8RJ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1 | P | doub | 1.48Å | 1.48Å | |
| OP2 | P | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| O5' | C3G | sing | 1.43Å | 1.41Å | |
| C3G | C2G | sing | 1.53Å | 1.50Å | |
| O2G | C2G | sing | 1.43Å | 1.47Å | |
| C2G | C1G | sing | 1.53Å | 1.53Å | |
| C1G | N1 | sing | 1.46Å | 1.46Å | |
| O2 | C2 | doub | 1.22Å | 1.23Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| N1 | C6 | sing | 1.37Å | 1.40Å | |
| C2 | N3 | sing | 1.35Å | 1.39Å | |
| C6 | C5 | doub | 1.35Å | 1.40Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| C5 | C4 | sing | 1.42Å | 1.38Å | |
| C5 | C5M | sing | 1.51Å | 1.40Å | |
| C4 | O4 | doub | 1.22Å | 1.25Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| N3 | H2 | sing | 0.97Å | 1.00Å | |
| C5M | H3 | sing | 1.09Å | 1.10Å | |
| C5M | H4 | sing | 1.09Å | 1.10Å | |
| C5M | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1G | H7 | sing | 1.09Å | 1.10Å | |
| C1G | H8 | sing | 1.09Å | 1.10Å | |
| C2G | H9 | sing | 1.09Å | 1.10Å | |
| O2G | H10 | sing | 0.97Å | 0.95Å | |
| C3G | H11 | sing | 1.09Å | 1.10Å | |
| C3G | H12 | sing | 1.09Å | 1.10Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1 | P | OP2 | 120.3° | 109.5° |
| O1 | P | O5' | 112.2° | 109.4° |
| O1 | P | OP3 | 110.4° | 109.5° |
| OP2 | P | O5' | 108.2° | 109.5° |
| OP2 | P | OP3 | 109.1° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.1° |
| P | O5' | C3G | 118.0° | 123.0° |
| O5' | P | OP3 | 93.3° | 109.4° |
| O5' | C3G | C2G | 112.8° | 109.5° |
| O5' | C3G | H11 | 108.6° | 109.4° |
| O5' | C3G | H12 | 108.7° | 109.5° |
| C3G | C2G | O2G | 109.6° | 109.5° |
| C3G | C2G | C1G | 109.1° | 109.5° |
| C3G | C2G | H9 | 110.6° | 109.5° |
| C2G | C3G | H11 | 108.6° | 109.5° |
| C2G | C3G | H12 | 108.6° | 109.5° |
| O2G | C2G | C1G | 106.0° | 109.5° |
| O2G | C2G | H9 | 111.1° | 109.4° |
| C2G | O2G | H10 | 109.5° | 114.0° |
| C2G | C1G | N1 | 108.1° | 109.5° |
| C2G | C1G | H7 | 109.8° | 109.4° |
| C2G | C1G | H8 | 109.8° | 109.5° |
| C1G | C2G | H9 | 110.2° | 109.5° |
| C1G | N1 | C2 | 122.4° | 119.7° |
| C1G | N1 | C6 | 118.1° | 119.7° |
| N1 | C1G | H7 | 109.8° | 109.5° |
| N1 | C1G | H8 | 109.8° | 109.5° |
| O2 | C2 | N1 | 125.2° | 119.6° |
| O2 | C2 | N3 | 116.6° | 119.5° |
| C2 | N1 | C6 | 119.5° | 120.6° |
| N1 | C2 | N3 | 118.2° | 120.9° |
| N1 | C6 | C5 | 122.7° | 119.7° |
| N1 | C6 | H6 | 118.6° | 120.2° |
| C2 | N3 | C4 | 123.6° | 120.3° |
| C2 | N3 | H2 | 118.2° | 119.9° |
| C6 | C5 | C4 | 117.2° | 119.1° |
| C6 | C5 | C5M | 119.5° | 120.4° |
| C5 | C6 | H6 | 118.6° | 120.2° |
| N3 | C4 | C5 | 118.7° | 119.4° |
| N3 | C4 | O4 | 115.8° | 120.4° |
| C4 | N3 | H2 | 118.2° | 119.8° |
| C4 | C5 | C5M | 123.3° | 120.4° |
| C5 | C4 | O4 | 125.5° | 120.3° |
| C5 | C5M | H3 | 109.5° | 109.5° |
| C5 | C5M | H4 | 109.4° | 109.5° |
| C5 | C5M | H5 | 109.4° | 109.4° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| H3 | C5M | H4 | 109.5° | 109.5° |
| H3 | C5M | H5 | 109.5° | 109.5° |
| H4 | C5M | H5 | 109.5° | 109.5° |
| H7 | C1G | H8 | 109.5° | 109.4° |
| H11 | C3G | H12 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1 | P | OP2 | O5' | 130.7° | 120.0° |
| O1 | P | OP2 | OP3 | 129.0° | 120.0° |
| O1 | P | O5' | OP3 | 113.6° | 119.9° |
| O1 | P | O5' | C3G | 23.0° | 55.1° |
| O1 | P | OP2 | HOP2 | 0.0° | 179.9° |
| O1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP2 | P | O5' | OP3 | 111.4° | 120.0° |
| OP2 | P | O5' | C3G | 158.0° | 64.9° |
| OP2 | P | OP3 | HOP3 | 134.3° | 60.0° |
| P | O5' | C3G | C2G | 179.9° | 179.9° |
| O5' | P | OP2 | HOP2 | 130.7° | 60.0° |
| P | O5' | C3G | H11 | 59.6° | 60.1° |
| P | O5' | C3G | H12 | 59.4° | 59.9° |
| O5' | P | OP3 | HOP3 | 115.1° | 180.0° |
| O5' | C3G | C2G | H11 | 120.5° | 119.9° |
| O5' | C3G | C2G | H12 | 120.5° | 120.0° |
| O5' | C3G | C2G | O2G | 56.4° | 65.0° |
| O5' | C3G | C2G | C1G | 59.4° | 175.0° |
| C3G | O5' | P | OP3 | 90.7° | 175.0° |
| O5' | C3G | C2G | H9 | 179.2° | 55.0° |
| O5' | C3G | H11 | H12 | 118.5° | 120.0° |
| C3G | C2G | O2G | C1G | 117.7° | 120.0° |
| C3G | C2G | O2G | H9 | 122.6° | 120.0° |
| C3G | C2G | C1G | H9 | 121.7° | 120.0° |
| C3G | C2G | C1G | N1 | 174.6° | 175.0° |
| C3G | C2G | C1G | H7 | 54.9° | 65.0° |
| C3G | C2G | C1G | H8 | 65.6° | 55.0° |
| C3G | C2G | O2G | H10 | 180.0° | 60.0° |
| C2G | C3G | H11 | H12 | 118.5° | 120.0° |
| O2G | C2G | C1G | H9 | 120.4° | 119.9° |
| O2G | C2G | C1G | N1 | 67.4° | 65.0° |
| O2G | C2G | C1G | H7 | 172.8° | 55.1° |
| O2G | C2G | C1G | H8 | 52.4° | 175.0° |
| O2G | C2G | C3G | H11 | 64.1° | 175.1° |
| O2G | C2G | C3G | H12 | 176.9° | 55.0° |
| C2G | C1G | N1 | H7 | 119.8° | 120.0° |
| C2G | C1G | N1 | H8 | 119.8° | 120.0° |
| C2G | C1G | N1 | C2 | 106.7° | 90.0° |
| C2G | C1G | N1 | C6 | 73.7° | 89.7° |
| C2G | C1G | H7 | H8 | 120.6° | 119.9° |
| C1G | C2G | O2G | H10 | 62.3° | 60.1° |
| C1G | C2G | C3G | H11 | 179.8° | 55.0° |
| C1G | C2G | C3G | H12 | 61.2° | 65.0° |
| C1G | N1 | C2 | O2 | 0.0° | 0.1° |
| C1G | N1 | C2 | C6 | 179.6° | 179.7° |
| C1G | N1 | C2 | N3 | 179.5° | 180.0° |
| C1G | N1 | C6 | C5 | 179.8° | 180.0° |
| C1G | N1 | C6 | H6 | 0.2° | 0.0° |
| N1 | C1G | H7 | H8 | 120.6° | 120.0° |
| N1 | C1G | C2G | H9 | 53.0° | 55.0° |
| O2 | C2 | N1 | N3 | 179.6° | 179.9° |
| O2 | C2 | N1 | C6 | 179.7° | 179.7° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| O2 | C2 | N3 | H2 | 0.1° | 0.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.3° |
| N1 | C2 | N3 | C4 | 0.5° | 0.0° |
| N1 | C2 | N3 | H2 | 179.5° | 180.0° |
| C2 | N1 | C6 | H6 | 179.8° | 179.7° |
| C2 | N1 | C1G | H7 | 133.5° | 150.0° |
| C2 | N1 | C1G | H8 | 13.1° | 30.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.3° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.0° |
| N1 | C6 | C5 | C5M | 179.5° | 180.0° |
| C6 | N1 | C1G | H7 | 46.1° | 30.3° |
| C6 | N1 | C1G | H8 | 166.5° | 150.3° |
| C2 | N3 | C4 | H2 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.6° | 0.3° |
| C2 | N3 | C4 | O4 | 179.5° | 179.9° |
| C6 | C5 | C4 | N3 | 0.3° | 0.3° |
| C6 | C5 | C4 | C5M | 179.5° | 180.0° |
| C6 | C5 | C4 | O4 | 179.9° | 179.9° |
| C6 | C5 | C5M | H3 | 180.0° | 180.0° |
| C6 | C5 | C5M | H4 | 60.0° | 60.0° |
| C6 | C5 | C5M | H5 | 60.0° | 60.0° |
| N3 | C4 | C5 | O4 | 179.8° | 179.7° |
| N3 | C4 | C5 | C5M | 179.8° | 179.7° |
| C5 | C4 | N3 | H2 | 179.4° | 179.7° |
| C4 | C5 | C5M | H3 | 0.5° | 0.0° |
| C4 | C5 | C5M | H4 | 119.5° | 120.0° |
| C4 | C5 | C5M | H5 | 120.5° | 120.0° |
| C4 | C5 | C6 | H6 | 179.9° | 180.0° |
| C5M | C5 | C4 | O4 | 0.4° | 0.1° |
| C5 | C5M | H3 | H4 | 120.0° | 120.0° |
| C5 | C5M | H3 | H5 | 120.0° | 119.9° |
| C5 | C5M | H4 | H5 | 120.0° | 120.0° |
| C5M | C5 | C6 | H6 | 0.6° | 0.0° |
| O4 | C4 | N3 | H2 | 0.5° | 0.0° |
| OP3 | P | OP2 | HOP2 | 129.1° | 60.1° |
| H3 | C5M | H4 | H5 | 120.0° | 120.0° |
| H7 | C1G | C2G | H9 | 66.8° | 175.0° |
| H8 | C1G | C2G | H9 | 172.8° | 65.0° |
| H9 | C2G | O2G | H10 | 57.4° | 180.0° |
| H9 | C2G | C3G | H11 | 58.8° | 65.0° |
| H9 | C2G | C3G | H12 | 60.3° | 175.0° |
