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SummaryGeometryRelated PDB entries

8RU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C08C04sing1.53Å1.52Å
C04C03sing1.51Å1.54Å
C05C03doub1.38Å1.38ÅAromatic
C05C07sing1.39Å1.39ÅAromatic
O01C07sing1.36Å1.39Å
C03C06sing1.38Å1.38ÅAromatic
C07C10doub1.39Å1.37ÅAromatic
C06C09doub1.38Å1.39ÅAromatic
C10C09sing1.39Å1.36ÅAromatic
C10O02sing1.36Å1.38Å
O01H1sing0.97Å0.95Å
O02H2sing0.97Å0.95Å
C04H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
C05H5sing1.08Å1.08Å
C06H6sing1.08Å1.08Å
C08H7sing1.09Å1.10Å
C08H8sing1.09Å1.10Å
C08H9sing1.09Å1.10Å
C09H10sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C08C04C03117.4°109.5°
C08C04H3107.5°109.4°
C08C04H4107.4°109.5°
C04C08H7109.5°109.4°
C04C08H8109.5°109.5°
C04C08H9109.5°109.5°
C04C03C05124.8°120.0°
C04C03C06118.3°119.9°
C03C04H3107.4°109.5°
C03C04H4107.5°109.5°
C03C05C07120.7°120.0°
C05C03C06116.8°120.1°
C03C05H5119.7°120.0°
C05C07O01121.4°120.1°
C05C07C10121.2°119.8°
C07C05H5119.7°120.0°
O01C07C10117.5°120.1°
C07O01H1109.5°114.0°
C03C06C09122.8°120.1°
C03C06H6118.6°119.9°
C07C10C09119.7°119.9°
C07C10O02118.5°120.1°
C06C09C10118.9°120.0°
C09C06H6118.6°119.9°
C06C09H10120.6°120.0°
C09C10O02121.7°120.0°
C10C09H10120.6°120.0°
C10O02H2109.5°114.0°
H3C04H4109.5°109.5°
H7C08H8109.5°109.4°
H7C08H9109.5°109.5°
H8C08H9109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C08C04C03H3121.1°120.0°
C08C04C03H4121.1°120.0°
C08C04C03C050.5°89.7°
C08C04C03C06179.4°90.0°
C08C04H3H4116.4°119.9°
C04C08H7H8120.0°120.0°
C04C08H7H9120.0°120.0°
C04C08H8H9120.0°120.1°
C04C03C05C06179.9°179.7°
C04C03C05C07179.5°179.7°
C04C03C06C09179.9°180.0°
C03C04H3H4116.4°120.1°
C04C03C05H50.5°0.3°
C04C03C06H60.1°0.0°
C03C04C08H7180.0°60.0°
C03C04C08H860.0°59.9°
C03C04C08H960.0°180.0°
C03C05C07H5180.0°180.0°
C03C05C07O01177.3°179.9°
C03C05C07C101.2°0.1°
C05C03C06C090.1°0.3°
C05C03C04H3121.6°30.3°
C05C03C04H4120.6°150.3°
C05C03C06H6179.9°179.7°
C05C07O01C10178.5°179.9°
C07C05C03C060.4°0.0°
C05C07C10C091.5°0.2°
C05C07C10O02178.7°180.0°
C05C07O01H1180.0°90.1°
O01C07C10C09177.0°179.7°
O01C07C10O020.2°0.1°
O01C07C05H52.7°0.1°
C03C06C09H6180.0°180.0°
C03C06C09C100.2°0.5°
C06C03C04H358.3°150.0°
C06C03C04H459.5°30.0°
C06C03C05H5179.6°180.0°
C03C06C09H10179.8°180.0°
C07C10C09C061.0°0.5°
C07C10C09O02177.1°179.8°
C10C07O01H11.4°90.0°
C07C10O02H2180.0°90.0°
C10C07C05H5178.8°180.0°
C07C10C09H10179.0°180.0°
C06C09C10H10180.0°179.5°
C06C09C10O02178.2°179.8°
C09C10O02H22.9°90.3°
C10C09C06H6179.8°179.5°
O02C10C09H101.8°0.2°
H3C04C08H758.9°180.0°
H3C04C08H861.1°60.0°
H3C04C08H9178.9°60.0°
H4C04C08H758.9°60.1°
H4C04C08H8178.9°180.0°
H4C04C08H961.1°59.9°
H6C06C09H100.2°0.0°
H7C08H8H9120.0°120.0°

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PDB entries from 2024-10-09

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