8RO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | sing | 1.61Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.56Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C1' | N1 | sing | 1.46Å | 1.54Å | |
| N1 | C2 | sing | 1.35Å | 1.37Å | |
| N1 | C6 | sing | 1.46Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.34Å | 1.40Å | |
| N3 | C4 | sing | 1.45Å | 1.41Å | |
| N3 | S4 | sing | 1.63Å | 2.40Å | |
| C4 | S4 | sing | 1.74Å | 1.30Å | |
| C4 | C5 | doub | 1.33Å | 1.48Å | |
| C5 | C7 | sing | 1.51Å | 1.50Å | |
| C5 | C6 | sing | 1.52Å | 1.36Å | |
| OP1 | H1 | sing | 0.97Å | 0.95Å | |
| OP2 | H2 | sing | 0.97Å | 0.95Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| C7 | H11 | sing | 1.09Å | 1.10Å | |
| C7 | H12 | sing | 1.09Å | 1.10Å | |
| C7 | H13 | sing | 1.09Å | 1.10Å | |
| C6 | H14 | sing | 1.09Å | 1.10Å | |
| C6 | H15 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 122.3° | 102.0° |
| OP1 | P | O5' | 106.7° | 102.0° |
| P | OP1 | H1 | 109.5° | 114.0° |
| OP2 | P | O5' | 107.1° | 102.0° |
| P | OP2 | H2 | 109.5° | 114.0° |
| P | O5' | C5' | 119.5° | 123.0° |
| O5' | C5' | C4' | 107.6° | 109.4° |
| O5' | C5' | H3 | 109.9° | 109.5° |
| O5' | C5' | H4 | 109.9° | 109.5° |
| C5' | C4' | O4' | 109.2° | 110.7° |
| C5' | C4' | C3' | 112.8° | 110.6° |
| C4' | C5' | H3 | 109.9° | 109.4° |
| C4' | C5' | H4 | 109.9° | 109.5° |
| C5' | C4' | H5 | 109.4° | 110.5° |
| O4' | C4' | C3' | 106.0° | 103.5° |
| C4' | O4' | C1' | 111.5° | 107.0° |
| O4' | C4' | H5 | 110.3° | 110.6° |
| C4' | C3' | O3' | 107.0° | 110.9° |
| C4' | C3' | C2' | 105.4° | 102.1° |
| C3' | C4' | H5 | 109.1° | 110.7° |
| C4' | C3' | H6 | 109.2° | 110.9° |
| O4' | C1' | C2' | 105.1° | 107.3° |
| O4' | C1' | N1 | 106.4° | 109.9° |
| O4' | C1' | H10 | 110.2° | 109.9° |
| O3' | C3' | C2' | 115.7° | 110.9° |
| O3' | C3' | H6 | 110.5° | 110.8° |
| C3' | O3' | H7 | 109.5° | 114.0° |
| C3' | C2' | C1' | 103.9° | 104.2° |
| C2' | C3' | H6 | 108.8° | 111.0° |
| C3' | C2' | H8 | 110.8° | 110.5° |
| C3' | C2' | H9 | 110.9° | 110.5° |
| C2' | C1' | N1 | 118.3° | 109.9° |
| C1' | C2' | H8 | 110.9° | 110.5° |
| C1' | C2' | H9 | 110.9° | 110.5° |
| C2' | C1' | H10 | 108.4° | 109.9° |
| C1' | N1 | C2 | 119.0° | 116.6° |
| C1' | N1 | C6 | 121.4° | 116.6° |
| N1 | C1' | H10 | 108.4° | 110.0° |
| C2 | N1 | C6 | 119.6° | 126.7° |
| N1 | C2 | O2 | 119.9° | 121.1° |
| N1 | C2 | N3 | 116.5° | 117.8° |
| N1 | C6 | C5 | 124.3° | 111.0° |
| N1 | C6 | H14 | 105.6° | 109.2° |
| N1 | C6 | H15 | 105.6° | 109.2° |
| O2 | C2 | N3 | 123.6° | 121.1° |
| C2 | N3 | C4 | 127.9° | 107.5° |
| C2 | N3 | S4 | 154.5° | 131.4° |
| C4 | N3 | S4 | 26.7° | 68.7° |
| N3 | C4 | S4 | 124.2° | 60.5° |
| N3 | C4 | C5 | 111.7° | 130.8° |
| N3 | S4 | C4 | 29.1° | 50.9° |
| S4 | C4 | C5 | 124.0° | 164.6° |
| C4 | C5 | C7 | 121.2° | 123.9° |
| C4 | C5 | C6 | 120.0° | 112.2° |
| C7 | C5 | C6 | 118.8° | 123.9° |
| C5 | C7 | H11 | 109.5° | 109.5° |
| C5 | C7 | H12 | 109.4° | 109.5° |
| C5 | C7 | H13 | 109.5° | 109.4° |
| C5 | C6 | H14 | 105.6° | 109.3° |
| C5 | C6 | H15 | 105.6° | 109.0° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H8 | C2' | H9 | 109.4° | 110.5° |
| H11 | C7 | H12 | 109.5° | 109.5° |
| H11 | C7 | H13 | 109.4° | 109.5° |
| H12 | C7 | H13 | 109.5° | 109.5° |
| H14 | C6 | H15 | 109.5° | 109.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 123.3° | 105.2° |
| OP1 | P | O5' | C5' | 56.1° | 89.8° |
| OP1 | P | OP2 | H2 | 180.0° | 74.8° |
| OP2 | P | O5' | C5' | 171.4° | 165.0° |
| OP2 | P | OP1 | H1 | 180.0° | 180.0° |
| P | O5' | C5' | C4' | 173.9° | 180.0° |
| O5' | P | OP1 | H1 | 56.5° | 74.8° |
| O5' | P | OP2 | H2 | 56.7° | 180.0° |
| P | O5' | C5' | H3 | 66.4° | 60.1° |
| P | O5' | C5' | H4 | 54.2° | 60.0° |
| O5' | C5' | C4' | H3 | 119.7° | 119.9° |
| O5' | C5' | C4' | H4 | 119.7° | 120.0° |
| O5' | C5' | C4' | O4' | 64.7° | 66.4° |
| O5' | C5' | C4' | C3' | 52.9° | 179.5° |
| O5' | C5' | H3 | H4 | 120.8° | 120.0° |
| O5' | C5' | C4' | H5 | 174.6° | 56.5° |
| C5' | C4' | O4' | C3' | 121.8° | 118.5° |
| C5' | C4' | O4' | H5 | 120.2° | 122.8° |
| C5' | C4' | C3' | H5 | 121.8° | 122.9° |
| C5' | C4' | O4' | C1' | 142.8° | 158.6° |
| C5' | C4' | C3' | O3' | 113.6° | 86.2° |
| C5' | C4' | C3' | C2' | 122.8° | 155.6° |
| C4' | C5' | H3 | H4 | 120.9° | 120.0° |
| C5' | C4' | C3' | H6 | 6.0° | 37.3° |
| O4' | C4' | C3' | H5 | 118.7° | 118.6° |
| O4' | C4' | C3' | O3' | 126.9° | 155.2° |
| O4' | C4' | C3' | C2' | 3.3° | 37.0° |
| C4' | O4' | C1' | C2' | 29.8° | 26.5° |
| C4' | O4' | C1' | N1 | 156.0° | 145.9° |
| O4' | C4' | C5' | H3 | 175.6° | 53.5° |
| O4' | C4' | C5' | H4 | 55.0° | 173.5° |
| O4' | C4' | C3' | H6 | 113.4° | 81.3° |
| C4' | O4' | C1' | H10 | 86.8° | 93.0° |
| C3' | C4' | O4' | C1' | 21.0° | 40.1° |
| C4' | C3' | O3' | C2' | 117.1° | 112.7° |
| C4' | C3' | O3' | H6 | 118.7° | 123.6° |
| C4' | C3' | C2' | H6 | 117.0° | 118.2° |
| C4' | C3' | C2' | C1' | 13.3° | 20.9° |
| C3' | C4' | C5' | H3 | 66.8° | 60.6° |
| C3' | C4' | C5' | H4 | 172.6° | 59.4° |
| C4' | C3' | O3' | H7 | 180.0° | 180.0° |
| C4' | C3' | C2' | H8 | 105.9° | 139.6° |
| C4' | C3' | C2' | H9 | 132.4° | 97.8° |
| O4' | C1' | C2' | C3' | 25.6° | 2.0° |
| O4' | C1' | C2' | N1 | 118.5° | 119.4° |
| O4' | C1' | C2' | H10 | 117.8° | 119.5° |
| O4' | C1' | N1 | H10 | 118.4° | 121.1° |
| O4' | C1' | N1 | C2 | 120.1° | 53.5° |
| O4' | C1' | N1 | C6 | 59.7° | 126.7° |
| C1' | O4' | C4' | H5 | 96.9° | 78.6° |
| O4' | C1' | C2' | H8 | 93.5° | 116.6° |
| O4' | C1' | C2' | H9 | 144.7° | 120.7° |
| O3' | C3' | C2' | H6 | 125.1° | 123.6° |
| O3' | C3' | C2' | C1' | 104.7° | 139.0° |
| O3' | C3' | C4' | H5 | 8.2° | 36.6° |
| O3' | C3' | C2' | H8 | 136.2° | 102.3° |
| O3' | C3' | C2' | H9 | 14.4° | 20.4° |
| C3' | C2' | C1' | H8 | 119.1° | 118.7° |
| C3' | C2' | C1' | H9 | 119.1° | 118.7° |
| C3' | C2' | C1' | N1 | 144.1° | 121.4° |
| C2' | C3' | C4' | H5 | 115.4° | 81.6° |
| C2' | C3' | O3' | H7 | 62.9° | 67.4° |
| C3' | C2' | H8 | H9 | 122.6° | 122.6° |
| C3' | C2' | C1' | H10 | 92.2° | 117.4° |
| C2' | C1' | N1 | H10 | 123.7° | 121.1° |
| C2' | C1' | N1 | C2 | 122.1° | 64.3° |
| C2' | C1' | N1 | C6 | 58.2° | 115.5° |
| C1' | C2' | C3' | H6 | 130.2° | 97.3° |
| C1' | C2' | H8 | H9 | 122.6° | 122.6° |
| C1' | N1 | C2 | C6 | 179.7° | 179.8° |
| C1' | N1 | C2 | O2 | 1.4° | 20.1° |
| C1' | N1 | C2 | N3 | 179.5° | 160.0° |
| C1' | N1 | C6 | C5 | 179.6° | 170.4° |
| N1 | C1' | C2' | H8 | 25.0° | 2.7° |
| N1 | C1' | C2' | H9 | 96.8° | 119.9° |
| C1' | N1 | C6 | H14 | 57.6° | 49.9° |
| C1' | N1 | C6 | H15 | 58.4° | 69.4° |
| N1 | C2 | O2 | N3 | 179.0° | 179.9° |
| N1 | C2 | N3 | C4 | 0.4° | 39.2° |
| N1 | C2 | N3 | S4 | 0.0° | 115.9° |
| C2 | N1 | C6 | C5 | 0.1° | 9.3° |
| C2 | N1 | C1' | H10 | 1.7° | 174.6° |
| C2 | N1 | C6 | H14 | 122.1° | 129.9° |
| C2 | N1 | C6 | H15 | 121.9° | 110.8° |
| C6 | N1 | C2 | O2 | 178.8° | 159.7° |
| C6 | N1 | C2 | N3 | 0.2° | 20.2° |
| N1 | C6 | C5 | C4 | 0.2° | 12.9° |
| N1 | C6 | C5 | C7 | 179.8° | 166.8° |
| N1 | C6 | C5 | H14 | 122.0° | 120.5° |
| N1 | C6 | C5 | H15 | 122.0° | 120.3° |
| C6 | N1 | C1' | H10 | 178.1° | 5.6° |
| N1 | C6 | H14 | H15 | 113.3° | 119.3° |
| O2 | C2 | N3 | C4 | 178.6° | 140.7° |
| O2 | C2 | N3 | S4 | 179.0° | 64.1° |
| C2 | N3 | C4 | S4 | 179.6° | 128.4° |
| C2 | N3 | C4 | C5 | 0.5° | 38.7° |
| N3 | C4 | S4 | C5 | 179.0° | 140.5° |
| N3 | C4 | C5 | C7 | 179.6° | 169.1° |
| N3 | C4 | C5 | C6 | 0.4° | 11.1° |
| S4 | C4 | C5 | C7 | 0.5° | 57.9° |
| S4 | C4 | C5 | C6 | 179.4° | 121.9° |
| C4 | C5 | C7 | C6 | 180.0° | 179.7° |
| C4 | C5 | C7 | H11 | 180.0° | 0.0° |
| C4 | C5 | C7 | H12 | 60.0° | 120.0° |
| C4 | C5 | C7 | H13 | 60.0° | 120.1° |
| C4 | C5 | C6 | H14 | 122.2° | 133.4° |
| C4 | C5 | C6 | H15 | 121.8° | 107.4° |
| C5 | C7 | H11 | H12 | 120.0° | 120.0° |
| C5 | C7 | H11 | H13 | 120.0° | 120.0° |
| C5 | C7 | H12 | H13 | 120.0° | 120.0° |
| C7 | C5 | C6 | H14 | 57.8° | 46.3° |
| C7 | C5 | C6 | H15 | 58.2° | 72.9° |
| C6 | C5 | C7 | H11 | 0.0° | 179.7° |
| C6 | C5 | C7 | H12 | 120.0° | 59.7° |
| C6 | C5 | C7 | H13 | 120.0° | 60.2° |
| C5 | C6 | H14 | H15 | 113.3° | 119.1° |
| H3 | C5' | C4' | H5 | 54.8° | 176.4° |
| H4 | C5' | C4' | H5 | 65.7° | 63.6° |
| H5 | C4' | C3' | H6 | 127.8° | 160.2° |
| H6 | C3' | O3' | H7 | 61.2° | 56.4° |
| H6 | C3' | C2' | H8 | 11.1° | 21.4° |
| H6 | C3' | C2' | H9 | 110.6° | 144.0° |
| H8 | C2' | C1' | H10 | 148.7° | 123.9° |
| H9 | C2' | C1' | H10 | 26.9° | 1.3° |
| H11 | C7 | H12 | H13 | 120.0° | 120.1° |
