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Summary Geometry Related PDB entries

911

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	P1	doub	1.48Å	1.56Å
P1	O5	sing	1.61Å	1.50Å
P1	C7	sing	1.82Å	1.82Å
P1	O3	sing	1.61Å	1.56Å
O3	HO3	sing	0.97Å	0.95Å
O5	HO5	sing	0.97Å	0.95Å
C16	C7	sing	1.53Å	1.50Å
C7	O14	sing	1.43Å	1.38Å
C7	P8	sing	1.82Å	1.82Å
P8	O9	doub	1.48Å	1.51Å
P8	O10	sing	1.61Å	1.56Å
P8	O12	sing	1.61Å	1.56Å
O10	HO10	sing	0.97Å	0.95Å
O12	HO12	sing	0.97Å	0.95Å
O14	HO14	sing	0.97Å	0.95Å
C16	H16	sing	1.09Å	1.10Å
C16	H16A	sing	1.09Å	1.10Å
C16	H16B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	P1	O5	112.1°	109.5°
O2	P1	C7	108.5°	109.5°
O2	P1	O3	107.8°	109.5°
O5	P1	C7	111.2°	109.5°
O5	P1	O3	111.1°	109.5°
P1	O5	HO5	109.5°	114.0°
C7	P1	O3	105.8°	109.4°
P1	C7	C16	110.6°	109.5°
P1	C7	O14	108.3°	109.5°
P1	C7	P8	109.1°	109.4°
P1	O3	HO3	109.5°	113.9°
C16	C7	O14	110.5°	109.5°
C16	C7	P8	111.1°	109.4°
C7	C16	H16	109.5°	109.5°
C7	C16	H16A	109.5°	109.5°
C7	C16	H16B	109.5°	109.4°
O14	C7	P8	107.2°	109.5°
C7	O14	HO14	109.5°	114.0°
C7	P8	O9	112.8°	109.5°
C7	P8	O10	107.0°	109.4°
C7	P8	O12	104.8°	109.4°
O9	P8	O10	111.7°	109.5°
O9	P8	O12	111.8°	109.5°
O10	P8	O12	108.3°	109.5°
P8	O10	HO10	109.5°	114.1°
P8	O12	HO12	109.5°	114.0°
H16	C16	H16A	109.5°	109.5°
H16	C16	H16B	109.5°	109.4°
H16A	C16	H16B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	P1	O5	C7	121.7°	120.0°
O2	P1	O5	O3	120.7°	120.0°
O2	P1	C7	O3	115.5°	120.0°
O2	P1	O3	HO3	0.0°	60.1°
O2	P1	O5	HO5	0.0°	180.0°
O2	P1	C7	C16	51.7°	180.0°
O2	P1	C7	O14	69.5°	60.0°
O2	P1	C7	P8	174.1°	60.0°
O5	P1	C7	O3	120.8°	120.0°
O5	P1	O3	HO3	123.2°	60.0°
O5	P1	C7	C16	72.1°	59.9°
O5	P1	C7	O14	166.7°	180.0°
O5	P1	C7	P8	50.4°	60.0°
C7	P1	O3	HO3	116.0°	179.9°
C7	P1	O5	HO5	121.7°	60.0°
P1	C7	C16	O14	119.9°	120.0°
P1	C7	C16	P8	121.3°	119.9°
P1	C7	O14	P8	117.5°	120.0°
P1	C7	P8	O9	53.2°	55.0°
P1	C7	P8	O10	176.5°	65.0°
P1	C7	P8	O12	68.7°	175.0°
P1	C7	O14	HO14	180.0°	60.0°
P1	C7	C16	H16	180.0°	59.9°
P1	C7	C16	H16A	60.0°	180.0°
P1	C7	C16	H16B	60.0°	60.0°
O3	P1	O5	HO5	120.7°	60.0°
O3	P1	C7	C16	167.1°	60.1°
O3	P1	C7	O14	45.9°	60.0°
O3	P1	C7	P8	70.4°	180.0°
C16	C7	O14	P8	121.2°	120.0°
C16	C7	P8	O9	69.0°	65.0°
C16	C7	P8	O10	54.3°	175.0°
C16	C7	P8	O12	169.1°	55.0°
C16	C7	O14	HO14	58.7°	179.9°
C7	C16	H16	H16A	120.0°	120.0°
C7	C16	H16	H16B	120.0°	119.9°
C7	C16	H16A	H16B	120.0°	119.9°
O14	C7	P8	O9	170.2°	175.0°
O14	C7	P8	O10	66.5°	55.0°
O14	C7	P8	O12	48.3°	65.0°
O14	C7	C16	H16	60.1°	180.0°
O14	C7	C16	H16A	179.9°	60.0°
O14	C7	C16	H16B	59.9°	60.0°
C7	P8	O9	O10	120.6°	120.0°
C7	P8	O9	O12	117.8°	120.0°
C7	P8	O10	O12	112.5°	119.9°
C7	P8	O10	HO10	124.0°	60.0°
C7	P8	O12	HO12	122.5°	180.0°
P8	C7	O14	HO14	62.5°	60.0°
P8	C7	C16	H16	58.7°	60.0°
P8	C7	C16	H16A	61.3°	60.1°
P8	C7	C16	H16B	178.7°	180.0°
O9	P8	O10	O12	123.5°	120.0°
O9	P8	O10	HO10	0.0°	180.0°
O9	P8	O12	HO12	0.0°	60.0°
O10	P8	O12	HO12	123.5°	60.0°
O12	P8	O10	HO10	123.5°	60.0°
H16	C16	H16A	H16B	120.0°	120.0°

222415

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