Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

8P9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAJCAIsing1.51Å1.52Å
CAINAHdoub1.30Å1.33ÅAromatic
CAICAEsing1.47Å1.33ÅAromatic
NAHOAGsing1.41Å1.49ÅAromatic
CAECAFdoub1.40Å1.36ÅAromatic
CAECADsing1.41Å1.37ÅAromatic
CAFCAAsing1.38Å1.41ÅAromatic
OAGCADsing1.35Å1.38ÅAromatic
CADCACdoub1.39Å1.33ÅAromatic
OAOSANdoub1.42Å1.48Å
CAANAKsing1.40Å1.37Å
CAACABdoub1.40Å1.40ÅAromatic
NAKSANsing1.66Å1.68Å
CACCABsing1.38Å1.40ÅAromatic
CABOALsing1.36Å1.37Å
SANOAPdoub1.42Å1.48Å
SANCAQsing1.76Å1.73Å
OALCAMsing1.43Å1.45Å
CAQCAVsing1.38Å1.39ÅAromatic
CAQCARdoub1.39Å1.39ÅAromatic
CAVCAUdoub1.38Å1.37ÅAromatic
OAWCARsing1.36Å1.37Å
OAWCAXsing1.43Å1.44Å
CARCASsing1.39Å1.40ÅAromatic
CAUCLAYsing1.74Å1.69Å
CAUCATsing1.38Å1.38ÅAromatic
CASCATdoub1.38Å1.38ÅAromatic
CAMH1sing1.09Å1.10Å
CAMH2sing1.09Å1.10Å
CAMH3sing1.09Å1.10Å
CACH4sing1.08Å1.08Å
CAJH5sing1.09Å1.10Å
CAJH6sing1.09Å1.10Å
CAJH7sing1.09Å1.10Å
CAFH8sing1.08Å1.08Å
NAKH9sing0.97Å1.00Å
CAVH10sing1.08Å1.08Å
CATH11sing1.08Å1.08Å
CASH12sing1.08Å1.08Å
CAXH13sing1.09Å1.10Å
CAXH14sing1.09Å1.10Å
CAXH15sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CAJCAINAH122.0°126.2°
CAJCAICAE126.2°126.3°
CAICAJH5109.5°109.5°
CAICAJH6109.5°109.5°
CAICAJH7109.5°109.5°
NAHCAICAE111.8°107.5°
CAINAHOAG106.3°109.7°
CAICAECAF131.8°133.5°
CAICAECAD108.4°106.4°
NAHOAGCAD103.6°109.4°
CAFCAECAD119.8°120.0°
CAECAFCAA119.5°119.6°
CAECAFH8120.3°120.1°
CAECADOAG110.0°107.1°
CAECADCAC123.2°119.7°
CAFCAANAK125.2°119.9°
CAFCAACAB118.9°120.2°
CAACAFH8120.3°120.2°
OAGCADCAC126.8°133.2°
CADCACCAB118.8°120.0°
CADCACH4120.6°120.0°
OAOSANNAK107.1°106.4°
OAOSANOAP116.0°123.2°
OAOSANCAQ107.8°106.4°
NAKCAACAB115.8°119.9°
CAANAKSAN120.6°120.0°
CAANAKH9106.6°120.0°
CAACABCAC119.6°120.5°
CAACABOAL115.2°119.8°
NAKSANOAP109.4°106.4°
NAKSANCAQ106.8°107.2°
SANNAKH9106.6°119.9°
CACCABOAL125.1°119.8°
CABCACH4120.6°120.0°
CABOALCAM118.0°117.0°
OAPSANCAQ109.4°106.4°
SANCAQCAV118.8°120.0°
SANCAQCAR121.1°120.0°
OALCAMH1109.5°109.5°
OALCAMH2109.5°109.5°
OALCAMH3109.4°109.5°
CAVCAQCAR120.2°119.9°
CAQCAVCAU119.6°120.1°
CAQCAVH10120.2°120.0°
CAQCAROAW116.9°120.0°
CAQCARCAS119.5°119.9°
CAVCAUCLAY118.9°120.0°
CAVCAUCAT121.4°120.1°
CAUCAVH10120.2°119.9°
CAROAWCAX119.7°117.0°
OAWCARCAS123.6°120.0°
OAWCAXH13109.5°109.5°
OAWCAXH14109.5°109.4°
OAWCAXH15109.5°109.5°
CARCASCAT119.9°120.0°
CARCASH12120.1°120.0°
CLAYCAUCAT119.6°120.0°
CAUCATCAS119.5°120.0°
CAUCATH11120.3°120.0°
CASCATH11120.3°120.0°
CATCASH12120.0°120.0°
H1CAMH2109.5°109.4°
H1CAMH3109.5°109.5°
H2CAMH3109.4°109.5°
H5CAJH6109.4°109.4°
H5CAJH7109.4°109.6°
H6CAJH7109.5°109.5°
H13CAXH14109.4°109.4°
H13CAXH15109.5°109.5°
H14CAXH15109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CAJCAINAHCAE178.4°179.9°
CAJCAINAHOAG179.4°180.0°
CAJCAICAECAF3.5°0.0°
CAJCAICAECAD179.9°180.0°
CAICAJH5H6120.0°119.9°
CAICAJH5H7120.0°120.1°
CAICAJH6H7120.0°120.0°
NAHCAICAECAF178.2°180.0°
NAHCAICAECAD1.6°0.0°
CAINAHOAGCAD2.0°0.0°
NAHCAICAJH50.0°90.0°
NAHCAICAJH6120.0°150.1°
NAHCAICAJH7120.0°30.1°
CAECAINAHOAG2.2°0.0°
CAICAECAFCAD176.2°180.0°
CAICAECAFCAA180.0°179.8°
CAICAECADOAG0.2°0.0°
CAICAECADCAC179.1°180.0°
CAECAICAJH5178.1°89.9°
CAECAICAJH658.1°30.0°
CAECAICAJH761.9°150.0°
CAICAECAFH80.0°0.0°
NAHOAGCADCAE1.1°0.0°
NAHOAGCADCAC177.8°180.0°
CAECAFCAAH8180.0°179.8°
CAFCAECADOAG177.2°180.0°
CAFCAECADCAC3.8°0.0°
CAECAFCAANAK178.2°180.0°
CAECAFCAACAB2.5°0.5°
CADCAECAFCAA3.8°0.3°
CAECADOAGCAC178.9°180.0°
CAECADCACCAB2.4°0.0°
CAECADCACH4177.6°180.0°
CADCAECAFH8176.2°180.0°
CAFCAANAKCAB175.8°179.5°
CAFCAANAKSAN64.1°35.4°
CAFCAACABCAC1.1°0.5°
CAFCAACABOAL179.4°179.7°
CAFCAANAKH9174.4°144.6°
OAGCADCACCAB178.8°180.0°
OAGCADCACH41.1°0.0°
CADCACCABCAA1.0°0.2°
CADCACCABH4180.0°180.0°
CADCACCABOAL179.6°180.0°
OAOSANNAKCAA48.1°53.3°
OAOSANNAKOAP126.4°132.9°
OAOSANNAKCAQ115.3°113.5°
OAOSANOAPCAQ122.2°123.0°
OAOSANCAQCAV1.5°2.0°
OAOSANCAQCAR176.8°178.2°
OAOSANNAKH9169.6°126.7°
CAANAKSANH9121.5°180.0°
NAKCAACABCAC177.2°180.0°
NAKCAACABOAL3.4°0.2°
CAANAKSANOAP174.5°173.8°
CAANAKSANCAQ67.2°60.2°
NAKCAACAFH81.8°0.2°
CABCAANAKSAN120.2°144.1°
CAACABCACOAL179.4°179.8°
CAACABOALCAM169.0°179.8°
CAACABCACH4179.0°179.8°
CABCAACAFH8177.5°179.7°
CABCAANAKH91.4°36.0°
NAKSANOAPCAQ116.7°114.1°
NAKSANCAQCAV116.3°115.5°
NAKSANCAQCAR62.0°64.8°
CACCABOALCAM10.4°0.0°
CABOALCAMH1180.0°60.0°
CABOALCAMH260.0°60.0°
CABOALCAMH360.0°180.0°
OALCABCACH40.4°0.0°
OAPSANCAQCAV125.4°130.9°
OAPSANCAQCAR56.3°48.8°
OAPSANNAKH963.9°6.2°
SANCAQCAVCAR178.3°179.7°
SANCAQCAVCAU179.3°180.0°
SANCAQCAROAW2.6°0.0°
SANCAQCARCAS179.7°179.7°
CAQSANNAKH954.4°119.8°
SANCAQCAVH100.7°0.0°
OALCAMH1H2120.0°120.0°
OALCAMH1H3120.0°120.0°
OALCAMH2H3120.0°120.0°
CAQCAVCAUH10180.0°180.0°
CAVCAQCAROAW179.2°179.7°
CAVCAQCARCAS1.5°0.5°
CAQCAVCAUCLAY179.4°180.0°
CAQCAVCAUCAT0.1°0.0°
CARCAQCAVCAU1.0°0.2°
CAQCAROAWCAS177.6°179.7°
CAQCAROAWCAX178.4°180.0°
CAQCARCASCAT1.0°0.6°
CARCAQCAVH10179.0°179.7°
CAQCARCASH12179.0°179.7°
CAVCAUCLAYCAT179.6°180.0°
CAVCAUCATCAS0.3°0.0°
CAVCAUCATH11179.7°180.0°
OAWCARCASCAT178.6°179.7°
OAWCARCASH121.4°0.0°
CAROAWCAXH13180.0°60.1°
CAROAWCAXH1460.0°180.0°
CAROAWCAXH1560.0°60.0°
CAXOAWCARCAS3.9°0.3°
OAWCAXH13H14120.0°119.9°
OAWCAXH13H15120.0°120.1°
OAWCAXH14H15120.0°120.0°
CARCASCATCAU0.2°0.4°
CARCASCATH12180.0°179.6°
CARCASCATH11179.9°179.7°
CLAYCAUCATCAS179.9°180.0°
CLAYCAUCAVH100.5°0.0°
CLAYCAUCATH110.1°0.0°
CAUCATCASH11180.0°179.9°
CATCAUCAVH10179.9°180.0°
CAUCATCASH12179.8°180.0°
H1CAMH2H3120.0°120.0°
H5CAJH6H7120.0°120.1°
H11CATCASH120.1°0.1°
H13CAXH14H15120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon