8YV
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3 | C3 | sing | 1.43Å | 1.41Å | |
| O4 | C4 | sing | 1.43Å | 1.43Å | |
| C3 | C4 | sing | 1.53Å | 1.54Å | |
| C3 | C2 | sing | 1.51Å | 1.53Å | |
| C4 | C5 | sing | 1.53Å | 1.53Å | |
| O1A | C1 | doub | 1.21Å | 1.22Å | |
| C2 | C1 | sing | 1.49Å | 1.53Å | |
| C2 | O2 | doub | 1.21Å | 1.21Å | |
| C1 | O1B | sing | 1.35Å | 1.29Å | |
| C5 | C6 | sing | 1.53Å | 1.51Å | |
| C5 | O5 | sing | 1.43Å | 1.43Å | |
| C6 | O6 | sing | 1.43Å | 1.42Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| O1B | HO1B | sing | 0.97Å | 0.95Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| O5 | HO5 | sing | 0.97Å | 0.95Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| O6 | HO6 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3 | C3 | C4 | 110.8° | 109.5° |
| O3 | C3 | C2 | 107.2° | 109.5° |
| O3 | C3 | H3 | 111.0° | 109.5° |
| C3 | O3 | HO3 | 109.5° | 114.1° |
| O4 | C4 | C3 | 109.3° | 109.5° |
| O4 | C4 | C5 | 110.8° | 109.4° |
| O4 | C4 | H4 | 110.0° | 109.5° |
| C4 | O4 | HO4 | 109.5° | 114.0° |
| C4 | C3 | C2 | 109.5° | 109.4° |
| C3 | C4 | C5 | 109.5° | 109.5° |
| C3 | C4 | H4 | 108.5° | 109.5° |
| C4 | C3 | H3 | 109.1° | 109.5° |
| C3 | C2 | C1 | 116.8° | 120.0° |
| C3 | C2 | O2 | 120.6° | 120.0° |
| C2 | C3 | H3 | 109.2° | 109.5° |
| C4 | C5 | C6 | 114.7° | 109.5° |
| C4 | C5 | O5 | 109.0° | 109.4° |
| C5 | C4 | H4 | 108.6° | 109.5° |
| C4 | C5 | H5 | 108.2° | 109.5° |
| O1A | C1 | C2 | 122.1° | 120.0° |
| O1A | C1 | O1B | 124.8° | 120.0° |
| C1 | C2 | O2 | 122.6° | 120.0° |
| C2 | C1 | O1B | 113.1° | 120.0° |
| C1 | O1B | HO1B | 109.5° | 117.0° |
| C6 | C5 | O5 | 106.8° | 109.5° |
| C5 | C6 | O6 | 108.5° | 109.5° |
| C6 | C5 | H5 | 108.5° | 109.5° |
| C5 | C6 | H61 | 109.7° | 109.5° |
| C5 | C6 | H62 | 109.7° | 109.5° |
| O5 | C5 | H5 | 109.6° | 109.5° |
| C5 | O5 | HO5 | 109.5° | 114.0° |
| O6 | C6 | H61 | 109.7° | 109.4° |
| O6 | C6 | H62 | 109.7° | 109.5° |
| C6 | O6 | HO6 | 109.5° | 114.0° |
| H61 | C6 | H62 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3 | C3 | C4 | O4 | 75.4° | 65.0° |
| O3 | C3 | C4 | C2 | 118.0° | 120.0° |
| O3 | C3 | C4 | H3 | 122.5° | 120.0° |
| O3 | C3 | C2 | H3 | 120.3° | 120.1° |
| O3 | C3 | C4 | C5 | 163.0° | 55.0° |
| O3 | C3 | C2 | C1 | 50.2° | 165.0° |
| O3 | C3 | C2 | O2 | 131.5° | 14.9° |
| O3 | C3 | C4 | H4 | 44.6° | 175.0° |
| O4 | C4 | C3 | C5 | 121.6° | 120.0° |
| O4 | C4 | C3 | H4 | 120.0° | 120.0° |
| O4 | C4 | C3 | C2 | 166.6° | 55.0° |
| O4 | C4 | C5 | H4 | 120.9° | 120.0° |
| O4 | C4 | C5 | C6 | 56.0° | 60.0° |
| O4 | C4 | C5 | O5 | 175.6° | 180.0° |
| O4 | C4 | C3 | H3 | 47.1° | 175.0° |
| O4 | C4 | C5 | H5 | 65.3° | 60.0° |
| C4 | C3 | C2 | H3 | 119.4° | 119.9° |
| C3 | C4 | C5 | H4 | 118.4° | 120.0° |
| C4 | C3 | C2 | C1 | 70.1° | 75.0° |
| C4 | C3 | C2 | O2 | 108.2° | 105.1° |
| C3 | C4 | C5 | C6 | 176.7° | 180.0° |
| C3 | C4 | C5 | O5 | 63.7° | 60.0° |
| C3 | C4 | O4 | HO4 | 180.0° | 60.0° |
| C4 | C3 | O3 | HO3 | 85.9° | 60.0° |
| C3 | C4 | C5 | H5 | 55.4° | 60.0° |
| C2 | C3 | C4 | C5 | 44.9° | 175.0° |
| C3 | C2 | C1 | O1A | 30.8° | 0.0° |
| C3 | C2 | C1 | O2 | 178.3° | 179.9° |
| C3 | C2 | C1 | O1B | 148.6° | 180.0° |
| C2 | C3 | C4 | H4 | 73.5° | 65.0° |
| C2 | C3 | O3 | HO3 | 33.6° | 60.0° |
| C4 | C5 | C6 | O5 | 120.8° | 119.9° |
| C4 | C5 | C6 | H5 | 121.1° | 120.1° |
| C4 | C5 | O5 | H5 | 118.3° | 120.0° |
| C4 | C5 | C6 | O6 | 173.7° | 175.0° |
| C5 | C4 | O4 | HO4 | 59.2° | 60.0° |
| C5 | C4 | C3 | H3 | 74.5° | 65.1° |
| C4 | C5 | O5 | HO5 | 66.9° | 60.0° |
| C4 | C5 | C6 | H61 | 66.4° | 55.1° |
| C4 | C5 | C6 | H62 | 53.9° | 64.9° |
| O1A | C1 | C2 | O1B | 179.5° | 180.0° |
| O1A | C1 | C2 | O2 | 150.9° | 180.0° |
| O1A | C1 | O1B | HO1B | 0.0° | 0.0° |
| C2 | C1 | O1B | HO1B | 179.4° | 180.0° |
| C1 | C2 | C3 | H3 | 170.5° | 44.9° |
| O2 | C2 | C1 | O1B | 29.6° | 0.0° |
| O2 | C2 | C3 | H3 | 11.2° | 135.0° |
| C6 | C5 | O5 | H5 | 117.3° | 120.0° |
| C5 | C6 | O6 | H61 | 119.8° | 120.0° |
| C5 | C6 | O6 | H62 | 119.8° | 120.1° |
| C6 | C5 | C4 | H4 | 64.9° | 60.0° |
| C6 | C5 | O5 | HO5 | 168.7° | 60.0° |
| C5 | C6 | H61 | H62 | 120.4° | 120.0° |
| C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
| O5 | C5 | C6 | O6 | 52.8° | 65.1° |
| O5 | C5 | C4 | H4 | 54.7° | 60.0° |
| O5 | C5 | C6 | H61 | 172.7° | 175.0° |
| O5 | C5 | C6 | H62 | 67.0° | 55.0° |
| O6 | C6 | C5 | H5 | 65.2° | 54.9° |
| O6 | C6 | H61 | H62 | 120.4° | 120.0° |
| H4 | C4 | O4 | HO4 | 61.0° | 180.0° |
| H4 | C4 | C3 | H3 | 167.0° | 55.0° |
| H4 | C4 | C5 | H5 | 173.8° | 180.0° |
| H3 | C3 | O3 | HO3 | 152.7° | 180.0° |
| H5 | C5 | O5 | HO5 | 51.4° | 180.0° |
| H5 | C5 | C6 | H61 | 54.7° | 65.0° |
| H5 | C5 | C6 | H62 | 175.0° | 175.0° |
| H61 | C6 | O6 | HO6 | 60.1° | 60.0° |
| H62 | C6 | O6 | HO6 | 60.2° | 59.9° |
