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SummaryGeometryRelated PDB entries

8MG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
POP3sing1.62Å1.49Å
POP2sing1.62Å1.49Å
PO5'sing1.62Å1.59Å
POP1doub1.50Å73.44Å
OP3H3Psing0.98Å0.95Å
OP2H2Psing0.98Å0.95Å
O5'C5'sing1.42Å1.43Å
N9C4sing1.37Å1.37ÅAromatic
N9C8sing1.38Å1.37ÅAromatic
N9C1'sing1.46Å1.46Å
C4N3sing1.35Å1.35Å
C4C5doub1.37Å1.38ÅAromatic
N3C2doub1.32Å1.32Å
C2N2sing1.37Å1.34Å
C2N1sing1.42Å1.37Å
N2H21sing0.99Å1.01Å
N2H22sing0.99Å1.01Å
N1C6sing1.40Å1.39Å
N1H1sing1.02Å1.01Å
C6O6doub1.22Å1.24Å
C6C5sing1.44Å1.42Å
C5N7sing1.36Å1.39ÅAromatic
N7C8doub1.32Å1.31ÅAromatic
C8Csing1.48Å1.34Å
C2'C1'sing1.52Å1.53Å
C2'C3'sing1.51Å1.52Å
C2'H2'sing1.10Å1.09Å
C2'H2''sing1.09Å1.09Å
C5'C4'sing1.52Å1.51Å
C5'H5'sing1.09Å1.09Å
C5'H5''sing1.09Å1.09Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.52Å1.52Å
C4'H4'sing1.10Å1.09Å
O4'C1'sing1.44Å1.42Å
C1'H1'sing1.10Å1.09Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.09Å
O3'HO3'sing0.97Å0.95Å
CHC1sing1.10Å1.09Å
CHC2sing1.10Å1.09Å
CHC3sing1.10Å1.09Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OP3POP2119.5°103.3°
OP3PO5'108.2°103.7°
OP3POP138.3°115.3°
POP3H3P119.6°118.9°
OP2PO5'108.1°102.9°
OP2POP186.4°115.0°
POP2H2P119.5°118.9°
O5'POP1142.2°115.0°
PO5'C5'121.1°118.5°
O5'C5'C4'110.4°108.7°
O5'C5'H5'109.5°109.2°
O5'C5'H5''109.6°109.2°
C4N9C8106.4°106.4°
C4N9C1'127.1°126.7°
N9C4N3126.1°125.9°
N9C4C5105.3°105.0°
C8N9C1'126.5°126.8°
N9C8N7113.1°112.5°
N9C8C123.9°121.7°
N9C1'C2'114.6°114.3°
N9C1'O4'107.7°110.0°
N9C1'H1'108.3°105.9°
N3C4C5128.6°129.1°
C4N3C2111.9°113.0°
C4C5C6118.8°119.2°
C4C5N7110.8°112.1°
N3C2N2119.6°122.1°
N3C2N1124.1°122.6°
N2C2N1116.3°115.3°
C2N2H21119.6°118.2°
C2N2H22120.1°118.3°
C2N1C6125.0°125.2°
C2N1H1118.0°117.4°
H21N2H22120.3°123.5°
C6N1H1117.0°117.4°
N1C6O6119.8°125.4°
N1C6C5111.6°110.9°
O6C6C5128.6°123.8°
C6C5N7130.4°128.7°
C5N7C8104.3°103.9°
N7C8C121.3°125.7°
C8CHC1109.4°111.0°
C8CHC2109.5°111.9°
C8CHC3109.4°111.9°
C1'C2'C3'104.8°101.6°
C1'C2'H2'112.3°110.5°
C1'C2'H2''109.7°111.7°
C2'C1'O4'107.6°106.7°
C2'C1'H1'110.6°111.7°
C3'C2'H2'111.2°110.0°
C3'C2'H2''111.3°114.2°
C2'C3'C4'103.4°103.2°
C2'C3'O3'110.8°108.4°
C2'C3'H3'111.7°113.7°
H2'C2'H2''107.6°108.7°
C4'C5'H5'109.1°110.1°
C4'C5'H5''109.0°110.1°
C5'C4'O4'110.1°108.0°
C5'C4'C3'114.9°112.7°
C5'C4'H4'107.6°109.4°
H5'C5'H5''109.1°109.6°
O4'C4'C3'104.7°106.8°
O4'C4'H4'113.1°107.7°
C4'O4'C1'109.4°108.7°
C3'C4'H4'106.6°112.0°
C4'C3'O3'110.1°109.6°
C4'C3'H3'111.3°114.0°
O4'C1'H1'107.9°108.1°
O3'C3'H3'109.4°107.8°
C3'O3'HO3'110.8°106.6°
HC1CHC2109.6°107.9°
HC1CHC3109.4°107.8°
HC2CHC3109.5°106.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OP3POP2O5'124.2°107.7°
OP3POP2OP120.1°126.5°
OP3PO5'OP122.4°126.8°
OP3POP2H2P179.9°78.5°
OP3PO5'C5'14.5°53.2°
OP2PO5'OP1108.3°125.8°
OP2POP3H3P180.0°77.5°
OP2PO5'C5'145.3°54.2°
O5'POP3H3P55.8°175.4°
O5'POP2H2P55.8°173.9°
PO5'C5'C4'145.8°180.0°
PO5'C5'H5'94.1°59.9°
PO5'C5'H5''25.7°59.9°
OP1POP3H3P146.3°48.8°
OP1POP2H2P159.8°48.0°
OP1PO5'C5'37.0°180.0°
O5'C5'C4'H5'120.4°119.6°
O5'C5'C4'H5''120.5°119.5°
O5'C5'H5'H5''120.0°119.6°
O5'C5'C4'O4'1.1°61.8°
O5'C5'C4'C3'119.0°179.5°
O5'C5'C4'H4'122.5°55.2°
C4N9C8C1'180.0°180.0°
N9C4N3C5179.8°179.9°
N9C4N3C2179.8°180.0°
N9C4C5C6179.8°180.0°
N9C4C5N70.1°0.0°
C4N9C8N70.2°0.0°
C4N9C8C164.9°179.9°
C4N9C1'C2'30.5°116.6°
C4N9C1'O4'89.2°3.4°
C4N9C1'H1'154.4°120.0°
C8N9C4N3179.9°180.0°
C8N9C4C50.2°0.0°
N9C8N7C50.2°0.0°
N9C8N7C165.6°180.0°
C8N9C1'C2'149.6°63.4°
C8N9C1'O4'90.8°176.6°
C8N9C1'H1'25.6°60.1°
N9C8CHC172.7°140.2°
N9C8CHC2167.2°99.2°
N9C8CHC347.2°19.7°
C1'N9C4N30.0°0.0°
C1'N9C4C5179.8°179.9°
C1'N9C8N7179.8°179.9°
C1'N9C8C15.1°0.1°
N9C1'C2'O4'119.7°121.8°
N9C1'C2'H1'122.7°120.3°
N9C1'C2'C3'114.1°154.5°
N9C1'C2'H2'6.7°37.8°
N9C1'C2'H2''126.3°83.3°
N9C1'O4'C4'139.1°141.8°
N9C1'O4'H1'116.7°115.2°
C4N3C2N2179.8°180.0°
C4N3C2N10.1°0.0°
N3C4C5C60.1°0.0°
N3C4C5N7180.0°180.0°
C5C4N3C20.0°0.0°
C4C5C6N10.0°0.0°
C4C5C6O6180.0°180.0°
C4C5C6N7179.9°180.0°
C4C5N7C80.0°0.0°
N3C2N2N1179.9°180.0°
N3C2N2H210.0°136.4°
N3C2N2H22179.4°43.5°
N3C2N1C60.2°0.0°
N3C2N1H1179.7°180.0°
C2N2H21H22179.4°180.0°
N2C2N1C6179.8°180.0°
N2C2N1H10.3°0.0°
N1C2N2H21179.9°43.6°
N1C2N2H220.5°136.4°
C2N1C6H1179.9°179.9°
C2N1C6O6179.9°180.0°
C2N1C6C50.1°0.0°
N1C6O6C5180.0°180.0°
N1C6C5N7179.9°180.0°
H1N1C6O60.2°0.0°
H1N1C6C5179.8°180.0°
O6C6C5N70.1°0.0°
C6C5N7C8179.9°180.0°
C5N7C8C165.4°180.0°
N7C8CHC1123.4°39.8°
N7C8CHC23.2°80.8°
N7C8CHC3116.8°160.2°
C8CHC1HC2120.1°122.9°
C8CHC1HC3119.9°122.9°
C8CHC2HC3120.0°122.3°
C1'C2'C3'H2'121.5°117.0°
C1'C2'C3'H2''118.5°120.4°
C1'C2'H2'H2''120.8°122.9°
C2'C1'O4'C4'15.1°17.3°
C1'C2'C3'C4'22.5°34.8°
C2'C1'O4'H1'119.3°120.3°
C1'C2'C3'O3'140.4°81.3°
C1'C2'C3'H3'97.3°158.8°
C3'C2'H2'H2''122.1°125.7°
C2'C3'C4'C5'152.5°92.6°
C2'C3'C4'O4'31.6°25.9°
C2'C3'C4'O3'118.4°115.3°
C2'C3'C4'H3'120.1°123.7°
C2'C3'C4'H4'88.4°143.6°
C3'C2'C1'O4'5.6°32.7°
C3'C2'C1'H1'123.2°85.2°
C2'C3'O3'H3'123.6°123.5°
C2'C3'O3'HO3'180.0°65.3°
H2'C2'C3'C4'144.0°82.2°
H2'C2'C1'O4'126.4°84.0°
H2'C2'C1'H1'116.0°158.1°
H2'C2'C3'O3'98.1°161.6°
H2'C2'C3'H3'24.2°41.7°
H2''C2'C3'C4'96.0°155.2°
H2''C2'C1'O4'114.0°154.9°
H2''C2'C1'H1'3.6°37.0°
H2''C2'C3'O3'21.9°39.1°
H2''C2'C3'H3'144.2°80.8°
C4'C5'H5'H5''119.0°121.2°
C5'C4'O4'C3'124.0°121.5°
C5'C4'O4'H4'120.3°118.0°
C5'C4'C3'H4'119.1°123.8°
C5'C4'O4'C1'153.6°116.0°
C5'C4'C3'O3'89.1°152.1°
C5'C4'C3'H3'32.4°31.2°
H5'C5'C4'O4'121.5°57.8°
H5'C5'C4'C3'120.6°60.0°
H5'C5'C4'H4'2.1°174.7°
H5''C5'C4'O4'119.4°178.7°
H5''C5'C4'C3'1.6°60.9°
H5''C5'C4'H4'117.0°64.3°
O4'C4'C3'H4'120.1°117.7°
C4'O4'C1'H1'104.3°103.1°
O4'C4'C3'O3'150.0°89.4°
O4'C4'C3'H3'88.5°149.7°
C3'C4'O4'C1'29.6°5.5°
C4'C3'O3'H3'122.6°124.6°
C4'C3'O3'HO3'66.2°46.6°
H4'C4'O4'C1'86.1°126.0°
H4'C4'C3'O3'30.0°28.3°
H4'C4'C3'H3'151.5°92.6°
H3'C3'O3'HO3'56.4°171.2°
HC1CHC2HC3120.0°115.3°

226262

PDB entries from 2024-10-16

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