8PK
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3 | C3 | sing | 1.43Å | 1.43Å | |
| C7 | O2 | sing | 1.43Å | 1.44Å | |
| C10 | C8 | sing | 1.53Å | 1.53Å | |
| C8 | O9 | sing | 1.43Å | 1.42Å | |
| C8 | O4 | sing | 1.43Å | 1.44Å | |
| O2 | C2 | sing | 1.43Å | 1.45Å | |
| C3 | C2 | sing | 1.53Å | 1.53Å | |
| C3 | C4 | sing | 1.53Å | 1.53Å | |
| C2 | C1 | sing | 1.53Å | 1.55Å | |
| O4 | C4 | sing | 1.43Å | 1.45Å | |
| C4 | C5 | sing | 1.53Å | 1.53Å | |
| C1 | O1 | sing | 1.43Å | 1.44Å | |
| C1 | O5 | sing | 1.43Å | 1.43Å | |
| C5 | O5 | sing | 1.43Å | 1.44Å | |
| C5 | C6 | sing | 1.53Å | 1.53Å | |
| O9 | H1A | sing | 0.97Å | 0.95Å | |
| C8 | H2A | sing | 1.09Å | 1.10Å | |
| C10 | H3A | sing | 1.09Å | 1.10Å | |
| C10 | H4A | sing | 1.09Å | 1.10Å | |
| C10 | H5A | sing | 1.09Å | 1.10Å | |
| C4 | H4 | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H61 | sing | 1.09Å | 1.10Å | |
| C6 | H62 | sing | 1.09Å | 1.10Å | |
| C6 | H63 | sing | 1.09Å | 1.10Å | |
| C3 | H3 | sing | 1.09Å | 1.10Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C2 | H2 | sing | 1.09Å | 1.10Å | |
| C7 | H14 | sing | 1.09Å | 1.10Å | |
| C7 | H15 | sing | 1.09Å | 1.10Å | |
| C7 | H16 | sing | 1.09Å | 1.10Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| O1 | HO1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3 | C3 | C2 | 110.8° | 109.6° |
| O3 | C3 | C4 | 111.0° | 109.5° |
| O3 | C3 | H3 | 109.3° | 109.6° |
| C3 | O3 | HO3 | 109.5° | 114.0° |
| C7 | O2 | C2 | 114.8° | 114.0° |
| O2 | C7 | H14 | 109.5° | 109.5° |
| O2 | C7 | H15 | 109.4° | 109.5° |
| O2 | C7 | H16 | 109.5° | 109.5° |
| C10 | C8 | O9 | 109.0° | 109.5° |
| C10 | C8 | O4 | 111.5° | 109.5° |
| C10 | C8 | H2A | 107.9° | 109.5° |
| C8 | C10 | H3A | 109.5° | 109.5° |
| C8 | C10 | H4A | 109.5° | 109.5° |
| C8 | C10 | H5A | 109.4° | 109.5° |
| O9 | C8 | O4 | 110.1° | 109.5° |
| C8 | O9 | H1A | 109.5° | 114.0° |
| O9 | C8 | H2A | 109.3° | 109.5° |
| C8 | O4 | C4 | 115.9° | 114.0° |
| O4 | C8 | H2A | 109.1° | 109.5° |
| O2 | C2 | C3 | 111.2° | 109.5° |
| O2 | C2 | C1 | 112.0° | 109.5° |
| O2 | C2 | H2 | 108.9° | 109.6° |
| C2 | C3 | C4 | 109.5° | 109.0° |
| C3 | C2 | C1 | 109.0° | 109.2° |
| C2 | C3 | H3 | 108.0° | 109.5° |
| C3 | C2 | H2 | 107.9° | 109.5° |
| C3 | C4 | O4 | 111.9° | 109.5° |
| C3 | C4 | C5 | 110.3° | 109.2° |
| C3 | C4 | H4 | 108.3° | 109.6° |
| C4 | C3 | H3 | 108.1° | 109.5° |
| C2 | C1 | O1 | 111.0° | 109.5° |
| C2 | C1 | O5 | 111.5° | 109.4° |
| C1 | C2 | H2 | 107.8° | 109.6° |
| C2 | C1 | H1 | 107.6° | 109.5° |
| O4 | C4 | C5 | 108.4° | 109.5° |
| O4 | C4 | H4 | 109.5° | 109.5° |
| C4 | C5 | O5 | 112.3° | 109.4° |
| C4 | C5 | C6 | 110.3° | 109.5° |
| C5 | C4 | H4 | 108.4° | 109.5° |
| C4 | C5 | H5 | 108.4° | 109.4° |
| O1 | C1 | O5 | 108.5° | 109.5° |
| O1 | C1 | H1 | 109.0° | 109.5° |
| C1 | O1 | HO1 | 109.5° | 114.0° |
| C1 | O5 | C5 | 116.2° | 114.1° |
| O5 | C1 | H1 | 109.2° | 109.5° |
| O5 | C5 | C6 | 107.8° | 109.5° |
| O5 | C5 | H5 | 109.5° | 109.5° |
| C6 | C5 | H5 | 108.4° | 109.5° |
| C5 | C6 | H61 | 109.5° | 109.5° |
| C5 | C6 | H62 | 109.5° | 109.4° |
| C5 | C6 | H63 | 109.5° | 109.5° |
| H3A | C10 | H4A | 109.5° | 109.4° |
| H3A | C10 | H5A | 109.4° | 109.5° |
| H4A | C10 | H5A | 109.5° | 109.5° |
| H61 | C6 | H62 | 109.4° | 109.5° |
| H61 | C6 | H63 | 109.4° | 109.5° |
| H62 | C6 | H63 | 109.5° | 109.5° |
| H14 | C7 | H15 | 109.5° | 109.5° |
| H14 | C7 | H16 | 109.5° | 109.4° |
| H15 | C7 | H16 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3 | C3 | C2 | O2 | 55.5° | 63.2° |
| O3 | C3 | C2 | C4 | 122.8° | 119.9° |
| O3 | C3 | C2 | H3 | 119.7° | 120.3° |
| O3 | C3 | C4 | H3 | 119.9° | 120.2° |
| O3 | C3 | C2 | C1 | 179.4° | 176.9° |
| O3 | C3 | C4 | O4 | 58.3° | 57.0° |
| O3 | C3 | C4 | C5 | 179.1° | 176.9° |
| O3 | C3 | C4 | H4 | 62.5° | 63.2° |
| O3 | C3 | C2 | H2 | 63.9° | 56.9° |
| C7 | O2 | C2 | C3 | 98.8° | 150.0° |
| C7 | O2 | C2 | C1 | 139.1° | 90.3° |
| C7 | O2 | C2 | H2 | 20.0° | 29.9° |
| O2 | C7 | H14 | H15 | 120.0° | 120.0° |
| O2 | C7 | H14 | H16 | 120.0° | 120.0° |
| O2 | C7 | H15 | H16 | 120.0° | 120.0° |
| C10 | C8 | O9 | O4 | 122.6° | 120.0° |
| C10 | C8 | O9 | H2A | 117.7° | 120.0° |
| C10 | C8 | O4 | H2A | 119.0° | 120.0° |
| C10 | C8 | O4 | C4 | 179.0° | 169.2° |
| C10 | C8 | O9 | H1A | 180.0° | 65.0° |
| C8 | C10 | H3A | H4A | 120.0° | 120.0° |
| C8 | C10 | H3A | H5A | 120.0° | 120.0° |
| C8 | C10 | H4A | H5A | 120.0° | 120.0° |
| O9 | C8 | O4 | H2A | 119.9° | 120.0° |
| O9 | C8 | O4 | C4 | 59.9° | 70.8° |
| O9 | C8 | C10 | H3A | 180.0° | 60.0° |
| O9 | C8 | C10 | H4A | 60.0° | 180.0° |
| O9 | C8 | C10 | H5A | 60.0° | 60.0° |
| C8 | O4 | C4 | C3 | 89.9° | 96.7° |
| C8 | O4 | C4 | C5 | 148.2° | 143.6° |
| O4 | C8 | O9 | H1A | 57.4° | 55.0° |
| O4 | C8 | C10 | H3A | 58.3° | 60.0° |
| O4 | C8 | C10 | H4A | 178.3° | 60.0° |
| O4 | C8 | C10 | H5A | 61.7° | 180.0° |
| C8 | O4 | C4 | H4 | 30.2° | 23.5° |
| O2 | C2 | C3 | C1 | 123.9° | 119.9° |
| O2 | C2 | C3 | H2 | 119.4° | 120.1° |
| O2 | C2 | C3 | C4 | 178.3° | 176.9° |
| O2 | C2 | C1 | H2 | 119.8° | 120.2° |
| O2 | C2 | C1 | O1 | 58.0° | 57.5° |
| O2 | C2 | C1 | O5 | 179.1° | 177.5° |
| O2 | C2 | C3 | H3 | 64.2° | 57.0° |
| C2 | O2 | C7 | H14 | 180.0° | 60.0° |
| C2 | O2 | C7 | H15 | 60.0° | 60.0° |
| C2 | O2 | C7 | H16 | 60.0° | 180.0° |
| O2 | C2 | C1 | H1 | 61.2° | 62.5° |
| C2 | C3 | C4 | H3 | 117.4° | 119.8° |
| C3 | C2 | C1 | H2 | 116.8° | 119.9° |
| C2 | C3 | C4 | O4 | 64.4° | 62.9° |
| C2 | C3 | C4 | C5 | 56.4° | 56.9° |
| C3 | C2 | C1 | O1 | 65.4° | 62.4° |
| C3 | C2 | C1 | O5 | 55.7° | 57.6° |
| C2 | C3 | C4 | H4 | 174.8° | 176.9° |
| C2 | C3 | O3 | HO3 | 180.0° | 60.0° |
| C3 | C2 | C1 | H1 | 175.4° | 177.6° |
| C4 | C3 | C2 | C1 | 57.8° | 57.0° |
| C3 | C4 | O4 | C5 | 121.9° | 119.7° |
| C3 | C4 | O4 | H4 | 120.1° | 120.2° |
| C3 | C4 | C5 | H4 | 118.4° | 120.0° |
| C3 | C4 | C5 | O5 | 52.1° | 57.6° |
| C3 | C4 | C5 | C6 | 172.4° | 177.6° |
| C3 | C4 | C5 | H5 | 69.0° | 62.4° |
| C4 | C3 | O3 | HO3 | 58.1° | 179.6° |
| C4 | C3 | C2 | H2 | 59.0° | 63.0° |
| C2 | C1 | O1 | O5 | 122.8° | 119.9° |
| C2 | C1 | O1 | H1 | 118.4° | 120.0° |
| C2 | C1 | O5 | H1 | 118.8° | 120.0° |
| C2 | C1 | O5 | C5 | 53.8° | 61.2° |
| C1 | C2 | C3 | H3 | 59.6° | 62.9° |
| C2 | C1 | O1 | HO1 | 180.0° | 180.0° |
| O4 | C4 | C5 | H4 | 118.7° | 120.1° |
| O4 | C4 | C5 | O5 | 70.8° | 62.3° |
| O4 | C4 | C5 | C6 | 49.6° | 57.7° |
| C4 | O4 | C8 | H2A | 59.9° | 49.2° |
| O4 | C4 | C5 | H5 | 168.1° | 177.7° |
| O4 | C4 | C3 | H3 | 178.2° | 177.2° |
| C4 | C5 | O5 | C1 | 52.0° | 61.2° |
| C4 | C5 | O5 | C6 | 121.8° | 120.0° |
| C4 | C5 | O5 | H5 | 120.5° | 120.0° |
| C4 | C5 | C6 | H5 | 118.5° | 120.0° |
| C4 | C5 | C6 | H61 | 180.0° | 54.8° |
| C4 | C5 | C6 | H62 | 60.0° | 174.8° |
| C4 | C5 | C6 | H63 | 60.0° | 65.2° |
| C5 | C4 | C3 | H3 | 61.0° | 62.9° |
| O1 | C1 | O5 | H1 | 118.7° | 120.0° |
| O1 | C1 | O5 | C5 | 68.8° | 58.8° |
| O1 | C1 | C2 | H2 | 177.8° | 177.7° |
| C1 | O5 | C5 | C6 | 173.8° | 178.9° |
| C1 | O5 | C5 | H5 | 68.5° | 58.8° |
| O5 | C1 | C2 | H2 | 61.1° | 62.3° |
| O5 | C1 | O1 | HO1 | 57.1° | 60.1° |
| O5 | C5 | C6 | H5 | 118.5° | 120.1° |
| O5 | C5 | C4 | H4 | 170.5° | 177.6° |
| O5 | C5 | C6 | H61 | 57.0° | 174.7° |
| O5 | C5 | C6 | H62 | 63.0° | 65.2° |
| O5 | C5 | C6 | H63 | 177.0° | 54.7° |
| C5 | O5 | C1 | H1 | 172.5° | 178.8° |
| C6 | C5 | C4 | H4 | 69.1° | 62.4° |
| C5 | C6 | H61 | H62 | 120.0° | 120.0° |
| C5 | C6 | H61 | H63 | 120.0° | 120.0° |
| C5 | C6 | H62 | H63 | 120.0° | 120.0° |
| H1A | O9 | C8 | H2A | 62.3° | 175.0° |
| H2A | C8 | C10 | H3A | 61.5° | 180.0° |
| H2A | C8 | C10 | H4A | 58.6° | 60.0° |
| H2A | C8 | C10 | H5A | 178.6° | 60.0° |
| H3A | C10 | H4A | H5A | 120.0° | 120.0° |
| H4 | C4 | C5 | H5 | 49.4° | 57.6° |
| H4 | C4 | C3 | H3 | 57.4° | 57.1° |
| H5 | C5 | C6 | H61 | 61.5° | 65.2° |
| H5 | C5 | C6 | H62 | 178.5° | 54.8° |
| H5 | C5 | C6 | H63 | 58.5° | 174.8° |
| H61 | C6 | H62 | H63 | 119.9° | 120.0° |
| H3 | C3 | O3 | HO3 | 61.0° | 60.3° |
| H3 | C3 | C2 | H2 | 176.4° | 177.2° |
| H2 | C2 | C1 | H1 | 58.6° | 57.7° |
| H14 | C7 | H15 | H16 | 120.0° | 120.0° |
| H1 | C1 | O1 | HO1 | 61.7° | 59.9° |






