8XC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP1 | P | doub | 1.48Å | 1.48Å | |
P | O5' | sing | 1.61Å | 1.62Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
O2' | C2' | sing | 1.43Å | 1.43Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.42Å | |
C3' | C2' | sing | 1.54Å | 1.52Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.55Å | 1.53Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C1' | N1 | sing | 1.46Å | 1.48Å | |
N1 | C6 | sing | 1.36Å | 1.37Å | |
N1 | C2 | sing | 1.35Å | 1.38Å | |
O2 | C2 | doub | 1.22Å | 1.23Å | |
C6 | C5 | doub | 1.35Å | 1.35Å | |
C2 | N3 | sing | 1.33Å | 1.36Å | |
C5 | C4 | sing | 1.41Å | 1.43Å | |
N3 | C4 | doub | 1.33Å | 1.34Å | |
C4 | N4 | sing | 1.38Å | 1.33Å | |
P | O1 | sing | 1.61Å | 1.62Å | |
OP2 | H1 | sing | 0.97Å | 0.95Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
N4 | H41 | sing | 0.97Å | 1.00Å | |
N4 | H42 | sing | 0.97Å | 1.00Å | |
C5 | H5 | sing | 1.08Å | 1.08Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
O1 | H2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | O5' | 108.6° | 109.5° |
OP1 | P | OP2 | 119.3° | 109.4° |
OP1 | P | O1 | 108.7° | 109.5° |
O5' | P | OP2 | 108.5° | 109.5° |
P | O5' | C5' | 119.8° | 123.0° |
O5' | P | O1 | 101.7° | 109.5° |
OP2 | P | O1 | 108.7° | 109.5° |
P | OP2 | H1 | 109.5° | 114.0° |
O5' | C5' | C4' | 112.0° | 109.5° |
O5' | C5' | H5'' | 108.9° | 109.4° |
O5' | C5' | H5' | 108.8° | 109.5° |
O2' | C2' | C3' | 111.4° | 110.6° |
O2' | C2' | C1' | 111.6° | 110.5° |
O2' | C2' | H2' | 111.4° | 110.4° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C3' | C4' | C5' | 110.8° | 110.3° |
C3' | C4' | O4' | 108.8° | 104.8° |
C4' | C3' | C2' | 102.1° | 104.1° |
C4' | C3' | O3' | 111.6° | 110.5° |
C3' | C4' | H4' | 108.5° | 110.4° |
C4' | C3' | H3' | 110.1° | 110.5° |
C5' | C4' | O4' | 110.2° | 110.4° |
C4' | C5' | H5'' | 108.8° | 109.4° |
C4' | C5' | H5' | 108.8° | 109.5° |
C5' | C4' | H4' | 108.5° | 110.3° |
C4' | O4' | C1' | 108.4° | 105.2° |
O4' | C4' | H4' | 109.9° | 110.5° |
C2' | C3' | O3' | 111.0° | 110.5° |
C3' | C2' | C1' | 101.9° | 104.1° |
C3' | C2' | H2' | 110.1° | 110.5° |
C2' | C3' | H3' | 110.2° | 110.6° |
O3' | C3' | H3' | 111.5° | 110.5° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C2' | C1' | O4' | 107.7° | 104.8° |
C2' | C1' | N1 | 111.3° | 110.4° |
C2' | C1' | H1' | 108.5° | 110.5° |
C1' | C2' | H2' | 110.0° | 110.5° |
O4' | C1' | N1 | 110.2° | 110.3° |
O4' | C1' | H1' | 109.9° | 110.4° |
C1' | N1 | C6 | 120.7° | 119.8° |
C1' | N1 | C2 | 117.8° | 119.8° |
N1 | C1' | H1' | 109.1° | 110.3° |
C6 | N1 | C2 | 121.4° | 120.4° |
N1 | C6 | C5 | 120.6° | 119.2° |
N1 | C6 | H6 | 119.7° | 120.3° |
N1 | C2 | O2 | 120.5° | 119.4° |
N1 | C2 | N3 | 118.3° | 121.1° |
O2 | C2 | N3 | 121.2° | 119.5° |
C6 | C5 | C4 | 117.6° | 119.0° |
C5 | C6 | H6 | 119.7° | 120.4° |
C6 | C5 | H5 | 121.2° | 120.5° |
C2 | N3 | C4 | 121.1° | 120.7° |
C5 | C4 | N3 | 121.0° | 119.6° |
C5 | C4 | N4 | 119.7° | 120.2° |
C4 | C5 | H5 | 121.2° | 120.5° |
N3 | C4 | N4 | 119.3° | 120.2° |
C4 | N4 | H41 | 120.0° | 120.1° |
C4 | N4 | H42 | 120.0° | 120.0° |
P | O1 | H2 | 109.5° | 114.0° |
H5'' | C5' | H5' | 109.5° | 109.5° |
H41 | N4 | H42 | 120.0° | 119.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | O5' | OP2 | 131.0° | 120.0° |
OP1 | P | O5' | O1 | 114.5° | 120.0° |
OP1 | P | OP2 | O1 | 125.3° | 120.0° |
OP1 | P | O5' | C5' | 137.6° | 55.1° |
OP1 | P | OP2 | H1 | 0.0° | 60.0° |
OP1 | P | O1 | H2 | 0.0° | 179.9° |
O5' | P | OP2 | O1 | 109.9° | 120.0° |
P | O5' | C5' | C4' | 121.2° | 180.0° |
O5' | P | OP2 | H1 | 124.9° | 180.0° |
P | O5' | C5' | H5'' | 0.9° | 60.1° |
P | O5' | C5' | H5' | 118.4° | 60.0° |
O5' | P | O1 | H2 | 114.4° | 60.1° |
OP2 | P | O5' | C5' | 91.4° | 175.0° |
OP2 | P | O1 | H2 | 131.2° | 60.0° |
O5' | C5' | C4' | C3' | 87.5° | 175.0° |
O5' | C5' | C4' | H5'' | 120.4° | 119.9° |
O5' | C5' | C4' | H5' | 120.4° | 120.1° |
O5' | C5' | C4' | O4' | 151.9° | 69.6° |
C5' | O5' | P | O1 | 23.1° | 64.9° |
O5' | C5' | H5'' | H5' | 118.9° | 120.1° |
O5' | C5' | C4' | H4' | 31.5° | 52.8° |
O2' | C2' | C3' | C4' | 87.5° | 118.7° |
O2' | C2' | C3' | C1' | 119.1° | 118.7° |
O2' | C2' | C3' | H2' | 124.1° | 122.7° |
O2' | C2' | C3' | O3' | 153.5° | 122.7° |
O2' | C2' | C1' | H2' | 124.2° | 122.5° |
O2' | C2' | C1' | O4' | 87.9° | 142.8° |
O2' | C2' | C1' | N1 | 151.2° | 98.4° |
O2' | C2' | C1' | H1' | 31.0° | 23.9° |
O2' | C2' | C3' | H3' | 29.5° | 0.0° |
C3' | C4' | C5' | O4' | 120.5° | 115.4° |
C3' | C4' | C5' | H4' | 119.1° | 122.2° |
C3' | C4' | O4' | H4' | 118.7° | 118.9° |
C4' | C3' | C2' | O3' | 119.1° | 118.6° |
C4' | C3' | C2' | H3' | 117.0° | 118.7° |
C4' | C3' | O3' | H3' | 123.6° | 122.7° |
C4' | C3' | C2' | C1' | 31.6° | 0.0° |
C3' | C4' | O4' | C1' | 4.2° | 40.5° |
C3' | C4' | C5' | H5'' | 152.1° | 65.1° |
C3' | C4' | C5' | H5' | 32.8° | 55.0° |
C4' | C3' | C2' | H2' | 148.4° | 118.6° |
C4' | C3' | O3' | HO3' | 180.0° | 179.9° |
C5' | C4' | O4' | H4' | 119.6° | 122.3° |
C5' | C4' | C3' | C2' | 144.7° | 142.8° |
C5' | C4' | C3' | O3' | 26.1° | 24.2° |
C5' | C4' | O4' | C1' | 125.9° | 159.3° |
C4' | C5' | H5'' | H5' | 118.8° | 120.0° |
C5' | C4' | C3' | H3' | 98.3° | 98.5° |
O4' | C4' | C3' | C2' | 23.3° | 24.0° |
O4' | C4' | C3' | O3' | 95.3° | 94.7° |
C4' | O4' | C1' | C2' | 17.1° | 40.5° |
C4' | O4' | C1' | N1 | 104.5° | 159.3° |
O4' | C4' | C5' | H5'' | 31.6° | 50.3° |
O4' | C4' | C5' | H5' | 87.7° | 170.3° |
C4' | O4' | C1' | H1' | 135.1° | 78.4° |
O4' | C4' | C3' | H3' | 140.3° | 142.7° |
C2' | C3' | O3' | H3' | 123.2° | 122.7° |
C3' | C2' | C1' | H2' | 116.8° | 118.7° |
C3' | C2' | C1' | O4' | 31.1° | 24.0° |
C3' | C2' | C1' | N1 | 89.8° | 142.8° |
C2' | C3' | C4' | H4' | 96.2° | 95.0° |
C3' | C2' | C1' | H1' | 150.1° | 94.9° |
C3' | C2' | O2' | HO2' | 180.0° | 65.3° |
C2' | C3' | O3' | HO3' | 66.8° | 65.3° |
O3' | C3' | C2' | C1' | 87.4° | 118.6° |
O3' | C3' | C4' | H4' | 145.2° | 146.4° |
O3' | C3' | C2' | H2' | 29.3° | 0.0° |
C2' | C1' | O4' | N1 | 121.6° | 118.8° |
C2' | C1' | O4' | H1' | 118.0° | 119.0° |
C2' | C1' | N1 | H1' | 119.8° | 122.4° |
C2' | C1' | N1 | C6 | 118.9° | 118.2° |
C2' | C1' | N1 | C2 | 61.9° | 62.1° |
C1' | C2' | O2' | HO2' | 66.8° | 180.0° |
C1' | C2' | C3' | H3' | 148.6° | 118.6° |
O4' | C1' | N1 | H1' | 120.8° | 122.2° |
O4' | C1' | N1 | C6 | 0.5° | 126.5° |
O4' | C1' | N1 | C2 | 178.7° | 53.3° |
C1' | O4' | C4' | H4' | 114.5° | 78.4° |
O4' | C1' | C2' | H2' | 147.9° | 94.7° |
C1' | N1 | C6 | C2 | 179.2° | 179.7° |
C1' | N1 | C2 | O2 | 1.6° | 0.1° |
C1' | N1 | C6 | C5 | 178.9° | 180.0° |
C1' | N1 | C2 | N3 | 178.9° | 180.0° |
C1' | N1 | C6 | H6 | 1.1° | 0.0° |
N1 | C1' | C2' | H2' | 27.0° | 24.1° |
C6 | N1 | C2 | O2 | 179.2° | 179.8° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
C6 | N1 | C2 | N3 | 0.3° | 0.3° |
N1 | C6 | C5 | C4 | 0.1° | 0.0° |
C6 | N1 | C1' | H1' | 121.3° | 4.2° |
N1 | C6 | C5 | H5 | 179.9° | 180.0° |
N1 | C2 | O2 | N3 | 179.5° | 179.9° |
C2 | N1 | C6 | C5 | 0.3° | 0.3° |
N1 | C2 | N3 | C4 | 0.1° | 0.0° |
C2 | N1 | C1' | H1' | 57.9° | 175.5° |
C2 | N1 | C6 | H6 | 179.7° | 179.7° |
O2 | C2 | N3 | C4 | 179.4° | 179.9° |
C6 | C5 | C4 | H5 | 180.0° | 180.0° |
C6 | C5 | C4 | N3 | 0.1° | 0.3° |
C6 | C5 | C4 | N4 | 179.5° | 180.0° |
C2 | N3 | C4 | C5 | 0.1° | 0.3° |
C2 | N3 | C4 | N4 | 179.5° | 180.0° |
C5 | C4 | N3 | N4 | 179.6° | 179.7° |
C4 | C5 | C6 | H6 | 179.9° | 180.0° |
C5 | C4 | N4 | H41 | 179.6° | 179.8° |
C5 | C4 | N4 | H42 | 0.4° | 0.3° |
N3 | C4 | N4 | H41 | 0.0° | 0.1° |
N3 | C4 | N4 | H42 | 180.0° | 180.0° |
N3 | C4 | C5 | H5 | 179.9° | 179.7° |
C4 | N4 | H41 | H42 | 180.0° | 179.9° |
N4 | C4 | C5 | H5 | 0.5° | 0.0° |
O1 | P | OP2 | H1 | 125.3° | 60.0° |
H5'' | C5' | C4' | H4' | 88.9° | 172.7° |
H5' | C5' | C4' | H4' | 151.9° | 67.3° |
H4' | C4' | C3' | H3' | 20.8° | 23.7° |
H1' | C1' | C2' | H2' | 93.2° | 146.5° |
H6 | C6 | C5 | H5 | 0.1° | 0.1° |
H2' | C2' | O2' | HO2' | 56.6° | 57.4° |
H2' | C2' | C3' | H3' | 94.7° | 122.7° |
H3' | C3' | O3' | HO3' | 56.4° | 57.4° |