8OG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.09Å | |
| C5' | H5'' | sing | 1.09Å | 1.09Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.09Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | H3' | sing | 1.09Å | 1.09Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.09Å | |
| C2' | H2'' | sing | 1.09Å | 1.09Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.09Å | |
| N9 | C8 | sing | 1.35Å | 1.36Å | |
| N9 | C4 | sing | 1.38Å | 1.39Å | |
| C8 | N7 | sing | 1.35Å | 1.26Å | |
| C8 | O8 | doub | 1.22Å | 1.23Å | |
| N7 | C5 | sing | 1.40Å | 1.39Å | |
| N7 | H7 | sing | 0.97Å | 1.01Å | |
| C5 | C6 | sing | 1.40Å | 1.42Å | |
| C5 | C4 | doub | 1.39Å | 1.40Å | |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C6 | N1 | sing | 1.35Å | 1.39Å | |
| N1 | C2 | sing | 1.36Å | 1.38Å | |
| N1 | H1 | sing | 0.97Å | 1.01Å | |
| C2 | N2 | sing | 1.37Å | 1.33Å | |
| C2 | N3 | doub | 1.31Å | 1.34Å | |
| N2 | H21 | sing | 0.97Å | 1.01Å | |
| N2 | H22 | sing | 0.97Å | 1.01Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 108.3° | 106.8° |
| OP3 | P | OP1 | 108.3° | 109.5° |
| OP3 | P | OP2 | 108.4° | 109.5° |
| OP3 | P | O5' | 102.6° | 109.5° |
| OP1 | P | OP2 | 119.9° | 109.5° |
| OP1 | P | O5' | 108.4° | 109.5° |
| OP2 | P | O5' | 108.0° | 109.5° |
| P | OP2 | HOP2 | 108.4° | 106.8° |
| P | O5' | C5' | 120.6° | 106.8° |
| O5' | C5' | C4' | 111.7° | 109.5° |
| O5' | C5' | H5' | 109.1° | 109.5° |
| O5' | C5' | H5'' | 109.0° | 109.5° |
| C4' | C5' | H5' | 109.0° | 109.5° |
| C4' | C5' | H5'' | 109.0° | 109.4° |
| C5' | C4' | O4' | 110.9° | 110.8° |
| C5' | C4' | C3' | 111.1° | 110.7° |
| C5' | C4' | H4' | 109.1° | 110.5° |
| H5' | C5' | H5'' | 109.1° | 109.5° |
| O4' | C4' | C3' | 107.7° | 103.6° |
| O4' | C4' | H4' | 109.0° | 110.5° |
| C4' | O4' | C1' | 109.1° | 106.9° |
| C3' | C4' | H4' | 109.1° | 110.6° |
| C4' | C3' | O3' | 110.5° | 111.0° |
| C4' | C3' | C2' | 105.0° | 102.1° |
| C4' | C3' | H3' | 109.8° | 110.8° |
| O4' | C1' | C2' | 106.4° | 107.4° |
| O4' | C1' | N9 | 111.1° | 109.9° |
| O4' | C1' | H1' | 108.8° | 109.9° |
| O3' | C3' | C2' | 111.6° | 111.0° |
| O3' | C3' | H3' | 110.3° | 110.8° |
| C3' | O3' | HO3' | 110.4° | 106.9° |
| C2' | C3' | H3' | 109.4° | 110.9° |
| C3' | C2' | C1' | 104.9° | 104.2° |
| C3' | C2' | H2' | 109.7° | 110.5° |
| C3' | C2' | H2'' | 111.0° | 110.5° |
| C1' | C2' | H2' | 109.9° | 110.6° |
| C1' | C2' | H2'' | 111.2° | 110.5° |
| C2' | C1' | N9 | 111.6° | 109.9° |
| C2' | C1' | H1' | 109.4° | 109.8° |
| H2' | C2' | H2'' | 110.1° | 110.4° |
| N9 | C1' | H1' | 109.4° | 109.9° |
| C1' | N9 | C8 | 123.3° | 125.6° |
| C1' | N9 | C4 | 131.9° | 125.7° |
| C8 | N9 | C4 | 104.8° | 108.7° |
| N9 | C8 | N7 | 115.6° | 109.5° |
| N9 | C8 | O8 | 118.9° | 125.3° |
| N9 | C4 | C5 | 105.5° | 107.0° |
| N9 | C4 | N3 | 126.9° | 133.4° |
| N7 | C8 | O8 | 125.5° | 125.3° |
| C8 | N7 | C5 | 105.4° | 107.9° |
| C8 | N7 | H7 | 127.0° | 126.1° |
| C5 | N7 | H7 | 127.5° | 126.0° |
| N7 | C5 | C6 | 131.4° | 134.0° |
| N7 | C5 | C4 | 108.6° | 106.9° |
| C6 | C5 | C4 | 120.0° | 119.1° |
| C5 | C6 | O6 | 128.6° | 120.8° |
| C5 | C6 | N1 | 111.1° | 118.5° |
| C5 | C4 | N3 | 127.6° | 119.6° |
| O6 | C6 | N1 | 120.3° | 120.7° |
| C6 | N1 | C2 | 125.4° | 120.1° |
| C6 | N1 | H1 | 115.9° | 120.0° |
| C2 | N1 | H1 | 118.7° | 119.9° |
| N1 | C2 | N2 | 116.3° | 119.1° |
| N1 | C2 | N3 | 123.9° | 121.7° |
| N2 | C2 | N3 | 119.8° | 119.2° |
| C2 | N2 | H21 | 120.0° | 120.0° |
| C2 | N2 | H22 | 120.0° | 120.0° |
| C2 | N3 | C4 | 112.0° | 121.1° |
| H21 | N2 | H22 | 120.1° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 124.9° | 120.0° |
| OP3 | P | OP1 | O5' | 110.6° | 120.0° |
| OP3 | P | OP2 | O5' | 110.5° | 120.0° |
| OP3 | P | OP2 | HOP2 | 180.0° | 59.9° |
| OP3 | P | O5' | C5' | 77.7° | 180.0° |
| HOP3 | OP3 | P | OP1 | 180.0° | 59.9° |
| HOP3 | OP3 | P | OP2 | 48.5° | 60.0° |
| HOP3 | OP3 | P | O5' | 65.6° | 180.0° |
| OP1 | P | OP2 | O5' | 124.6° | 120.0° |
| OP1 | P | OP2 | HOP2 | 55.1° | 180.0° |
| OP1 | P | O5' | C5' | 36.7° | 60.0° |
| OP2 | P | O5' | C5' | 168.0° | 60.0° |
| O5' | P | OP2 | HOP2 | 69.5° | 60.1° |
| P | O5' | C5' | C4' | 175.6° | 180.0° |
| P | O5' | C5' | H5' | 63.9° | 60.0° |
| P | O5' | C5' | H5'' | 55.2° | 60.0° |
| O5' | C5' | C4' | H5' | 120.6° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.4° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.0° | 120.0° |
| O5' | C5' | C4' | O4' | 62.0° | 65.7° |
| O5' | C5' | C4' | C3' | 57.7° | 179.9° |
| O5' | C5' | C4' | H4' | 177.9° | 57.2° |
| C4' | C5' | H5' | H5'' | 118.9° | 119.9° |
| C5' | C4' | O4' | C3' | 121.7° | 118.7° |
| C5' | C4' | O4' | H4' | 120.1° | 122.8° |
| C5' | C4' | C3' | H4' | 120.3° | 122.7° |
| C5' | C4' | O4' | C1' | 131.6° | 158.6° |
| C5' | C4' | C3' | O3' | 125.2° | 86.0° |
| C5' | C4' | C3' | C2' | 114.4° | 155.7° |
| C5' | C4' | C3' | H3' | 3.2° | 37.6° |
| H5' | C5' | C4' | O4' | 58.5° | 174.3° |
| H5' | C5' | C4' | C3' | 178.3° | 59.9° |
| H5' | C5' | C4' | H4' | 61.5° | 62.9° |
| H5'' | C5' | C4' | O4' | 177.5° | 54.3° |
| H5'' | C5' | C4' | C3' | 62.8° | 60.1° |
| H5'' | C5' | C4' | H4' | 57.5° | 177.1° |
| O4' | C4' | C3' | H4' | 118.1° | 118.5° |
| O4' | C4' | C3' | O3' | 113.2° | 155.2° |
| O4' | C4' | C3' | C2' | 7.2° | 36.9° |
| O4' | C4' | C3' | H3' | 124.8° | 81.2° |
| C4' | O4' | C1' | C2' | 23.0° | 26.3° |
| C4' | O4' | C1' | N9 | 144.7° | 145.8° |
| C4' | O4' | C1' | H1' | 94.7° | 93.1° |
| C3' | C4' | O4' | C1' | 9.8° | 39.8° |
| C4' | C3' | O3' | C2' | 116.4° | 112.8° |
| C4' | C3' | O3' | H3' | 121.6° | 123.6° |
| C4' | C3' | C2' | H3' | 117.8° | 118.1° |
| C4' | C3' | O3' | HO3' | 180.0° | 174.2° |
| C4' | C3' | C2' | C1' | 20.5° | 20.8° |
| C4' | C3' | C2' | H2' | 97.5° | 97.9° |
| C4' | C3' | C2' | H2'' | 140.7° | 139.6° |
| H4' | C4' | O4' | C1' | 108.3° | 78.6° |
| H4' | C4' | C3' | O3' | 4.9° | 36.7° |
| H4' | C4' | C3' | C2' | 125.4° | 81.6° |
| H4' | C4' | C3' | H3' | 117.1° | 160.3° |
| O4' | C1' | C2' | C3' | 27.0° | 2.0° |
| O4' | C1' | C2' | N9 | 121.4° | 119.5° |
| O4' | C1' | C2' | H1' | 117.4° | 119.5° |
| O4' | C1' | C2' | H2' | 90.9° | 120.7° |
| O4' | C1' | C2' | H2'' | 147.0° | 116.8° |
| O4' | C1' | N9 | H1' | 120.2° | 121.0° |
| O4' | C1' | N9 | C8 | 109.1° | 58.3° |
| O4' | C1' | N9 | C4 | 69.6° | 121.7° |
| O3' | C3' | C2' | H3' | 122.4° | 123.6° |
| O3' | C3' | C2' | C1' | 99.3° | 139.2° |
| O3' | C3' | C2' | H2' | 142.7° | 20.4° |
| O3' | C3' | C2' | H2'' | 20.9° | 102.1° |
| C2' | C3' | O3' | HO3' | 63.5° | 61.4° |
| C3' | C2' | C1' | H2' | 117.9° | 118.7° |
| C3' | C2' | C1' | H2'' | 120.0° | 118.7° |
| C3' | C2' | H2' | H2'' | 122.3° | 122.6° |
| C3' | C2' | C1' | N9 | 148.4° | 121.5° |
| C3' | C2' | C1' | H1' | 90.4° | 117.5° |
| H3' | C3' | O3' | HO3' | 58.4° | 62.2° |
| H3' | C3' | C2' | C1' | 138.3° | 97.2° |
| H3' | C3' | C2' | H2' | 20.3° | 144.0° |
| H3' | C3' | C2' | H2'' | 101.5° | 21.5° |
| C1' | C2' | H2' | H2'' | 122.8° | 122.6° |
| C2' | C1' | N9 | H1' | 121.2° | 121.0° |
| C2' | C1' | N9 | C8 | 132.3° | 59.7° |
| C2' | C1' | N9 | C4 | 48.9° | 120.3° |
| H2' | C2' | C1' | N9 | 30.5° | 119.8° |
| H2' | C2' | C1' | H1' | 151.7° | 1.2° |
| H2'' | C2' | C1' | N9 | 91.6° | 2.7° |
| H2'' | C2' | C1' | H1' | 29.6° | 123.7° |
| C1' | N9 | C8 | C4 | 179.1° | 180.0° |
| C1' | N9 | C8 | N7 | 178.9° | 180.0° |
| C1' | N9 | C8 | O8 | 1.5° | 0.0° |
| C1' | N9 | C4 | C5 | 178.8° | 180.0° |
| C1' | N9 | C4 | N3 | 1.2° | 0.1° |
| H1' | C1' | N9 | C8 | 11.1° | 179.3° |
| H1' | C1' | N9 | C4 | 170.2° | 0.6° |
| N9 | C8 | N7 | O8 | 179.5° | 179.9° |
| N9 | C8 | N7 | C5 | 0.0° | 0.0° |
| N9 | C8 | N7 | H7 | 177.0° | 180.0° |
| C8 | N9 | C4 | C5 | 0.1° | 0.0° |
| C8 | N9 | C4 | N3 | 179.9° | 179.9° |
| C4 | N9 | C8 | N7 | 0.1° | 0.0° |
| C4 | N9 | C8 | O8 | 179.4° | 179.9° |
| N9 | C4 | C5 | N7 | 0.1° | 0.0° |
| N9 | C4 | C5 | C6 | 180.0° | 180.0° |
| N9 | C4 | C5 | N3 | 180.0° | 179.9° |
| N9 | C4 | N3 | C2 | 179.9° | 179.9° |
| C8 | N7 | C5 | H7 | 176.9° | 179.9° |
| C8 | N7 | C5 | C6 | 179.9° | 180.0° |
| C8 | N7 | C5 | C4 | 0.0° | 0.0° |
| O8 | C8 | N7 | C5 | 179.4° | 180.0° |
| O8 | C8 | N7 | H7 | 2.5° | 0.1° |
| N7 | C5 | C6 | C4 | 179.9° | 180.0° |
| N7 | C5 | C6 | O6 | 0.3° | 0.0° |
| N7 | C5 | C6 | N1 | 179.8° | 179.7° |
| N7 | C5 | C4 | N3 | 179.9° | 180.0° |
| H7 | N7 | C5 | C6 | 3.0° | 0.0° |
| H7 | N7 | C5 | C4 | 176.9° | 180.0° |
| C5 | C6 | O6 | N1 | 180.0° | 179.7° |
| C5 | C6 | N1 | C2 | 0.1° | 0.5° |
| C5 | C6 | N1 | H1 | 180.0° | 180.0° |
| C6 | C5 | C4 | N3 | 0.0° | 0.0° |
| C4 | C5 | C6 | O6 | 179.9° | 180.0° |
| C4 | C5 | C6 | N1 | 0.1° | 0.3° |
| C5 | C4 | N3 | C2 | 0.0° | 0.0° |
| O6 | C6 | N1 | C2 | 179.9° | 179.7° |
| O6 | C6 | N1 | H1 | 0.1° | 0.2° |
| C6 | N1 | C2 | H1 | 179.9° | 179.5° |
| C6 | N1 | C2 | N2 | 179.3° | 179.7° |
| C6 | N1 | C2 | N3 | 0.1° | 0.5° |
| N1 | C2 | N2 | N3 | 179.4° | 179.8° |
| N1 | C2 | N2 | H21 | 179.4° | 179.8° |
| N1 | C2 | N2 | H22 | 0.7° | 0.6° |
| N1 | C2 | N3 | C4 | 0.0° | 0.2° |
| H1 | N1 | C2 | N2 | 0.6° | 0.2° |
| H1 | N1 | C2 | N3 | 180.0° | 180.0° |
| C2 | N2 | H21 | H22 | 179.9° | 179.6° |
| N2 | C2 | N3 | C4 | 179.4° | 180.0° |
| N3 | C2 | N2 | H21 | 0.0° | 0.0° |
| N3 | C2 | N2 | H22 | 179.9° | 179.6° |
