Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8KD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O26C8sing1.43Å1.42Å
C5C8sing1.53Å1.53Å
C5C4sing1.53Å1.53Å
C5C6sing1.53Å1.53Å
C8C9sing1.53Å1.53Å
C4C3sing1.53Å1.54Å
C6C1sing1.53Å1.54Å
C9C10sing1.53Å1.53Å
C9C7sing1.53Å1.53Å
C10C3sing1.53Å1.54Å
C3C2sing1.53Å1.56Å
C1C7sing1.53Å1.53Å
C1C2sing1.53Å1.55Å
C11C2sing1.53Å1.56Å
C11C14sing1.51Å1.51Å
C2C12sing1.53Å1.57Å
C21C14doub1.38Å1.39ÅAromatic
C21C20sing1.38Å1.39ÅAromatic
C14C13sing1.38Å1.39ÅAromatic
C20C19doub1.38Å1.38ÅAromatic
C12C15sing1.51Å1.51Å
C13C18doub1.38Å1.38ÅAromatic
C19C18sing1.38Å1.38ÅAromatic
C15O17doub1.21Å1.22Å
C15N16sing1.35Å1.35Å
N16C22sing1.48Å1.46Å
N16C24sing1.48Å1.46Å
C22C23sing1.54Å1.57Å
C24C23sing1.54Å1.56Å
C23O25sing1.43Å1.43Å
C13H44sing1.08Å1.08Å
C18H45sing1.08Å1.08Å
C19H46sing1.08Å1.08Å
C20H47sing1.08Å1.08Å
C21H48sing1.08Å1.08Å
C22H50sing1.09Å1.10Å
C22H49sing1.09Å1.10Å
C23H51sing1.09Å1.10Å
C24H52sing1.09Å1.10Å
C24H53sing1.09Å1.10Å
C11H40sing1.09Å1.10Å
C11H41sing1.09Å1.10Å
C12H42sing1.09Å1.10Å
C12H43sing1.09Å1.10Å
C1H27sing1.09Å1.10Å
C3H28sing1.09Å1.10Å
C4H29sing1.09Å1.10Å
C4H30sing1.09Å1.10Å
C5H31sing1.09Å1.10Å
C6H33sing1.09Å1.10Å
C6H32sing1.09Å1.10Å
C7H34sing1.09Å1.10Å
C7H35sing1.09Å1.10Å
C8H36sing1.09Å1.10Å
C9H37sing1.09Å1.10Å
C10H39sing1.09Å1.10Å
C10H38sing1.09Å1.10Å
O25H54sing0.97Å0.95Å
O26H55sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O26C8C5110.9°109.5°
O26C8C9111.2°109.5°
O26C8H36109.4°109.5°
C8O26H55109.5°114.0°
C8C5C4109.5°109.5°
C8C5C6108.8°109.5°
C5C8C9109.3°109.4°
C8C5H31109.7°109.4°
C5C8H36107.9°109.5°
C4C5C6109.5°109.5°
C5C4C3109.5°109.4°
C5C4H29109.5°109.5°
C5C4H30109.5°109.5°
C4C5H31109.7°109.5°
C5C6C1109.3°109.5°
C6C5H31109.7°109.4°
C5C6H33109.5°109.5°
C5C6H32109.5°109.5°
C8C9C10109.7°109.5°
C8C9C7108.9°109.5°
C9C8H36108.0°109.5°
C8C9H37109.8°109.4°
C4C3C10106.7°109.5°
C4C3C2112.6°109.5°
C4C3H28108.3°109.5°
C3C4H29109.5°109.5°
C3C4H30109.4°109.5°
C6C1C7107.3°109.5°
C6C1C2112.4°109.4°
C6C1H27108.1°109.5°
C1C6H33109.5°109.5°
C1C6H32109.5°109.5°
C10C9C7109.0°109.5°
C9C10C3109.7°109.5°
C10C9H37109.7°109.5°
C9C10H39109.4°109.5°
C9C10H38109.4°109.5°
C9C7C1109.4°109.5°
C9C7H34109.5°109.4°
C9C7H35109.5°109.5°
C7C9H37109.8°109.5°
C10C3C2112.6°109.5°
C10C3H28108.3°109.5°
C3C10H39109.4°109.5°
C3C10H38109.4°109.5°
C3C2C1103.2°109.5°
C3C2C11110.7°109.5°
C3C2C12111.4°109.5°
C2C3H28108.1°109.5°
C7C1C2112.9°109.5°
C7C1H27108.1°109.5°
C1C7H34109.5°109.4°
C1C7H35109.5°109.5°
C1C2C11107.7°109.5°
C1C2C12112.1°109.5°
C2C1H27107.9°109.5°
C2C11C14118.3°109.5°
C11C2C12111.3°109.4°
C2C11H40107.2°109.5°
C2C11H41107.2°109.5°
C11C14C21121.0°120.0°
C11C14C13120.6°120.0°
C14C11H40107.2°109.5°
C14C11H41107.2°109.5°
C2C12C15118.2°109.5°
C2C12H42107.2°109.5°
C2C12H43107.2°109.5°
C14C21C20120.8°120.0°
C21C14C13118.4°120.0°
C14C21H48119.6°119.9°
C21C20C19120.2°120.0°
C21C20H47119.9°120.0°
C20C21H48119.6°120.0°
C14C13C18120.9°120.0°
C14C13H44119.6°120.0°
C20C19C18119.7°120.0°
C20C19H46120.2°120.0°
C19C20H47119.9°120.0°
C12C15O17120.1°120.0°
C12C15N16118.7°120.0°
C15C12H42107.3°109.4°
C15C12H43107.2°109.5°
C13C18C19120.1°120.0°
C18C13H44119.6°120.0°
C13C18H45119.9°120.0°
C19C18H45120.0°119.9°
C18C19H46120.2°120.0°
O17C15N16121.2°120.0°
C15N16C22134.4°134.5°
C15N16C24131.2°134.5°
C22N16C2494.3°91.0°
N16C22C2387.5°86.1°
N16C22H50114.6°113.8°
N16C22H49114.6°113.9°
N16C24C2387.7°86.1°
N16C24H52114.6°113.8°
N16C24H53114.6°113.9°
C22C23C2486.8°86.3°
C22C23O25110.8°113.8°
C23C22H50114.7°113.8°
C23C22H49114.7°113.8°
C22C23H51113.7°113.7°
C24C23O25112.2°113.7°
C24C23H51113.8°113.8°
C23C24H52114.6°113.8°
C23C24H53114.6°113.8°
O25C23H51116.1°113.0°
C23O25H54109.5°114.0°
H50C22H49109.5°112.9°
H52C24H53109.5°113.0°
H40C11H41109.4°109.4°
H42C12H43109.5°109.4°
H29C4H30109.5°109.5°
H33C6H32109.5°109.5°
H34C7H35109.5°109.5°
H39C10H38109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O26C8C5C9123.0°120.0°
O26C8C5H36119.8°120.0°
O26C8C5C464.0°60.0°
O26C8C5C6176.4°180.0°
O26C8C9H36120.0°120.0°
O26C8C9C1064.1°60.0°
O26C8C9C7176.7°180.0°
O26C8C5H3156.4°60.1°
O26C8C9H3756.5°60.0°
C8C5C4C6119.2°120.0°
C8C5C4H31120.4°120.0°
C8C5C6H31120.0°119.9°
C5C8C9H36117.2°120.0°
C8C5C4C361.9°60.0°
C8C5C6C161.9°60.0°
C5C8C9C1058.7°60.0°
C5C8C9C760.5°60.0°
C8C5C4H2958.1°180.0°
C8C5C4H30178.1°60.0°
C8C5C6H33178.1°60.0°
C8C5C6H3258.0°179.9°
C5C8C9H37179.3°180.0°
C5C8O26H55180.0°179.9°
C4C5C6H31120.4°120.0°
C4C5C8C959.0°60.0°
C5C4C3H29120.0°120.0°
C5C4C3H30120.0°120.0°
C4C5C6C157.7°60.0°
C5C4C3C1062.6°60.0°
C5C4C3C261.5°60.0°
C5C4C3H28179.0°180.0°
C5C4H29H30120.0°120.0°
C4C5C6H3362.3°180.0°
C4C5C6H32177.6°60.0°
C4C5C8H36176.2°180.0°
C6C5C8C960.6°60.0°
C6C5C4C357.2°60.0°
C5C6C1H33120.0°120.0°
C5C6C1H32119.9°120.0°
C5C6C1C762.2°60.0°
C5C6C1C262.5°60.0°
C5C6C1H27178.6°180.0°
C6C5C4H29177.2°60.0°
C6C5C4H3062.8°180.0°
C5C6H33H32120.0°120.0°
C6C5C8H3656.6°60.0°
C8C9C10C7119.1°120.0°
C8C9C10H37120.7°120.0°
C8C9C7H37120.2°119.9°
C8C9C10C361.3°60.0°
C8C9C7C161.8°60.1°
C9C8C5H31179.4°180.0°
C8C9C7H3458.1°180.0°
C8C9C7H35178.2°60.0°
C8C9C10H39178.7°60.0°
C8C9C10H3858.8°180.0°
C9C8O26H5558.1°60.0°
C4C3C10C962.2°60.0°
C4C3C10C2124.1°120.0°
C4C3C10H28116.4°120.0°
C4C3C2H28119.6°120.0°
C4C3C2C160.7°60.0°
C4C3C2C1154.4°60.0°
C4C3C2C12178.8°180.0°
C3C4H29H30120.0°120.0°
C3C4C5H31177.6°180.0°
C4C3C10H39177.8°60.0°
C4C3C10H3857.8°180.0°
C6C1C7C962.2°60.0°
C6C1C2C361.2°60.0°
C6C1C7C2124.4°120.0°
C6C1C7H27116.3°120.0°
C6C1C2H27119.1°120.0°
C6C1C2C1156.0°60.0°
C6C1C2C12178.8°180.0°
C1C6C5H31178.1°180.0°
C1C6H33H32120.1°120.0°
C6C1C7H3457.8°180.0°
C6C1C7H35177.8°60.0°
C10C9C7H37120.2°120.1°
C9C10C3H39120.0°120.0°
C9C10C3H38120.0°120.0°
C9C10C3C261.9°60.0°
C10C9C7C157.8°59.9°
C9C10C3H28178.6°180.0°
C10C9C7H34177.8°60.0°
C10C9C7H3562.2°180.0°
C10C9C8H36175.9°180.0°
C9C10H39H38119.9°120.0°
C7C9C10C357.9°60.0°
C9C7C1H34120.0°119.9°
C9C7C1H35120.0°120.0°
C9C7C1C262.2°59.9°
C9C7C1H27178.5°180.0°
C9C7H34H35120.0°120.0°
C7C9C8H3656.7°60.0°
C7C9C10H3962.2°180.0°
C7C9C10H38177.9°60.0°
C10C3C2H28119.7°120.0°
C10C3C2C160.1°60.0°
C10C3C2C11175.1°180.0°
C10C3C2C1260.4°60.0°
C10C3C4H2957.5°180.0°
C10C3C4H30177.4°60.0°
C3C10C9H37178.1°180.0°
C3C10H39H38119.9°120.0°
C3C2C1C760.4°60.0°
C3C2C1C11117.2°120.0°
C3C2C1C12120.0°120.0°
C3C2C11C12124.5°120.0°
C3C2C11C1489.4°174.6°
C3C2C12C15167.6°61.3°
C3C2C11H4031.8°54.5°
C3C2C11H41149.3°65.4°
C3C2C12H4271.1°58.7°
C3C2C12H4346.4°178.6°
C3C2C1H27179.8°180.0°
C2C3C4H29178.5°60.0°
C2C3C4H3058.5°180.0°
C2C3C10H3958.1°180.0°
C2C3C10H38178.1°60.0°
C7C1C2H27119.4°120.0°
C7C1C2C11177.5°180.0°
C7C1C2C1259.7°60.0°
C7C1C6H33177.8°60.0°
C7C1C6H3257.7°180.0°
C1C7H34H35120.0°120.0°
C1C7C9H37178.0°180.0°
C1C2C11C12123.3°120.0°
C1C2C11C14158.4°65.4°
C1C2C12C1577.2°178.7°
C1C2C11H4080.4°174.6°
C1C2C11H4137.1°54.6°
C1C2C12H4244.0°61.3°
C1C2C12H43161.5°58.6°
C1C2C3H28179.7°180.0°
C2C1C6H3357.5°180.0°
C2C1C6H32177.6°60.0°
C2C1C7H34177.8°60.0°
C2C1C7H3557.8°180.0°
C2C11C14H40121.3°120.0°
C2C11C14H41121.3°120.0°
C2C11C14C2165.4°94.8°
C2C11C14C13114.3°85.8°
C11C2C12C1543.5°58.6°
C2C11H40H41116.0°120.0°
C11C2C12H42164.8°178.6°
C11C2C12H4377.7°61.4°
C11C2C1H2763.1°60.0°
C11C2C3H2865.2°60.0°
C14C11C2C1235.1°54.6°
C11C14C21C13179.6°179.4°
C11C14C21C20178.5°180.0°
C11C14C13C18178.5°180.0°
C11C14C13H441.5°0.3°
C11C14C21H481.5°0.6°
C14C11H40H41116.0°120.0°
C2C12C15H42121.2°120.0°
C2C12C15H43121.2°120.1°
C2C12C15O1740.0°2.8°
C2C12C15N16138.2°177.2°
C12C2C11H40156.3°65.4°
C12C2C11H4186.2°174.7°
C2C12H42H43116.0°120.0°
C12C2C1H2759.7°60.0°
C12C2C3H2859.2°60.0°
C14C21C20H48180.0°179.4°
C14C21C20C190.5°0.3°
C21C14C13C181.2°0.6°
C21C14C13H44178.8°179.7°
C14C21C20H47179.5°179.7°
C21C14C11H4055.9°25.3°
C21C14C11H41173.3°145.2°
C20C21C14C131.1°0.6°
C21C20C19H47180.0°179.9°
C21C20C19C180.1°0.0°
C21C20C19H46179.9°180.0°
C14C13C18H44180.0°179.7°
C14C13C18C190.7°0.3°
C14C13C18H45179.3°179.7°
C13C14C21H48178.9°180.0°
C13C14C11H40124.5°154.1°
C13C14C11H417.0°34.2°
C20C19C18C130.0°0.0°
C20C19C18H46180.0°180.0°
C20C19C18H45180.0°180.0°
C19C20C21H48179.5°179.7°
C12C15O17N16178.1°180.0°
C12C15N16C2215.4°180.0°
C12C15N16C24169.8°0.0°
C15C12H42H43116.1°119.9°
C13C18C19H45180.0°179.9°
C13C18C19H46180.0°180.0°
C19C18C13H44179.3°179.9°
C18C19C20H47179.9°179.9°
O17C15N16C22162.8°0.0°
O17C15N16C2412.1°180.0°
O17C15C12H4281.3°117.2°
O17C15C12H43161.2°122.9°
C15N16C22C24176.1°180.0°
C15N16C22C23161.2°155.4°
C15N16C24C23161.3°155.4°
C15N16C22H5082.7°41.1°
C15N16C22H4945.1°90.3°
C15N16C24H5245.2°90.3°
C15N16C24H5382.6°41.1°
N16C15C12H42100.6°62.8°
N16C15C12H4316.9°57.1°
N16C22C23H50116.0°114.3°
N16C22C23H49116.1°114.4°
C22N16C24C2315.0°24.6°
N16C22C23O25126.5°138.0°
N16C22H50H49130.4°131.8°
N16C22C23H51100.7°90.8°
C22N16C24H52131.1°89.6°
C22N16C24H53101.1°138.9°
N16C24C23H52116.1°114.3°
N16C24C23H53116.1°114.4°
N16C24C23O25125.1°138.0°
C24N16C22H50101.2°139.0°
C24N16C22H49131.0°89.7°
N16C24C23H51100.6°90.7°
N16C24H52H53130.4°131.9°
C22C23C24O25111.2°114.4°
C22C23C24H51114.5°114.4°
C22C23O25H51131.6°131.6°
C23C22H50H49130.5°131.7°
C22C23C24H52130.0°90.7°
C22C23C24H53102.2°138.0°
C22C23O25H54180.0°180.0°
C24C23O25H51133.2°131.7°
C24C23C22H50102.1°137.9°
C24C23C22H49130.0°90.8°
C23C24H52H53130.4°131.7°
C24C23O25H5484.8°83.3°
O25C23C22H5010.5°107.8°
O25C23C22H49117.5°23.5°
O25C23C24H52118.8°23.7°
O25C23C24H539.0°107.6°
H44C13C18H450.7°0.0°
H45C18C19H460.0°0.1°
H46C19C20H470.1°0.0°
H47C20C21H480.5°0.3°
H50C22C23H51143.3°23.5°
H49C22C23H5115.4°154.8°
H51C23C24H5215.5°155.0°
H51C23C24H53143.3°23.7°
H51C23O25H5448.4°48.3°
H27C1C6H3361.5°60.0°
H27C1C6H3258.6°60.0°
H27C1C7H3458.5°60.1°
H27C1C7H3561.5°60.0°
H28C3C4H2959.0°60.0°
H28C3C4H3061.0°60.0°
H28C3C10H3961.4°60.0°
H28C3C10H3858.6°60.0°
H29C4C5H3162.4°60.0°
H30C4C5H3157.6°60.0°
H31C5C6H3358.1°60.0°
H31C5C6H3262.0°60.0°
H31C5C8H3663.4°60.0°
H34C7C9H3762.1°60.1°
H35C7C9H3758.0°60.0°
H36C8C9H3763.5°60.0°
H36C8O26H5561.1°60.0°
H37C9C10H3958.0°60.0°
H37C9C10H3861.9°60.0°

249697

PDB entries from 2026-02-25

PDB statisticsPDBj update infoContact PDBjnumon