 1.3° |