English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

8ZX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C6	C3	doub	1.38Å	1.40Å	Aromatic
C6	C7	sing	1.39Å	1.39Å	Aromatic
O2	C7	sing	1.36Å	1.40Å
O2	C8	sing	1.43Å	1.43Å
C3	C1	sing	1.40Å	1.38Å	Aromatic
C7	C5	doub	1.39Å	1.38Å	Aromatic
N1	C4	sing	1.35Å	1.34Å
C1	C4	sing	1.48Å	1.50Å
C1	C2	doub	1.40Å	1.39Å	Aromatic
C5	C2	sing	1.38Å	1.41Å	Aromatic
C4	O1	doub	1.22Å	1.23Å
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
C3	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C8	H5	sing	1.09Å	1.10Å
C8	H6	sing	1.09Å	1.10Å
C8	H7	sing	1.09Å	1.10Å
C5	H8	sing	1.08Å	1.08Å
C2	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C3	C6	C7	121.6°	120.1°
C6	C3	C1	120.2°	119.9°
C6	C3	H3	119.9°	120.0°
C3	C6	H4	119.2°	119.9°
C6	C7	O2	121.2°	119.9°
C6	C7	C5	118.1°	120.2°
C7	C6	H4	119.2°	120.0°
C7	O2	C8	125.1°	117.0°
O2	C7	C5	120.7°	119.9°
O2	C8	H5	109.5°	109.5°
O2	C8	H6	109.5°	109.5°
O2	C8	H7	109.5°	109.5°
C3	C1	C4	122.4°	120.1°
C3	C1	C2	118.3°	119.8°
C1	C3	H3	119.9°	120.1°
C7	C5	C2	120.6°	120.1°
C7	C5	H8	119.7°	120.0°
N1	C4	C1	120.4°	120.0°
N1	C4	O1	122.9°	120.0°
C4	N1	H1	120.0°	120.0°
C4	N1	H2	120.0°	120.0°
C4	C1	C2	119.2°	120.1°
C1	C4	O1	116.7°	120.0°
C1	C2	C5	121.1°	119.9°
C1	C2	H9	119.4°	120.0°
C2	C5	H8	119.7°	120.0°
C5	C2	H9	119.4°	120.0°
H1	N1	H2	120.0°	120.0°
H5	C8	H6	109.5°	109.5°
H5	C8	H7	109.5°	109.4°
H6	C8	H7	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C3	C6	C7	H4	180.0°	179.9°
C3	C6	C7	O2	179.9°	180.0°
C6	C3	C1	H3	180.0°	179.9°
C3	C6	C7	C5	0.3°	0.0°
C6	C3	C1	C4	178.8°	180.0°
C6	C3	C1	C2	0.8°	0.3°
C6	C7	O2	C5	179.8°	180.0°
C6	C7	O2	C8	152.1°	180.0°
C7	C6	C3	C1	0.2°	0.0°
C6	C7	C5	C2	0.5°	0.2°
C7	C6	C3	H3	179.8°	179.9°
C6	C7	C5	H8	179.5°	179.9°
O2	C7	C5	C2	179.3°	179.7°
O2	C7	C6	H4	0.1°	0.1°
C7	O2	C8	H5	180.0°	60.0°
C7	O2	C8	H6	60.0°	60.0°
C7	O2	C8	H7	60.0°	180.0°
O2	C7	C5	H8	0.7°	0.0°
C8	O2	C7	C5	28.1°	0.0°
O2	C8	H5	H6	120.0°	120.1°
O2	C8	H5	H7	120.0°	120.0°
O2	C8	H6	H7	120.0°	120.0°
C3	C1	C4	N1	0.3°	0.1°
C3	C1	C4	C2	178.1°	179.6°
C3	C1	C2	C5	1.5°	0.6°
C3	C1	C4	O1	178.6°	179.7°
C1	C3	C6	H4	179.8°	179.9°
C3	C1	C2	H9	178.4°	179.7°
C7	C5	C2	C1	1.4°	0.6°
C7	C5	C2	H8	180.0°	179.7°
C5	C7	C6	H4	179.7°	180.0°
C7	C5	C2	H9	178.6°	179.8°
N1	C4	C1	O1	178.2°	179.8°
N1	C4	C1	C2	177.7°	179.7°
C4	N1	H1	H2	180.0°	179.9°
C4	C1	C2	C5	179.7°	179.8°
C1	C4	N1	H1	178.1°	179.7°
C1	C4	N1	H2	1.9°	0.2°
C4	C1	C3	H3	1.2°	0.1°
C4	C1	C2	H9	0.3°	0.1°
C1	C2	C5	H9	180.0°	179.6°
C2	C1	C4	O1	0.5°	0.1°
C2	C1	C3	H3	179.3°	179.8°
C1	C2	C5	H8	178.6°	179.8°
O1	C4	N1	H1	0.0°	0.1°
O1	C4	N1	H2	180.0°	180.0°
H3	C3	C6	H4	0.2°	0.0°
H5	C8	H6	H7	120.0°	119.9°
H8	C5	C2	H9	1.5°	0.1°

223166

PDB entries from 2024-07-31

PDB statistics

PDBj update info

Contact PDBj

numon